BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0067.p (396 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002945746.1| cytochrome C class I [Variovorax paradoxus S... 338 9e-91 ref|YP_004682002.1| sulfonate ABC transporter ATP-binding protei... 310 3e-82 ref|YP_001892976.1| cytochrome c class I [Ralstonia pickettii 12... 308 1e-81 ref|YP_002008217.1| hypothetical protein RALTA_B1568 [Cupriavidu... 307 3e-81 ref|YP_841381.1| cytochrome c, mono-and diheme variants [Ralston... 306 4e-81 >ref|YP_002945746.1| cytochrome C class I [Variovorax paradoxus S110] gb|ACS20480.1| cytochrome c class I [Variovorax paradoxus S110] Length = 388 Score = 338 bits (867), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 202/403 (50%), Positives = 257/403 (63%), Gaps = 25/403 (6%) Query: 1 VNLLSLSDWINLLLGAIQVLQDGFLHALAALGLAQTSHGQPAWPFAERLSGDVLLIDRSI 60 +N +DW+NLL+G +Q Q L L ALGLAQ HGQPAWP+A RLSG+ LLID Sbjct: 1 MNSTPEADWLNLLIGLLQGAQLQLLRVLDALGLAQHVHGQPAWPWARRLSGENLLIDLGQ 60 Query: 61 ARQLLSALGFSLAALLALVIALAWRRGRVVMLLATVALVFFTPWPDRHLLLAPAEPTSFH 120 AR L L F A LAL+++L WRR R +L L+ PWP+ H++L PA P SFH Sbjct: 61 ARSLAWTLVFVAVAALALLLSLFWRRPRYYLLALVPMLLIAAPWPESHVVLVPATPASFH 120 Query: 121 TSPTGFSAAAIVHGRQVYEQRCASCHAIDGKGDTPLALSLPVSPPNLASGLLWRRADGEL 180 SPTGF+AA+I GR +Y+Q C +CH DGKG+ PLA SL V PP+L+ LLWRRADG+L Sbjct: 121 ASPTGFTAASIAQGRVLYQQNCVACHGADGKGEGPLAASLAVWPPDLSGPLLWRRADGDL 180 Query: 181 FWKIAYGARD--RHGAATMPGFTRQLTDNDVWALIDFMKANAAGASIRAIGAWDQPVALP 238 W+I +G RD + G TMPGF +L + D WAL+D+MKA AG S+RA+G W QP+ LP Sbjct: 181 LWRILHGTRDAQQRGQPTMPGFAGKLGEADAWALVDYMKAQGAGQSLRALGNWPQPIGLP 240 Query: 239 AEAADCGKQATQT----GGQRVRVILASAQQSAALPFDDPRLRSVVLADGALKLPAPQAG 294 A CG Q + GQRVR++ A + +DPRL +V+L P Sbjct: 241 DMAVRCGSQPPRLLASWRGQRVRIVAGDAVLT-----EDPRLVTVLLR------PPSSTV 289 Query: 295 APAIDCLSRSKDAWQALSIITGIDSDQLAGTQLLTDRDGWLRARKLPADSNGAWSESDIL 354 A + DC++ S AW+ALS+I G +DQLAGTQL+ DRDGWLRAR P + WS+ D+L Sbjct: 290 ATSADCVADSAAAWEALSLIAG--TDQLAGTQLIADRDGWLRARGAPGKAG--WSDDDLL 345 Query: 355 C---RAPAEMAAGKSNKPG-GLDSLIAAMDAEPVRFVKGGFVH 393 C RAP G + P GL +LIA MDA+PVRFVKGGF+H Sbjct: 346 CRSERAPVAWGQGAAALPADGLGALIARMDAQPVRFVKGGFIH 388 >ref|YP_004682002.1| sulfonate