BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0104.p (352 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777498.1| branched-chain amino acid ABC transporter pe... 455 e-126 ref|ZP_03264653.1| inner-membrane translocator [Burkholderia sp.... 444 e-123 ref|YP_003908697.1| inner-membrane translocator [Burkholderia sp... 443 e-122 ref|YP_002007090.1| branched-chain amino acid ABC transporter pe... 442 e-122 ref|YP_004230008.1| inner-membrane translocator [Burkholderia sp... 441 e-122 >ref|YP_003777498.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65590.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 350 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 264/350 (75%), Positives = 301/350 (86%) Query: 3 VDASIFAVLVQDGITTGAIYALLSLALVLVFSVTRVILLPQGEFVAFGALTLAAIQAGHA 62 +D SI VL+QDGITTGAIYALLSLALVLVFSVTRVI LPQGEFVAFGALTLAAIQ G A Sbjct: 1 MDTSILTVLIQDGITTGAIYALLSLALVLVFSVTRVIFLPQGEFVAFGALTLAAIQNGQA 60 Query: 63 PQSALLMVVLGVATILCELAGSLRRADRRGKLLGQLPLLAGKYLLFPIAIYAVTLYVPLK 122 P +ALL++ LG T+ E +LR A R +LL +LPLL +L P+AI A+T + L+ Sbjct: 61 PATALLLLALGAVTLAVETGSALRLAQTRARLLRRLPLLLATHLGLPLAILALTRCLDLQ 120 Query: 123 DLPMLLQIALALAIVVPMGPMVYRLAYQPLAHASILVLLIVSLGVHLAMVGLGLLMFGPE 182 L M QI LAL IVVPMGPM+YR+AYQPLAH+S+LVLLIVSLGVHLAMVGLGLLMFGPE Sbjct: 121 ALAMPWQILLALLIVVPMGPMIYRVAYQPLAHSSVLVLLIVSLGVHLAMVGLGLLMFGPE 180 Query: 183 GSNTLPFTDAQFAIGEMTVSGQSLIVIGTVVALIVGIYFYFERTLSGKALRATAVNRLGA 242 G+NT PFT+ QF +GE VSGQS+IV+ TV ALI IY +FERTL+GKALRATAVNRLGA Sbjct: 181 GTNTRPFTEMQFNLGESPVSGQSVIVLITVAALIAVIYVFFERTLTGKALRATAVNRLGA 240 Query: 243 RLVGIGTNQAGKLSFTLSAGIGALCGILIAPFTIINYESGFLIALKGFVGAIFGGLASYP 302 RLVG+G NQAGKLSF ++AGIGALCGILIAPFTI+NYESGF+IALKGFVGAIFGGLASYP Sbjct: 241 RLVGVGINQAGKLSFGMAAGIGALCGILIAPFTIVNYESGFIIALKGFVGAIFGGLASYP 300 Query: 303 IAAAGAVGVGLIESFSSFWASSFKDLIVFTVIIPVLLWRSLTSNHVDEEA 352 IAA G+V VGLIESFSSFWAS++K+LIVFTVIIP+LLWRSLTS+H+DEEA Sbjct: 301 IAALGSVSVGLIESFSSFWASAYKELIVFTVIIPILLWRSLTSHHIDEEA 350 >ref|ZP_03264653.1| inner-membrane translocator [Burkholderia sp. H160] gb|EEA03810.1| inner-membrane translocator [Burkholderia sp. H160] Length = 351 Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust. Identities = 232/349 (66%), Positives = 287/349 (82%) Query: 3 VDASIFAVLVQDGITTGAIYALLSLALVLVFSVTRVILLPQGEFVAFGALTLAAIQAGHA 62 +D SI A+L QDGITTGAIYALL+LALVLVFSVTRVI +PQGEFV++GALTLAA+Q Sbjct: 1 MDLSIAAILAQDGITTGAIYALLALALVLVFSVTRVIFIPQGEFVSYGALTLAALQTQKF 60 Query: 63 PQSALLMVVLGVATILCELAGSLRRADRRGKLLGQLPLLAGKYLLFPIAIYAVTLYVPLK 122 P + L++ +G A + E A LR A+RR LP++AGKYLLFPIA+YA+T + L+ Sbjct: 61 PATCWLLMAMGAACFVVETAAVLRHAERRRHAARTLPVVAGKYLLFPIAVYALTRGIFLQ 120 Query: 123 