BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0101.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753309.1| methyl-accepting chemotaxis protein [Collimo... 167 1e-39 ref|YP_003278243.1| methyl-accepting chemotaxis sensory transduc... 159 3e-37 ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthin... 159 3e-37 ref|YP_315378.1| methyl-accepting chemotaxis sensory transducer ... 159 3e-37 ref|ZP_07045573.1| methyl-accepting chemotaxis sensory transduce... 159 4e-37 >ref|YP_004753309.1| methyl-accepting chemotaxis protein [Collimonas fungivorans Ter331] gb|AEK62486.1| methyl-accepting chemotaxis protein [Collimonas fungivorans Ter331] Length = 572 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 112/252 (44%), Positives = 145/252 (57%), Gaps = 63/252 (25%) Query: 1 LQAAVSIARRVATGDLSSKVVVEGRDEVSDLLGALQAMNQSLLKIVGEVRSGTRVISDAS 60 L A+ +A+ VA+GDLSS++ V+ DE L+ AL+ MN SL K+V EVRSGT I+ AS Sbjct: 218 LGEAIKVAQTVASGDLSSRIEVKTTDETGQLMQALKDMNDSLRKVVSEVRSGTDTIATAS 277 Query: 61 GQIASGNSELSARTEAQASSLEQTASSMEQLTATVTQNADHAVRANQIVEAASGFAVK-G 119 QIASGN +LS+RTE QASSLE+TA+SMEQLT+TV QNAD+A +ANQ+ +ASG A+K G Sbjct: 278 NQIASGNLDLSSRTEQQASSLEETAASMEQLTSTVKQNADNARQANQLAVSASGVALKGG 337 Query: 120 G---QVV----------SQVLDTMG----------------------------------- 131 G QVV +++D +G Sbjct: 338 GVVSQVVETMDLINTSAKKIVDIIGVIDNIAFQTNILALNAAVEAARAGEQGRGFAVVAS 397 Query: 132 --------------SIXTLIDDSVQKVQSGNALAGQAGGTMKEIVDSVQHVERIISEITQ 177 I LIDDSV+KV G L GQAG TM EIVDSV+ V I+SEIT Sbjct: 398 EVRNLAQRSAVAAKEIKHLIDDSVEKVDVGVKLVGQAGATMGEIVDSVKRVTDIMSEITA 457 Query: 178 AGREQSSGIGEI 189 A +EQ++GI ++ Sbjct: 458 ASQEQTAGIEQV 469 >ref|YP_003278243.1| methyl-accepting chemotaxis sensory transducer [Comamonas testosteroni CNB-2] gb|ACY32947.1| methyl-accepting chemotaxis sensory transducer [Comamonas testosteroni CNB-2] Length = 529 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 110/254 (43%), Positives = 144/254 (56%), Gaps = 63/254 (24%) Query: 1 LQAAVSIARRVATGDLSSKVVVEGRDEVSDLLGALQAMNQSLLKIVGEVRSGTRVISDAS 60 L+ AVS+ARRVA GDL++++ V DE L+ AL MN SL ++VG+VR GT I+ AS Sbjct: 231 LKHAVSVARRVADGDLTARIHVSSSDETGQLMQALHDMNTSLDRLVGQVRQGTDSIATAS 290 Query: 61 GQIASGNSELSARTEAQASSLEQTASSMEQLTATVTQNADHAVRANQIVEAASGFAVKGG 120 GQIA+GN +LSARTE QASSL+QTA+SMEQLT+TV QNAD+A +ANQ+ +AS AVKGG Sbjct: 291 GQIAAGNHDLSARTEEQASSLQQTAASMEQLTSTVKQNADNASQANQLALSASDVAVKGG 350 Query: 121 QVVSQVLDTMGSIXT----------LIDD------------SVQKVQSGN---------- 148 VVSQV++TMG+I +ID +V+ ++G Sbjct: 351 MVVSQVVETMGAISQSSRKISDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAS 410 Query: 149 ---ALAGQAGGTMKEI----------------------------VDSVQHVERIISEITQ 177 +LAG++ KEI V SVQ V I+ EIT Sbjct: 411 EVRSLAGRSAEAAKEIKQLIQASVTKVEEGSAQVSQAGQTMDEIVSSVQRVTDIMGEITA 470 Query: 178 AGREQSSGIGEIXR 191 A EQ+SGI +I R Sbjct: 471 ASHEQTSGIEQINR 484 >ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89943.