BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0084.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774965.1| fumarate hydratase [Herbaspirillum seropedic... 601 e-170 ref|YP_004754000.1| fumarate hydratase class I, aerobic [Collimo... 589 e-166 ref|ZP_08274776.1| Fumarate hydratase class I, aerobic [Oxalobac... 563 e-159 ref|YP_001352570.1| fumarate hydratase, class I [Janthinobacteri... 563 e-158 ref|YP_001099230.1| fumarase A [Herminiimonas arsenicoxydans] >g... 559 e-157 >ref|YP_003774965.1| fumarate hydratase [Herbaspirillum seropedicae SmR1] emb|CAM32536.1| Fumarate hydratase protein [Herbaspirillum seropedicae] gb|ADJ63057.1| fumarate hydratase protein [Herbaspirillum seropedicae SmR1] Length = 513 Score = 601 bits (1550), Expect = e-170, Method: Compositional matrix adjust. Identities = 292/312 (93%), Positives = 303/312 (97%) Query: 1 MLMAKEVLMDDIDMYELKQRGPQNKTEELRIELCDKVNALGIGAQGLGGLTTVLDVKIAM 60 MLMAKEVLM+DIDMYEL +RGPQNKTEELRIEL +KVNALGIGAQGLGGLTTVLDVKI M Sbjct: 202 MLMAKEVLMEDIDMYELLKRGPQNKTEELRIELYEKVNALGIGAQGLGGLTTVLDVKIMM 261 Query: 61 YPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMDPPSLSEWPEVHWVPDTEKSKSVNLD 120 +PTHAASKPVAMIPNCAATRHGHFVLDGSGPAYM+PPSLS+WPEVHWV DTEKSK VNLD Sbjct: 262 HPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSLSDWPEVHWVADTEKSKRVNLD 321 Query: 121 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQEMLAKGEKLPVDFTNRVIYYVGPVDP 180 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQ+MLAKGEKLPVDFTNRVIYYVGPVDP Sbjct: 322 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAKGEKLPVDFTNRVIYYVGPVDP 381 Query: 181 VRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGPTAIEAIKKHKSAYLMAVGG 240 VRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGP AIEAIKKHKSAYLMAVGG Sbjct: 382 VRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGPAAIEAIKKHKSAYLMAVGG 441 Query: 241 SAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVDSNGISVHNTGPAEWKEKIAT 300 SAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVD+NG+SVHNTGPAEWKEKIA Sbjct: 442 SAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVDANGVSVHNTGPAEWKEKIAQ 501 Query: 301 NTALSKIAVTTA 312 + +LSKI VTTA Sbjct: 502 SVSLSKIPVTTA 513 >ref|YP_004754000.1| fumarate hydratase class I, aerobic [Collimonas fungivorans Ter331] gb|AEK63177.1| Fumarate hydratase class I, aerobic [Collimonas fungivorans Ter331] Length = 518 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 286/310 (92%), Positives = 300/310 (96%), Gaps = 1/310 (0%) Query: 1 MLMAKEVLMDDIDMYELKQRGPQNKTEELRIELCDKVNALGIGAQGLGGLTTVLDVKIAM 60 MLMAK+VLM+DIDMY+L +RGPQNKTEELRIEL KVNALGIGAQGLGGLTTVLDVKI M Sbjct: 208 MLMAKQVLMEDIDMYDLLKRGPQNKTEELRIELFQKVNALGIGAQGLGGLTTVLDVKIMM 267 Query: 61 YPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMDPPSLSEWPEVHWVPDTEKSKSVNLD 