DLPMLLQIALALAIVVPMGPMVYRLAYQPLAHASILVLLIVSLGVHLAMVGLGLLMFGPE 182 LPM++QIAL L IV+PMGP VYRLAY+P+A A+ L+LLIV++ VH AMVGLGL+MFG E Sbjct: 121 PLPMIVQIALTLLIVIPMGPFVYRLAYEPIAEATTLLLLIVAVAVHFAMVGLGLVMFGAE 180 Query: 183 GSNTLPFTDAQFAIGEMTVSGQSLIVIGTVVALIVGIYFYFERTLSGKALRATAVNRLGA 242 GS T F+D F IG +++SGQSL VIGT V LI +Y YF+R++SGKALRAT+VNRLGA Sbjct: 181 GSRTNAFSDTTFNIGTLSISGQSLWVIGTAVVLIGALYLYFDRSISGKALRATSVNRLGA 240 Query: 243 RLVGIGTNQAGKLSFTLSAGIGALCGILIAPFTIINYESGFLIALKGFVGAIFGGLASYP 302 RLVGIGT QAG+L+FTL+AG+GALCGIL+AP T I Y+SGFLI LKGFVGAI GGL SYP Sbjct: 241 RLVGIGTTQAGRLAFTLAAGLGALCGILVAPLTTIYYDSGFLIGLKGFVGAIIGGLVSYP 300 Query: 303 IAAAGAVGVGLIESFSSFWASSFKDLIVFTVIIPVLLWRSLTSNHVDEE 351 +AAAG++ VGL+ES+SSFWAS++K++IVFT+IIPVLLWRSL S H +EE Sbjct: 301 LAAAGSILVGLLESYSSFWASAYKEVIVFTLIIPVLLWRSLASPHAEEE 349 >ref|YP_003908697.1| inner-membrane translocator [Burkholderia sp. CCGE1003] gb|ADN59406.1| inner-membrane translocator [Burkholderia sp. CCGE1003] Length = 351 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 232/349 (66%), Positives = 287/349 (82%) Query: 3 VDASIFAVLVQDGITTGAIYALLSLALVLVFSVTRVILLPQGEFVAFGALTLAAIQAGHA 62 +D SI A+L QDGITTGAIYALL+LALVLVFSVTRVI +PQGEFV++GALTLAA+Q Sbjct: 1 MDLSIAAILAQDGITTGAIYALLALALVLVFSVTRVIFIPQGEFVSYGALTLAALQTQKF 60 Query: 63 PQSALLMVVLGVATILCELAGSLRRADRRGKLLGQLPLLAGKYLLFPIAIYAVTLYVPLK 122 P + L++ +G A + E+AG R A+RR L +LAGKYLLFP+A+YA+T V L+ Sbjct: 61 PATCWLLMAMGAACFVVEIAGLARHAERRRHAARTLAVLAGKYLLFPVAVYALTQGVFLQ 120 Query: 123 DLPMLLQIALALAIVVPMGPMVYRLAYQPLAHASILVLLIVSLGVHLAMVGLGLLMFGPE 182 LPM+ QIAL L IV+PMGP VYRLAY+P+A A+ L+LLIV++ VH AMVGLGL+MFG E Sbjct: 121 PLPMIAQIALTLLIVIPMGPFVYRLAYEPIAEATTLLLLIVAVAVHFAMVGLGLVMFGAE 180 Query: 183 GSNTLPFTDAQFAIGEMTVSGQSLIVIGTVVALIVGIYFYFERTLSGKALRATAVNRLGA 242 GS T F+DA F +G +++SGQSL V+GT V LI +Y YF+R++SGKALRAT+VNRLGA Sbjct: 181 GSRTTAFSDATFNLGSLSISGQSLWVVGTAVVLIGALYLYFDRSISGKALRATSVNRLGA 240 Query: 243 RLVGIGTNQAGKLSFTLSAGIGALCGILIAPFTIINYESGFLIALKGFVGAIFGGLASYP 302 RLVGIGT QAG+L+FTL+AG+GALCGIL+AP T I Y+SGFLI LKGFVGAI GGL SYP Sbjct: 241 RLVGIGTTQAGRLAFTLAAGLGALCGILVAPLTTIYYDSGFLIGLKGFVGAIIGGLVSYP 300 Query: 303 IAAAGAVGVGLIESFSSFWASSFKDLIVFTVIIPVLLWRSLTSNHVDEE 351 +AAAG+V VGL+ES+SSFWAS++K++IVFT+IIPVLLWRSL S H +EE Sbjct: 301 LAAAGSVLVGLLESYSSFWASAYKEVIVFTLIIPVLLWRSLASPHAEEE 349 >ref|YP_002007090.1| branched-chain amino acid ABC transporter permease [Cupriavidus taiwanensis LMG 19424] emb|CAQ71029.1| putative branched-chain amino acid transport system permease, membrane component [Cupriavidus taiwanensis LMG 19424] Length = 350 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 240/349 (68%), Positives = 290/349 (83%) Query: 3 VDASIFAVLVQDGITTGAIYALLSLALVLVFSVTRVILLPQGEFVAFGALTLAAIQAGHA 