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 106/252 (42%), Positives = 141/252 (55%), Gaps = 63/252 (25%) Query: 1 LQAAVSIARRVATGDLSSKVVVEGRDEVSDLLGALQAMNQSLLKIVGEVRSGTRVISDAS 60 L AV +AR+VA GDL+ +VV +DE LL ALQ MN L++IV +VR GT I+ AS Sbjct: 216 LSQAVGLARKVADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATAS 275 Query: 61 GQIASGNSELSARTEAQASSLEQTASSMEQLTATVTQNADHAVRANQIVEAASGFAVKGG 120 QIA+GN +LS+RTE QASSLE+TASSME+LT+TV QNAD+A ++NQ+ AS AV+GG Sbjct: 276 SQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGG 335 Query: 121 ----QVV----------SQVLDTMG----------------------------------- 131 QVV ++++D +G Sbjct: 336 AVVSQVVETMGSINDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 395 Query: 132 --------------SIXTLIDDSVQKVQSGNALAGQAGGTMKEIVDSVQHVERIISEITQ 177 I TLIDDSV+KV +G+ L AG TM E+V+SV+ V I+ EIT Sbjct: 396 EVRNLAQRSASAAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITA 455 Query: 178 AGREQSSGIGEI 189 A +EQ+ GI +I Sbjct: 456 ASQEQTDGIEQI 467 >ref|YP_315378.1| methyl-accepting chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] gb|AAZ97573.1| chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] Length = 559 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 85/133 (63%), Positives = 107/133 (80%) Query: 1 LQAAVSIARRVATGDLSSKVVVEGRDEVSDLLGALQAMNQSLLKIVGEVRSGTRVISDAS 60 + AV +A+ VA GDL+S++ VEG+DE LL AL+ MN SL+KIVG+VR GT I+ AS Sbjct: 213 MNQAVKVAQTVAAGDLTSRIEVEGKDETGRLLQALKDMNDSLVKIVGQVRLGTDAIATAS 272 Query: 61 GQIASGNSELSARTEAQASSLEQTASSMEQLTATVTQNADHAVRANQIVEAASGFAVKGG 120 +IA+GN +LS+RTE QASSLE+TASSMEQLT+TV QNADHA +ANQ+ +AS AVKGG Sbjct: 273 SEIATGNLDLSSRTEEQASSLEETASSMEQLTSTVKQNADHARQANQMAVSASEVAVKGG 332 Query: 121 QVVSQVLDTMGSI 133 VV+QV+DTMGSI Sbjct: 333 AVVAQVVDTMGSI 345 >ref|ZP_07045573.1| methyl-accepting chemotaxis sensory transducer [Comamonas testosteroni S44] gb|EFI60804.1| methyl-accepting chemotaxis sensory transducer [Comamonas testosteroni S44] Length = 514 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 110/254 (43%), Positives = 144/254 (56%), Gaps = 63/254 (24%) Query: 1 LQAAVSIARRVATGDLSSKVVVEGRDEVSDLLGALQAMNQSLLKIVGEVRSGTRVISDAS 60 L+ AVS+ARRVA GDL++++ V DE L+ AL MN SL ++VG+VR GT I+ AS Sbjct: 216 LKHAVSVARRVADGDLTARIHVSSSDETGQLMQALHDMNTSLDRLVGQVRQGTDSIATAS 275 Query: 61 GQIASGNSELSARTEAQASSLEQTASSMEQLTATVTQNADHAVRANQIVEAASGFAVKGG 120 GQIA+GN +LSARTE QASSL+QTA+SMEQLT+TV QNAD+A +ANQ+ +AS AVKGG Sbjct: 276 GQIAAGNHDLSARTEEQASSLQQTAASMEQLTSTVKQNADNASQANQLALSASDVAVKGG 335 Query: 121 QVVSQVLDTMGSIXT----------LIDD------------SVQKVQSGN---------- 148 VVSQV++TMG+I +ID +V+ ++G Sbjct: 336 MVVSQVVETMGAISQSSRKISDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAS 395 Query: 149 ---ALAGQAGGTMKEI----------------------------VDSVQHVERIISEITQ 177 +LAG++ KEI V SVQ V I+ EIT Sbjct: 396 EVRSLAGRSAEAAKEIKQLIQASVTKVEEGSAQVSQAGQTMDEIVSSVQRVTDIMGEITA 455 Query: 178 AGREQSSGIGEIXR 191 A EQ+SGI +I R Sbjct: 456 ASHEQTSGIEQINR 469