120 +PTHAASKPVAMIPNCAATRHGHFVLDGSGPAYM+PPSLSEWPEVHWVPDTEKSK V+L+ Sbjct: 268 HPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSLSEWPEVHWVPDTEKSKRVDLN 327 Query: 121 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQEMLAKGEKLPVDFTNRVIYYVGPVDP 180 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQEMLAKGEKLPVDFTNRVIYYVGPVDP Sbjct: 328 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQEMLAKGEKLPVDFTNRVIYYVGPVDP 387 Query: 181 VRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGPTAIEAIKKHKSAYLMAVGG 240 VRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGP AIE+IK+HKSAYLMAVGG Sbjct: 388 VRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGPVAIESIKQHKSAYLMAVGG 447 Query: 241 SAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVDSNGISVHNTGPAEWKEKIAT 300 +AYLVSKAIKSA+VLGFADLGMEAIYEFDVKDMPVTVAVDSNGISVHNTGP EW+EKIA Sbjct: 448 AAYLVSKAIKSAQVLGFADLGMEAIYEFDVKDMPVTVAVDSNGISVHNTGPKEWQEKIA- 506 Query: 301 NTALSKIAVT 310 + ALSKI VT Sbjct: 507 HAALSKIPVT 516 >ref|ZP_08274776.1| Fumarate hydratase class I, aerobic [Oxalobacteraceae bacterium IMCC9480] gb|EGF31764.1| Fumarate hydratase class I, aerobic [Oxalobacteraceae bacterium IMCC9480] Length = 324 Score = 563 bits (1452), Expect = e-159, Method: Compositional matrix adjust. Identities = 270/312 (86%), Positives = 292/312 (93%), Gaps = 1/312 (0%) Query: 1 MLMAKEVLMDDIDMYELKQRGPQNKTEELRIELCDKVNALGIGAQGLGGLTTVLDVKIAM 60 MLMAK+ LM+DIDMYEL+QRGPQNKTEELRIELCDK+NALGIGAQGLGGLTTVLDVKI M Sbjct: 14 MLMAKQSLMEDIDMYELRQRGPQNKTEELRIELCDKINALGIGAQGLGGLTTVLDVKIMM 73 Query: 61 YPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMDPPSLSEWPEVHWVPDTEKSKSVNLD 120 PTHAASKPVAMIPNCAATRH HFVLDGSG Y++PP LS WP+V WV DTEKSK V+L+ Sbjct: 74 QPTHAASKPVAMIPNCAATRHAHFVLDGSGAVYLEPPLLSSWPDVKWVADTEKSKRVDLN 133 Query: 121 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQEMLAKGEKLPVDFTNRVIYYVGPVDP 180 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQ+MLAKGE LPVDFTNRVIYYVGPVDP Sbjct: 134 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAKGEALPVDFTNRVIYYVGPVDP 193 Query: 181 VRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGPTAIEAIKKHKSAYLMAVGG 240 VRDE VGPAGPTTATRMDKFTDMMLEQTGLISM+GK+ERGP AIE+I+KHKSAYLMAVGG Sbjct: 194 VRDEAVGPAGPTTATRMDKFTDMMLEQTGLISMVGKAERGPEAIESIRKHKSAYLMAVGG 253 Query: 241 SAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVDSNGISVHNTGPAEWKEKIAT 300 +AYLVSKAIKSA V+GFADLGMEAIYEFDV+DMPVTVAVDS+GISVHNTGP EW+EKIA Sbjct: 254 AAYLVSKAIKSATVVGFADLGMEAIYEFDVQDMPVTVAVDSSGISVHNTGPKEWQEKIA- 312 Query: 301 NTALSKIAVTTA 312 ++ALS+I V A Sbjct: 313 HSALSQIPVVAA 324 >ref|YP_001352570.1| fumarate hydratase, class I [Janthinobacterium sp. Marseille] gb|ABR89454.1| fumarate hydratase, class I [Janthinobacterium