62 +D SI A+L QDGIT+GAIYALL+LALVLVFSVTRVI +PQGEFVA+GALTLAA+QAGHA Sbjct: 1 MDLSIAAILAQDGITSGAIYALLALALVLVFSVTRVIFIPQGEFVAYGALTLAAMQAGHA 60 Query: 63 PQSALLMVVLGVATILCELAGSLRRADRRGKLLGQLPLLAGKYLLFPIAIYAVTLYVPLK 122 PQ++ L+V +GV T L E LR A+ R L +L +LAGKYL+FP+A++ V + Sbjct: 61 PQTSWLLVAMGVLTFLYETVTVLRSAELRRTLGQRLAVLAGKYLVFPLAVHWVVQQYGAQ 120 Query: 123 DLPMLLQIALALAIVVPMGPMVYRLAYQPLAHASILVLLIVSLGVHLAMVGLGLLMFGPE 182 LPML Q+AL L +++P+GPM+YRLAYQPLA AS LVLLIVS+GVH A+VGLGL+MFG E Sbjct: 121 PLPMLAQVALTLLVIIPLGPMLYRLAYQPLAEASTLVLLIVSVGVHFALVGLGLVMFGAE 180 Query: 183 GSNTLPFTDAQFAIGEMTVSGQSLIVIGTVVALIVGIYFYFERTLSGKALRATAVNRLGA 242 GS T PF+DA+F +G +++SGQSL V+ LI +YFYFERTL GKALRATAVNRLGA Sbjct: 181 GSRTNPFSDARFEVGALSISGQSLWVVAVSALLIGALYFYFERTLQGKALRATAVNRLGA 240 Query: 243 RLVGIGTNQAGKLSFTLSAGIGALCGILIAPFTIINYESGFLIALKGFVGAIFGGLASYP 302 RLVGIGT QAG+LSFTL+A +GALCGILIAP T + YESGFL+ LKGFVGAI GGL SYP Sbjct: 241 RLVGIGTTQAGRLSFTLAAAMGALCGILIAPLTTVYYESGFLVGLKGFVGAIVGGLVSYP 300 Query: 303 IAAAGAVGVGLIESFSSFWASSFKDLIVFTVIIPVLLWRSLTSNHVDEE 351 +AA GA+ VGL+ES+SSFWAS+FK++IVFT+IIPVLLWRSLTS HV+EE Sbjct: 301 VAALGALLVGLLESYSSFWASAFKEVIVFTLIIPVLLWRSLTSKHVEEE 349 >ref|YP_004230008.1| inner-membrane translocator [Burkholderia sp. CCGE1001] gb|ADX56948.1| inner-membrane translocator [Burkholderia sp. CCGE1001] Length = 351 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/349 (65%), Positives = 287/349 (82%) Query: 3 VDASIFAVLVQDGITTGAIYALLSLALVLVFSVTRVILLPQGEFVAFGALTLAAIQAGHA 62 +D SI A+L QDGITTGAIYALL+LALVLVFSVTRVI +PQGEFV++GALTLAA+Q Sbjct: 1 MDLSIAAILAQDGITTGAIYALLALALVLVFSVTRVIFIPQGEFVSYGALTLAALQTQKF 60 Query: 63 PQSALLMVVLGVATILCELAGSLRRADRRGKLLGQLPLLAGKYLLFPIAIYAVTLYVPLK 122 P + L++ +G A + E+AG R A+RR L +L GKYLLFP+A+YA+T V L+ Sbjct: 61 PATCWLLMAMGAACFVIEVAGLARHAERRRHAARTLAVLTGKYLLFPVAVYALTKGVFLQ 120 Query: 123 DLPMLLQIALALAIVVPMGPMVYRLAYQPLAHASILVLLIVSLGVHLAMVGLGLLMFGPE 182 LPM+ QIAL L IV+PMGP VYRLAY+P+A A+ L+LLIV++ VH AMVGLGL+MFG E Sbjct: 121 PLPMIAQIALTLLIVIPMGPFVYRLAYEPIAEATTLLLLIVAVAVHFAMVGLGLVMFGAE 180 Query: 183 GSNTLPFTDAQFAIGEMTVSGQSLIVIGTVVALIVGIYFYFERTLSGKALRATAVNRLGA 242 GS T F+DA F++G +++SGQSL V+GT V LI +Y YF+R++SGKALRAT+VNRLGA Sbjct: 181 GSRTTAFSDATFSLGSLSISGQSLWVVGTAVVLIGALYLYFDRSISGKALRATSVNRLGA 240 Query: 243 RLVGIGTNQAGKLSFTLSAGIGALCGILIAPFTIINYESGFLIALKGFVGAIFGGLASYP 302 RLVGIGT QAG+L+FTL+AG+GALCGIL+AP T I Y+SGFLI LKGFVGAI GGL SYP Sbjct: 241 RLVGIGTTQAGRLAFTLAAGLGALCGILVAPLTTIYYDSGFLIGLKGFVGAIIGGLVSYP 300 Query: 303 IAAAGAVGVGLIESFSSFWASSFKDLIVFTVIIPVLLWRSLTSNHVDEE 351 +AAAG++ VGL+ES+SSFWAS++K++IVFT+IIPVLLWRSL S H +EE Sbjct: 301 LAAAGSILVGLLESYSSFWASAYKEVIVFTLIIPVLLWRSLASPHAEEE 349