BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0082.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003050319.1| HxlR family transcriptional regulator [Methy...   181   3e-44
ref|YP_980861.1| HxlR family transcriptional regulator [Polaromo...   177   6e-43
ref|YP_004753929.1| HxlR family transcriptional regulator [Colli...   176   9e-43
ref|YP_001790473.1| HxlR family transcriptional regulator [Lepto...   174   4e-42
ref|YP_004304692.1| HxlR-like helix-turn-helix protein [Polymorp...   169   1e-40

>ref|YP_003050319.1| HxlR family transcriptional regulator [Methylovorus glucosetrophus
           SIP3-4]
 ref|YP_004038987.1| HxlR family transcriptional regulator [Methylovorus sp. MP688]
 gb|ACT49792.1| transcriptional regulator, HxlR family [Methylovorus glucosetrophus
           SIP3-4]
 gb|ADQ83751.1| transcriptional regulator, HxlR family [Methylovorus sp. MP688]
          Length = 131

 Score =  181 bits (459), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/113 (73%), Positives = 96/113 (84%)

Query: 1   MQRGELFAADCPSRSVLKHLTSRWGVLLLVALLGGTHRFSDLRRKVGGVSEKMLAQTLQE 60
           MQRG +FAA CPSR VLKH+TSRWGVL+LVALLGGTHRFSDLRRK+GGVSE+MLAQTLQ 
Sbjct: 16  MQRGNVFAAQCPSREVLKHVTSRWGVLVLVALLGGTHRFSDLRRKIGGVSERMLAQTLQW 75

Query: 61  LEGDGLVIRKSYDVVPPHVDYTLSPLGQEAAQRIETLTDWIEMSLPRFMAARQ 113
           LE DG V+R SY VVPPHV+Y+L+PLGQE   R+E L DWI+  LP  +AA+Q
Sbjct: 76  LEQDGFVLRTSYPVVPPHVEYSLTPLGQEVGLRVEALADWIQEKLPNILAAQQ 128


>ref|YP_980861.1| HxlR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gb|ABM35940.1| transcriptional regulator, HxlR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 140

 Score =  177 bits (448), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 83/113 (73%), Positives = 98/113 (86%)

Query: 1   MQRGELFAADCPSRSVLKHLTSRWGVLLLVALLGGTHRFSDLRRKVGGVSEKMLAQTLQE 60
           ++RG LF+ +CPSR VLKH+TSRWGVL+LVAL GGTHRFSDLRRKVGGVSEKMLAQTLQ 
Sbjct: 18  LRRGSLFSVECPSREVLKHVTSRWGVLVLVALGGGTHRFSDLRRKVGGVSEKMLAQTLQC 77

Query: 61  LEGDGLVIRKSYDVVPPHVDYTLSPLGQEAAQRIETLTDWIEMSLPRFMAARQ 113
           LE DG V RKSY VVPPHV+Y+L+PLG+E A+++E L DWIE +LPR M AR+
Sbjct: 78  LESDGFVDRKSYPVVPPHVEYSLTPLGEEVARQVEALADWIEGNLPRIMDARR 130


>ref|YP_004753929.1| HxlR family transcriptional regulator [Collimonas fungivorans
           Ter331]
 gb|AEK63106.1| transcriptional regulator, HxlR family [Collimonas fungivorans
           Ter331]
          Length = 136

 Score =  176 bits (447), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 94/113 (83%)

Query: 1   MQRGELFAADCPSRSVLKHLTSRWGVLLLVALLGGTHRFSDLRRKVGGVSEKMLAQTLQE 60
           MQRG+LF   CPSR VL H+TSRWGVL+LVALLGGT+RFSDLRRKV GVSE+MLAQTLQ 
Sbjct: 19  MQRGDLFTGKCPSREVLTHVTSRWGVLILVALLGGTYRFSDLRRKVNGVSERMLAQTLQW 78

Query: 61  LEGDGLVIRKSYDVVPPHVDYTLSPLGQEAAQRIETLTDWIEMSLPRFMAARQ 113
           LE DG V+RKSY VVPPHV+Y+L+PLG E   ++E L DWIE SLP+ M AR+
Sbjct: 79  LEADGFVLRKSYPVVPPHVEYSLTPLGLEVGNKVEALADWIEESLPQIMEARR 131


>ref|YP_001790473.1| HxlR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gb|ACB33708.1| transcriptional regulator, HxlR family [Leptothrix cholodnii SP-6]
          Length = 146

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 101/125 (80%)

Query: 1   MQRGELFAADCPSRSVLKHLTSRWGVLLLVALLGGTHRFSDLRRKVGGVSEKMLAQTLQE 60
           ++RGELF+ DCPSR VLKH+TSRWGVLLLVAL+GGTHRFSDLRRKVGGVSEKMLAQTL+ 
Sbjct: 18  VRRGELFSPDCPSRDVLKHVTSRWGVLLLVALMGGTHRFSDLRRKVGGVSEKMLAQTLRW 77

Query: 61  LEGDGLVIRKSYDVVPPHVDYTLSPLGQEAAQRIETLTDWIEMSLPRFMAARQEKEEEAT 120
           LE DG V+R S+D VPPHV+Y+L+PLG    QR+  L DWIE++LP  + A++ +   + 
Sbjct: 78  LEADGFVLRVSHDTVPPHVEYSLTPLGLAVGQRVAALADWIELNLPDILDAQRLQVGASA 137

Query: 121 KRAGK 125
             AG+
Sbjct: 138 AAAGR 142


>ref|YP_004304692.1| HxlR-like helix-turn-helix protein [Polymorphum gilvum SL003B-26A1]
 gb|ADZ71388.1| HxlR-like helix-turn-helix protein [Polymorphum gilvum SL003B-26A1]
          Length = 157

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 94/118 (79%)

Query: 1   MQRGELFAADCPSRSVLKHLTSRWGVLLLVALLGGTHRFSDLRRKVGGVSEKMLAQTLQE 60
           ++RGELF+ DCPSR +LKHLTSRWGVL+L+ALL G HRFS LRR+VGGVSEKMLAQTLQ 
Sbjct: 37  VRRGELFSVDCPSRDILKHLTSRWGVLVLIALLEGPHRFSALRRRVGGVSEKMLAQTLQV 96

Query: 61  LEGDGLVIRKSYDVVPPHVDYTLSPLGQEAAQRIETLTDWIEMSLPRFMAARQEKEEE 118
           LE DG V R SY VVPPHVDY L+PLGQEAA  +    DWIE+++ R +A R+ +  +
Sbjct: 97  LEADGFVDRTSYPVVPPHVDYALTPLGQEAAHSVRIFADWIELNVGRILAERERRRHK 154