BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0086.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774966.1| transmembrane protein [Herbaspirillum serope... 351 3e-95 ref|YP_004753999.1| hypothetical protein CFU_3352 [Collimonas fu... 335 2e-90 ref|YP_001352571.1| hypothetical protein mma_0881 [Janthinobacte... 320 8e-86 ref|YP_410717.1| hypothetical protein Nmul_A0016 [Nitrosospira m... 310 1e-82 ref|YP_004693412.1| hypothetical protein Nit79A3_0106 [Nitrosomo... 306 1e-81 >ref|YP_003774966.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63058.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 351 bits (901), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 173/194 (89%), Positives = 181/194 (93%) Query: 11 KKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELSDLIGAALGNAASLEHILDAV 70 +KIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVEL DLIGAA+GNA+SL+HILDAV Sbjct: 13 RKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMGNASSLDHILDAV 72 Query: 71 AIEGALRPDKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLESHPDQPEWL 130 AI GA+RP+KLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLE HPDQPEWL Sbjct: 73 AIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLEGHPDQPEWL 132 Query: 131 SHVNASVLKVKLATAIIGISSIHLLKTFINANLYDVKTLLAQTGIHITFLLSAMAIAYCD 190 SHVNASVLKVKLATAIIGISSIHLLKTFINANLYD KTL+AQTGIHI FL SAMAIAYCD Sbjct: 133 SHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIAFLFSAMAIAYCD 192 Query: 191 RLMSHPAIPSEPPE 204 RLM HP + P Sbjct: 193 RLMIHPGAHGDEPS 206 >ref|YP_004753999.1| hypothetical protein CFU_3352 [Collimonas fungivorans Ter331] gb|AEK63176.1| hypothetical protein CFU_3352 [Collimonas fungivorans Ter331] Length = 204 Score = 335 bits (860), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 164/194 (84%), Positives = 176/194 (90%) Query: 1 MKDTRSTPSGKKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELSDLIGAALGNA 60 M + + + K IG+LPNLIFMSRWLQLPLYLGLILAQCVYV+HFWVEL+DLIGA GNA Sbjct: 1 MSNMQPSAPKKAIGVLPNLIFMSRWLQLPLYLGLILAQCVYVFHFWVELTDLIGAVFGNA 60 Query: 61 ASLEHILDAVAIEGALRPDKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNL 120 ASL HILD V I+GA+RP KL E TIMLVVL LIDVVMISNLLIMVIVGGYETFVSRMNL Sbjct: 61 ASLNHILDVVTIDGAVRPTKLTEATIMLVVLGLIDVVMISNLLIMVIVGGYETFVSRMNL 120 Query: 121 ESHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDVKTLLAQTGIHITFL 180 ESHPDQPEWLSHVNASVLKVKLA AIIGISSIHLLKTFINAN YDVKTLLAQTGIHITFL Sbjct: 121 ESHPDQPEWLSHVNASVLKVKLAMAIIGISSIHLLKTFINANAYDVKTLLAQTGIHITFL 180 Query: 181 LSAMAIAYCDRLMS 194 LSA+AIA+CDR+M+ Sbjct: 181 LSALAIAWCDRIMT 194 >ref|YP_001352571.1| hypothetical protein mma_0881 [Janthinobacterium sp. Marseille] gb|ABR90171.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 220 Score = 320 bits (820), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 160/199 (80%), Positives = 171/199 (85%) Query: 3 DTRSTPSGKKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELSDLIGAALGNAAS 62 T + + I L IFM+RWLQLPLYLGLILAQCVYV+HFWVELSDLIGA LGN S Sbjct: 20 STNELSTKQPIPPLARFIFMTRWLQLPLYLGLILAQCVYVFHFWVELSDLIGAVLGNPDS 79 Query: 63 LEHILDAVAIEGALRPDKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLES 122 L+HILDAVAI GA++P KLNE TIMLVVL LIDVVMISNLLIMVI+GGYETFVSRMNLES Sbjct: 80 LQHILDAVAIPGAVKPSKLNETTIMLVVLGLIDVVMISNLLIMVIIGGYETFVSRMNLES 139 Query: 123 HPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDVKTLLAQTGIHITFLLS 182 HPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINA+ YD KTLLAQTGIHI FL S Sbjct: 140 HPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINASAYDTKTLLAQTGIHIVFLFS 199 Query: 183 AMAIAYCDRLMSHPAIPSE 201 AMAIAY DR+M+ A SE Sbjct: 200 AMAIAYSDRIMAQTAAISE 218 >ref|YP_410717.1| hypothetical protein Nmul_A0016 [Nitrosospira multiformis ATCC 25196] gb|ABB73325.1| Uncharacterized protein UPF0114 [Nitrosospira multiformis ATCC 25196] Length = 215 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 158/202 (78%), Positives = 169/202 (83%), Gaps = 6/202 (2%) Query: 2 KDTRSTP----SGK--KIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELSDLIGA 55 DT TP SG+ KI L IF +RWLQLPLYLGLILAQCVYVYHFWVEL DLIGA Sbjct: 8 NDTNDTPLPVYSGRSRKIQPLAYFIFTTRWLQLPLYLGLILAQCVYVYHFWVELLDLIGA 67 Query: 56 ALGNAASLEHILDAVAIEGALRPDKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFV 115 +GN +LEH LDAV+IEGA P K+ E TIMLVVL LIDVVMISNLLIMVI+GGYETFV Sbjct: 68 VMGNKEALEHTLDAVSIEGAAPPKKIGETTIMLVVLGLIDVVMISNLLIMVIIGGYETFV 127 Query: 116 SRMNLESHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDVKTLLAQTGI 175 SRMNLE HPDQPEWLSHVNA+VLKVKL+TAIIGISSIHLLKTFINAN YD KT+LAQTGI Sbjct: 128 SRMNLEGHPDQPEWLSHVNATVLKVKLSTAIIGISSIHLLKTFINANAYDEKTILAQTGI 187 Query: 176 HITFLLSAMAIAYCDRLMSHPA 197 HI FLLSA+AIAY DRLMS P Sbjct: 188 HIVFLLSAIAIAYSDRLMSRPG 209 >ref|YP_004693412.1| hypothetical protein Nit79A3_0106 [Nitrosomonas sp. Is79A3] gb|AEJ00013.1| UPF0114 protein yqhA [Nitrosomonas sp. Is79A3] Length = 208 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 149/199 (74%), Positives = 170/199 (85%) Query: 2 KDTRSTPSGKKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELSDLIGAALGNAA 61 KD+ ++I + + +F++RWLQLPLYLGL+LAQCVYV+HFWVELSDLIGA LGN Sbjct: 7 KDSSGNIPLRRIHPIAHFLFLTRWLQLPLYLGLVLAQCVYVFHFWVELSDLIGAVLGNQN 66 Query: 62 SLEHILDAVAIEGALRPDKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLE 121 +L+HILD V I+GA RP KL E IMLVVL LIDVVMISNLLIMVI+GGYETFVSRMNLE Sbjct: 67 ALQHILDTVTIKGAERPTKLTETAIMLVVLGLIDVVMISNLLIMVIIGGYETFVSRMNLE 126 Query: 122 SHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDVKTLLAQTGIHITFLL 181 HPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINA+ YD KTLLAQTGIH+ FLL Sbjct: 127 GHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINASAYDEKTLLAQTGIHMAFLL 186 Query: 182 SAMAIAYCDRLMSHPAIPS 200 SA+AIAYCDR+++ + S Sbjct: 187 SAIAIAYCDRIITQTSQQS 205