ABC transporter ATP-binding protein SsuB [Cupriavidus necator N-1] gb|AEI80770.1| cytochrome c [Cupriavidus necator N-1] Length = 393 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 189/393 (48%), Positives = 237/393 (60%), Gaps = 16/393 (4%) Query: 9 WINLLLGAIQVLQDGFLHALAALGLAQTSHGQPAWPFAERLSGDVLLIDRSIARQLLSAL 68 W+N LL I+ LQ G L ALGL SHGQPAWP+A R++G+ LLID +ARQ+ +L Sbjct: 9 WLNGLLVLIEKLQLGLLSLWHALGLTGDSHGQPAWPWARRVAGETLLIDLGLARQVGLSL 68 Query: 69 GFSLAALLALVIALAWRRGRVVMLLATVALVFFTPWPDRHLLLAPAEPTSFHTSPTGFSA 128 + A+LA+ ALAWRR R V+L A + PWP LLL PA PTSFH SPT FS Sbjct: 69 CALVFAVLAITAALAWRRQRGVLLAAGALALVAAPWPSAALLLVPAAPTSFHASPTRFSV 128 Query: 129 AAIVHGRQVYEQRCASCHAIDGKGDTPLALSLPVSPPNLASGLLWRRADGELFWKIAYGA 188 AI G +VY Q CA+CH DG+G+ PLA SL PP L S LL RRADGELFW + G Sbjct: 129 DAIALGARVYAQHCANCHGADGRGEGPLAASLAQWPPTLVSPLLARRADGELFWHVLAGM 188 Query: 189 RDRHGAATMPGFTRQLTDNDVWALIDFMKANAAGASIRAIGAWDQPVALPAEAADCGKQA 248 RDRHG TMP F L D++ WA+ID+MKA +AG+ A G W P+ LP A C A Sbjct: 189 RDRHGQPTMPAFRDTLGDSEAWAVIDYMKALSAGSGAGADGNWPVPLRLPEMAVRCVDAA 248 Query: 249 -----TQTGGQRVRVILASAQQSAALPFDDPRLRSV-VLADGALKLPAPQAGAPAIDCLS 302 QRVR++ + +A LP++DPR +V V DG P+ A C + Sbjct: 249 PLALSQWRADQRVRLV--AVDGAAPLPYEDPRFLTVLVTPDGRPPAQVPRFRA---GCTA 303 Query: 303 RSKDAWQALSIITGIDSDQLAGTQLLTDRDGWLRARKLPADSNGAWSESDILC-RAPAEM 361 S AWQA++ I G +LAGTQLL DR GWLRAR P WS++D++C P+ Sbjct: 304 TSPHAWQAVAAIAGESPARLAGTQLLADRTGWLRARGAPGRQ---WSDADLVCVSGPSAN 360 Query: 362 AAGKSNKPG-GLDSLIAAMDAEPVRFVKGGFVH 393 + +P GL +L+ MDAEPVRFVKGGF+H Sbjct: 361 TPRNAAEPADGLTALLLRMDAEPVRFVKGGFIH 393 >ref|YP_001892976.1| cytochrome c class I [Ralstonia pickettii 12J] ref|YP_002984502.1| cytochrome C class I [Ralstonia pickettii 12D] gb|ACD29549.1| cytochrome c class I [Ralstonia pickettii 12J] gb|ACS65830.1| cytochrome c class I [Ralstonia pickettii 12D] Length = 388 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 184/391 (47%), Positives = 238/391 (60%), Gaps = 17/391 (4%) Query: 9 WINLLLGAIQVLQDGFLHALAALGLAQTSHGQPAWPFAERLSGDVLLIDRSIARQLLSAL 68 W+N LLG +Q Q G L + LGL +HGQPAWP+ R++G+ LLID A+QL L Sbjct: 9 WLNALLGFLQWAQHGVLVLMHTLGLTGEAHGQPAWPWDVRIAGETLLIDLGQAQQLGLTL 68 Query: 69 