sp. Marseille] Length = 512 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/298 (88%), Positives = 287/298 (96%) Query: 1 MLMAKEVLMDDIDMYELKQRGPQNKTEELRIELCDKVNALGIGAQGLGGLTTVLDVKIAM 60 MLMAK+VLM+DIDMYELK+RGPQNKTEELRIELCDK+N+LGIGAQGLGGLTTVLDVKI M Sbjct: 202 MLMAKQVLMEDIDMYELKKRGPQNKTEELRIELCDKINSLGIGAQGLGGLTTVLDVKIMM 261 Query: 61 YPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMDPPSLSEWPEVHWVPDTEKSKSVNLD 120 +PTHAASKPVAMIPNCAATRH HFVLDGSGP Y+DPP+LS+WP+V+W+PDTE+SK V+L+ Sbjct: 262 HPTHAASKPVAMIPNCAATRHAHFVLDGSGPVYLDPPALSDWPKVNWMPDTEQSKRVDLN 321 Query: 121 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQEMLAKGEKLPVDFTNRVIYYVGPVDP 180 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQ+MLAKGEKLPVDFTNR+IYYVGPVDP Sbjct: 322 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAKGEKLPVDFTNRIIYYVGPVDP 381 Query: 181 VRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGPTAIEAIKKHKSAYLMAVGG 240 VRDEVVGPAGPTTATRMDKFT+MML QTGLISM+GK+ERGPTAIEAIKKHKSAYLMAVGG Sbjct: 382 VRDEVVGPAGPTTATRMDKFTEMMLAQTGLISMVGKAERGPTAIEAIKKHKSAYLMAVGG 441 Query: 241 SAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVDSNGISVHNTGPAEWKEKI 298 +AYLVSKAIK AKVLGF DLGMEAIYEFDV+DMPVTVAVDS G SVH TGP EWKEKI Sbjct: 442 AAYLVSKAIKKAKVLGFEDLGMEAIYEFDVQDMPVTVAVDSTGTSVHTTGPKEWKEKI 499 >ref|YP_001099230.1| fumarase A [Herminiimonas arsenicoxydans] emb|CAL61103.1| putative fumarate hydratase class I, aerobic (Fumarase) (FumA-like) [Herminiimonas arsenicoxydans] Length = 512 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 263/298 (88%), Positives = 286/298 (95%) Query: 1 MLMAKEVLMDDIDMYELKQRGPQNKTEELRIELCDKVNALGIGAQGLGGLTTVLDVKIAM 60 MLMAK+VLM+DIDMYELK+RGPQNKTEELRIELCDK+NALGIGAQGLGGLTTVLDVKI M Sbjct: 202 MLMAKQVLMEDIDMYELKKRGPQNKTEELRIELCDKINALGIGAQGLGGLTTVLDVKIMM 261 Query: 61 YPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMDPPSLSEWPEVHWVPDTEKSKSVNLD 120 +PTHAASKPVAMIPNCAATRH HFVLDGSGP Y+DPPSLS+WP+V+W P+TE SK V+L+ Sbjct: 262 HPTHAASKPVAMIPNCAATRHAHFVLDGSGPVYLDPPSLSDWPDVNWAPNTELSKRVDLN 321 Query: 121 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQEMLAKGEKLPVDFTNRVIYYVGPVDP 180 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQ+MLAKGEKLPVDFTNR+IYYVGPVDP Sbjct: 322 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAKGEKLPVDFTNRIIYYVGPVDP 381 Query: 181 VRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGPTAIEAIKKHKSAYLMAVGG 240 VRDEVVGPAGPTTATRMDKFT+MML QTGLISM+GK+ERGPTAIE+IKKH+SAYLMAVGG Sbjct: 382 VRDEVVGPAGPTTATRMDKFTEMMLAQTGLISMVGKAERGPTAIESIKKHQSAYLMAVGG 441 Query: 241 SAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVDSNGISVHNTGPAEWKEKI 298 +AYLVSKAIK+AKV+GFADLGMEAIYEFDV DMPVTVAVDS G SVHN GP EWK+KI Sbjct: 442 AAYLVSKAIKTAKVVGFADLGMEAIYEFDVTDMPVTVAVDSTGTSVHNIGPKEWKDKI 499