BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0075.p         (162 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002545427.1| hypothetical protein Arad_3579 [Agrobacteriu...   127   5e-28
ref|YP_769381.1| transmembrane protein [Rhizobium leguminosarum ...   122   2e-26
ref|YP_003785085.1| putative transmembrane protein [Brachyspira ...   122   2e-26
ref|YP_002720980.1| hypothetical protein BHWA1_00783 [Brachyspir...   121   3e-26
ref|YP_003632830.1| hypothetical protein Bmur_0528 [Brachyspira ...   121   3e-26

>ref|YP_002545427.1| hypothetical protein Arad_3579 [Agrobacterium radiobacter K84]
 gb|ACM27497.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 188

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 94/152 (61%)

Query: 11  QQSYDDEIARAGQVTNMKGTILHSLAAHQAYHGSYLIKTELIKLLGKRAFNVYAHAISSA 70
           +  +D E+A  G++TNMK T+LHS  AH+ Y   + ++ EL   L  RA  ++  AIS  
Sbjct: 17  RAEHDREVALRGRMTNMKRTLLHSPVAHRIYAEWFSLREELRPALDDRAVWLFCQAISLE 76

Query: 71  SDCLLCSTFFRKALAAEGISPKDFNPTDDEQLLIDLGSRIGGRAKQLDDAIWTRLKQRYD 130
           S  ++   FFR+AL   G++P+   PT+DE LLID G  I   +  + + +W RLK RYD
Sbjct: 77  SRAIIPVGFFRRALINAGLTPETIIPTEDEALLIDFGKAIVKDSNAIPEELWERLKARYD 136

Query: 131 DSAIVNLIGFGGTMVATNIFNSLLEVDMDDYL 162
           +  +VNL+ F G M+AT ++ ++++VD+D  L
Sbjct: 137 EPTLVNLVAFAGMMIATAVYTNVVKVDIDPEL 168


>ref|YP_769381.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
 emb|CAK09292.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 180

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 94/152 (61%)

Query: 11  QQSYDDEIARAGQVTNMKGTILHSLAAHQAYHGSYLIKTELIKLLGKRAFNVYAHAISSA 70
           + ++D+E+   G++TNMK T+LHS AAH+ Y   + ++ EL   +  RA  +++HAIS A
Sbjct: 17  RAAHDEEVRLRGRMTNMKRTLLHSPAAHRIYAEWFTLRAELDPDVSDRAIWIFSHAISKA 76

Query: 71  SDCLLCSTFFRKALAAEGISPKDFNPTDDEQLLIDLGSRIGGRAKQLDDAIWTRLKQRYD 130
           +   +  TFFR+AL  +G +P     +D+E LL   G  I   +  +   +W +LKQRY+
Sbjct: 77  AKSKIAITFFRRALINKGFNPDALELSDEEALLDAFGKAIVADSNAVPAELWAKLKQRYE 136

Query: 131 DSAIVNLIGFGGTMVATNIFNSLLEVDMDDYL 162
              +V+L+ F G M+AT +FN+++EVD D  L
Sbjct: 137 TKVLVDLVAFAGIMLATAVFNNVVEVDFDPEL 168


>ref|YP_003785085.1| putative transmembrane protein [Brachyspira pilosicoli 95/1000]
 gb|ADK30584.1| putative transmembrane protein [Brachyspira pilosicoli 95/1000]
          Length = 185

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 100/152 (65%)

Query: 11  QQSYDDEIARAGQVTNMKGTILHSLAAHQAYHGSYLIKTELIKLLGKRAFNVYAHAISSA 70
           ++++D ++ ++G VTNMK  +L+  A ++A+ G Y+    L++++GKRA  + AH++S+ 
Sbjct: 17  KEAFDYQLKKSGNVTNMKKALLNDYATYEAFMGWYVSFERLVEVVGKRAAMILAHSVSTT 76

Query: 71  SDCLLCSTFFRKALAAEGISPKDFNPTDDEQLLIDLGSRIGGRAKQLDDAIWTRLKQRYD 130
           + C+LCS FF + L A G  PK+    + E+LL +LG ++      + D +   LK+ ++
Sbjct: 77  NGCMLCSLFFIRDLKAIGDDPKNLKLDEKEKLLSELGKQMVKDPNGVTDELMNNLKKYFN 136

Query: 131 DSAIVNLIGFGGTMVATNIFNSLLEVDMDDYL 162
           DS IV ++GF   M+ATN FN++L++D+D+ L
Sbjct: 137 DSEIVTIVGFAAQMMATNNFNAVLQIDLDESL 168


>ref|YP_002720980.1| hypothetical protein BHWA1_00783 [Brachyspira hyodysenteriae WA1]
 gb|ACN83276.1| hypothetical protein BHWA1_00783 [Brachyspira hyodysenteriae WA1]
          Length = 185

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 99/152 (65%)

Query: 11  QQSYDDEIARAGQVTNMKGTILHSLAAHQAYHGSYLIKTELIKLLGKRAFNVYAHAISSA 70
           ++++D ++ ++G VTNMK  +L+  A ++A+ G Y+    L++++GKRA  + AH++S+ 
Sbjct: 17  KEAFDYQLKKSGSVTNMKKALLNDYATYEAFMGWYVSFDRLVEVVGKRAAMILAHSVSTT 76

Query: 71  SDCLLCSTFFRKALAAEGISPKDFNPTDDEQLLIDLGSRIGGRAKQLDDAIWTRLKQRYD 130
           + C+LCS FF + L A G  PK+    + EQLL  LG ++      + D +   LK+ ++
Sbjct: 77  NGCMLCSLFFIRDLKAIGDDPKNLKLDEKEQLLSQLGMQMVKDPNGVTDELMNNLKKHFN 136

Query: 131 DSAIVNLIGFGGTMVATNIFNSLLEVDMDDYL 162
           DS IV ++GF   M+ATN FN++L++D+D+ L
Sbjct: 137 DSEIVTIVGFAAQMMATNNFNAVLKIDLDESL 168


>ref|YP_003632830.1| hypothetical protein Bmur_0528 [Brachyspira murdochii DSM 12563]
 gb|ADG70631.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
          Length = 185

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 98/152 (64%)

Query: 11  QQSYDDEIARAGQVTNMKGTILHSLAAHQAYHGSYLIKTELIKLLGKRAFNVYAHAISSA 70
           ++++D ++ ++G VTNMK  +L+  A ++A+ G Y     L++++GKRA  + AH++S+ 
Sbjct: 17  KEAFDYQLKKSGNVTNMKKALLNDYATYEAFMGWYTSFDRLVEVVGKRAAMILAHSVSTT 76

Query: 71  SDCLLCSTFFRKALAAEGISPKDFNPTDDEQLLIDLGSRIGGRAKQLDDAIWTRLKQRYD 130
           + C+LCS FF + L A G  PK+    + EQLL  LG ++      + D +   LK+ ++
Sbjct: 77  NGCMLCSLFFIRDLKAIGEDPKNLKLDEKEQLLSQLGMQMVKDPNAVSDELINNLKKHFN 136

Query: 131 DSAIVNLIGFGGTMVATNIFNSLLEVDMDDYL 162
           DS IV ++GF   M+ATN FN++L++D+D+ L
Sbjct: 137 DSEIVTIVGFAAQMMATNNFNAVLKIDLDESL 168