GFSLAALLALVIALAWRRGRVVMLLATVALVFFTPWPDRHLLLAPAEPTSFHTSPTGFSA 128 + ALLA+VIA+ RR R V L+ PWP +++APA PTSFH SPT FS Sbjct: 69 IALMLALLAVVIAVLVRRWRPVSSGVAAGLLVVAPWPSA-VVVAPAVPTSFHVSPTAFSV 127 Query: 129 AAIVHGRQVYEQRCASCHAIDGKGDTPLALSLPVSPPNLASGLLWRRADGELFWKIAYGA 188 A+I G ++Y CASCH DG+G+ PLA +L PP + LL R ADGELFW IA+G Sbjct: 128 ASITQGTRIYNAACASCHGADGRGEGPLAATLTRWPPTVVGPLLGRHADGELFWHIAHGM 187 Query: 189 RDRHGAATMPGFTRQLTDNDVWALIDFMKANAAGASIRAIGAWDQPVALPAEAADCGKQ- 247 +D GA+TMP F +L+D D+WA++D MK AA +RA G W PVALPA + CG Sbjct: 188 QDTQGASTMPAFAGRLSDADIWAVLDAMKVLAARGGVRA-GGWPLPVALPALSVRCGDAL 246 Query: 248 ----ATQTGGQRVRVILASAQQSAALPFDDPRLRSVVLA-DGALKLPAPQAGAPAIDCLS 302 AT GQRVRV+ A S +P +DPR +++++ DG +LP P A C++ Sbjct: 247 PQSLATWRNGQRVRVVAVDAASSTDIPLEDPRFQTLLITPDG--RLPPPTRAFQA-RCVA 303 Query: 303 RSKDAWQALSIITGIDSDQLAGTQLLTDRDGWLRARKLPADSNGAWSESDILCRAPAEMA 362 DAW + I G +GTQLL DR+GWLRAR P + WS++D LC + A Sbjct: 304 TGADAWSVFAAIAGAAPQAFSGTQLLADRNGWLRARGAPGTT---WSDADFLCTSAAR-- 358 Query: 363 AGKSNKPGGLDSLIAAMDAEPVRFVKGGFVH 393 G + GLDSLIA MDAEPVR+VKGGF+H Sbjct: 359 -GTARSTSGLDSLIARMDAEPVRYVKGGFIH 388 >ref|YP_002008217.1| hypothetical protein RALTA_B1568 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72163.1| conserved hypothetical protein, haem motif [Cupriavidus taiwanensis LMG 19424] Length = 391 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 192/393 (48%), Positives = 240/393 (61%), Gaps = 18/393 (4%) Query: 9 WINLLLGAIQVLQDGFLHALAALGLAQTSHGQPAWPFAERLSGDVLLIDRSIARQLLSAL 68 W+N LL I+ LQ G L ALGL SHGQPAWP+ R++G+ LLID +ARQL L Sbjct: 9 WLNALLVLIEALQRGLLALWHALGLTGDSHGQPAWPWTWRVAGETLLIDLGLARQLGLTL 68 Query: 69 GFSLAALLALVIALAWRRGRVVMLLATVALVFFTPWPDRHLLLAPAEPTSFHTSPTGFSA 128 A+LA+ +ALAWRR R V+L A + PWP LL PA PTSFHTSP FS Sbjct: 69 CALAVAVLAVALALAWRRRRGVLLAAGALALVAAPWPSVSLLFVPAAPTSFHTSPARFSV 128 Query: 129 AAIVHGRQVYEQRCASCHAIDGKGDTPLALSLPVSPPNLASGLLWRRADGELFWKIAYGA 188 I G +VY Q CA+CH DG+G+ PLA SL V PP LA LL RRADGELFW + G Sbjct: 129 DTIALGARVYAQHCAACHGTDGRGEGPLAASLAVWPPTLAGPLLARRADGELFWHVLAGM 188 Query: 189 RDRHGAATMPGFTRQLTDNDVWALIDFMKANAAGASIRAIGAWDQPVALPAEAADCGKQA 248 RDRHG TMP F +L D + WA+ID+MKA +AG+ + G W P+ LP A C A Sbjct: 189 RDRHGQPTMPAFRDRLGDGEAWAVIDYMKALSAGSG--SAGNWPVPLQLPEMAVRCAGAA 246 Query: 249 -----TQTGGQRVRVILASAQQSAALPFDDPRLRSV-VLADGALKLPAPQAGAPAIDCLS 302 GGQRVR++ + ++ALPF+DPR +V V ADG P+ A C + Sbjct: 247 PVALSAWRGGQRVRLV--AVDGASALPFEDPRFLTVLVTADGRPPAQVPRFRA---GCTA 301 Query: 303 RSKDAWQALSIITGIDSDQLAGTQLLTDRDGWLRARKLPADSNGAWSESDILCRAPAEMA 362 S AWQA++ I+G +LAGTQLL DR GWLRAR P AWS++D++C + Sbjct: 302 ASAHAWQAVAAISGQAPARLAGTQLLADRAGWLRARGTPGR---AWSDADLVCVSGPAAG 358 Query: 363 AGKSNKPG--GLDSLIAAMDAEPVRFVKGGFVH 393 + ++ PG GL +L+ MD EPVRFVKGGFVH Sbjct: 359 SQRAPSPGADGLTALLLRMDDEPVRFVKGGFVH 391 >ref|YP_841381.1| cytochrome c, mono-and diheme variants [Ralstonia eutropha H16] emb|CAJ96651.1| cytochrome c, mono-and diheme variants [Ralstonia eutropha H16] Length = 391 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 188/393 (47%), Positives = 233/393 (59%), Gaps = 18/393 (4%) Query: 9 WINLLLGAIQVLQDGFLHALAALGLAQTSHGQPAWPFAERLSGDVLLIDRSIARQLLSAL 68 W+N LL I+ Q L ALGL SHGQPAWP+A R++G+ LLID +ARQ+ +L Sbjct: 9 WLNALLVLIEKFQLALLSLWHALGLTGDSHGQPAWPWARRVAGETLLIDLGLARQVGLSL 68 Query: 69 GFSLAALLALVIALAWRRGRVVMLLATVALVFFTPWPDRHLLLAPAEPTSFHTSPTGFSA 128 + A+LA+ ALAWRR R V+L A + PWP LLL PA PTSFH SPT FS Sbjct: 69 CALVFAVLAITAALAWRRHRGVLLAAGALALVAAPWPSAALLLVPAAPTSFHASPTRFSV 128 Query: 129 AAIVHGRQVYEQRCASCHAIDGKGDTPLALSLPVSPPNLASGLLWRRADGELFWKIAYGA 188 AI G +VY Q CASCH DG+G+ PLA SL PP L S LL RR DGELFW + G Sbjct: 129 DAIALGARVYAQHCASCHGADGRGEGPLAASLAQWPPTLVSPLLARRVDGELFWHVLAGM 188 Query: 189 RDRHGAATMPGFTRQLTDNDVWALIDFMKANAAGASIRAIGAWDQPVALPAEAADCGKQA 248 RDRHG TMP F L + WA+ID+MKA +AG A G W P+ LP A C A Sbjct: 189 RDRHGQPTMPAFGNVLGLREAWAVIDYMKALSAGGG--AEGNWPVPLRLPEMAIRCADAA 246 Query: 249 -----TQTGGQRVRVILASAQQSAALPFDDPRLRSV-VLADGALKLPAPQAGAPAIDCLS 302 G QRVR++ + A+LPF+DPR +V V DG P+ A C + Sbjct: 247 PLALSQWRGDQRVRLV--AVDGMASLPFEDPRFLTVLVTPDGQPPAQVPRFRA---GCAA 301 Query: 303 RSKDAWQALSIITGIDSDQLAGTQLLTDRDGWLRARKLPADSNGAWSESDILCRAPAEMA 362 S AWQA++ I G +LAGTQLL DR GWLRAR P WS++D++C + + Sbjct: 302 VSSHAWQAVAAIAGQSPSRLAGTQLLADRGGWLRARGTPGRQ---WSDADLVCVSGPDAG 358 Query: 363 AGKSNKPG--GLDSLIAAMDAEPVRFVKGGFVH 393 A ++ P GL +L+ MDAEPVRFVKGGF+H Sbjct: 359 AQRAPSPATDGLTALLLRMDAEPVRFVKGGFIH 391