BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0053.p (588 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776540.1| methyl-accepting chemotaxis transducer trans... 676 0.0 ref|ZP_04948532.1| Methyl-accepting chemotaxis protein [Burkhold... 549 e-154 ref|ZP_02884518.1| methyl-accepting chemotaxis sensory transduce... 535 e-150 ref|YP_003910539.1| methyl-accepting chemotaxis sensory transduc... 532 e-149 ref|YP_004230551.1| methyl-accepting chemotaxis sensory transduc... 527 e-147 >ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64632.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/521 (71%), Positives = 430/521 (82%) Query: 1 MRNITVRFSLMSALALFAAMIVFGAAVGVFALGRANESTVTVHDVASRALTINDAYKDTT 60 MRN+TVRFSLMSALALF+ MIV GA VG+FALGRAN +T VH++ RAL INDAYKDTT Sbjct: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 Query: 61 RTRAALTRGYSALKEQNDQEVKNSALKSAQASYDRTLKLLDEFDKAAPFKGQDDKLKADL 120 RTRAA R Y+ L E+ DQ V +SALKSA+ +Y+R+LK LDE+ K +GQD K +L Sbjct: 61 RTRAAHGRMYATLMEKGDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPATKTEL 120 Query: 121 VNAGRQLSDVLNKAADALRANDTNAYVEINSRDITSRGANFSTQLEKFQKLTKDISEDIV 180 + + + L++VL KA D L+A D Y ++N+ I+ GA FST L+ +QK ++++++ Sbjct: 121 LESAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELNDNVT 180 Query: 181 AQRDREYHMVVWLVAAGLVAALILVLGVHFLLRGIVLTPLNRAVALLDQVAGGDLTMKIS 240 QR REY++VVWLV GL+ A+ LV+GVHFLLR IVLTPLNRAV LLD VA GDLT K+ Sbjct: 181 TQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVE 240 Query: 241 EPGRNEIGRLFASIRSMQQGLLSTVARVRSSTDIINTGAQEIAAGNLDLSSRTETQASSL 300 NEIGRLF++IRSMQQ LL+TV+RVRSS+D I+T A+EIAAGN+DLSSRTE QASSL Sbjct: 241 VASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSL 300 Query: 301 EETAASMEQLTGTVKQNAENAQQANQLAHSASETAVKGGEVVAQVVDTMTAINDSSKKIV 360 EETAASME+LTGTVKQNAENA QANQLAHSAS TA KGGEVV+QVVDTM AINDSS+KIV Sbjct: 301 EETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIV 360 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIT 420 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK LI Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 420 Query: 421 DSVDKVESGSRLVEQAGLTMGEVVGSVRRVTDIVGEISSASLEQSDGIAQVNRAIAQMDE 480 DSV+KVE+GS+LVEQAG TM EVV SV+RVTDIVGEI+ AS EQS GI QVNRAI QMDE Sbjct: 421 DSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 480 Query: 481 VTQQNAALVEEAAAAAQSLQTQAVTLAEAVSIFRMEAHTAA 521 VTQQNAALVEEAAAAAQSLQ QA L AVSIF++EAH A Sbjct: 481 VTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQVA 521 >ref|ZP_04948532.1| Methyl-accepting chemotaxis protein [Burkholderia dolosa AUO158] gb|EAY71703.1| Methyl-accepting chemotaxis protein [Burkholderia dolosa AUO158] Length = 519 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 288/518 (55%), Positives = 386/518 (74%), Gaps = 1/518 (0%) Query: 1 MRNITVRFSLMSALALFAAMIVFGAAVGVFALGRANESTVTVHDVASRALTINDAYKDTT 60 MR++ V+ SL++ LA FA MIV G AVG+ ALG AN + +H++A++ L +NDAYKD+T Sbjct: 1 MRDLKVKNSLLAVLATFATMIVIGGAVGIVALGNANTNAKRLHEIAAQTLIVNDAYKDST 60 Query: 61 RTRAALTRGYSALKEQNDQEVKNSALKSAQASYDRTLKLLDEFDKAAPFKGQDDKLKADL 120 RTR+AL R Y+ALKE ND ++SAL+SAQ ++D + K F G D LK L Sbjct: 61 RTRSALVRAYAALKEHNDPAQRDSALQSAQRTFDLSAKETQAFQSMPTIDGVDADLKRAL 120 Query: 121 VNAGRQLSDVLNKAADALRANDTNAYVEINSRDITSRGANFSTQLEKFQKLTKDISEDIV 180 V++ QL+ +L +AADALR+ DT AY IN ++IT G +S +EKFQ++ +SED + Sbjct: 121 VDSSTQLATILARAADALRSGDTAAYATINDKEITIAGQVYSANVEKFQRVANKLSEDTI 180 Query: 181 AQRDREYHMVVWLVAAGLVAALILVLGVHFLLRGIVLTPLNRAVALLDQVAGGDLTMKIS 240 A + Y ++ +V G+ AL L++ HF LR IV PL A ALLD++A DLT+ + Sbjct: 181 ADDNAAYTRIIAMVGIGVALALALIVATHFALRRIVSQPLANAAALLDRIASNDLTVNVP 240 Query: 241 EPGRNEIGRLFASIRSMQQGLLSTVARVRSSTDIINTGAQEIAAGNLDLSSRTETQASSL 300 + GRNEIG+LFA+++ M+ GL +TVA +R S+D I+T A+EIAAGNLDLSSRTE Q++SL Sbjct: 241 DAGRNEIGQLFAAMKRMRAGLAATVAGMRDSSDAIHTAAREIAAGNLDLSSRTEEQSASL 300 Query: 301 EETAASMEQLTGTVKQNAENAQQANQLAHSASETAVKGGEVVAQVVDTMTAINDSSKKIV 360 EETAASMEQLT TV+QNA+NAQQA+ LA SA++ A +GGE+V + VD M IN SS+KI Sbjct: 301 EETAASMEQLTSTVRQNADNAQQASTLAASAADLAQQGGELVGRAVDMMGVINASSQKIA 360 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIT 420 +I ++IDGIAFQTNILALNAAVE+ARAGE GRGFAVVA EVR+LAQRSA+AA+EI+QLI Sbjct: 361 EITAMIDGIAFQTNILALNAAVESARAGEHGRGFAVVAGEVRTLAQRSASAAREIRQLIG 420 Query: 421 DSVDKVESGSRLVEQAGLTMGEVVGSVRRVTDIVGEISSASLEQSDGIAQVNRAIAQMDE 480 S+D V +G+ LV QAG M E+V SVRRV I+ EI++A++EQS GI QV +A+ QMD Sbjct: 421 ASIDDVRNGNELVSQAGRAMDEIVSSVRRVATIMTEITTATVEQSAGIDQVGQAVTQMDR 480 Query: 481 VTQQNAALVEEAAAAAQSLQTQAVTLAEAVSIFRMEAH 518 +TQQNAALVE+A+AAA +L+ QA ++ A+S+FR+ AH Sbjct: 481 MTQQNAALVEQASAAATALENQASSMQAAMSVFRI-AH 517 >ref|ZP_02884518.1| methyl-accepting chemotaxis sensory transducer [Burkholderia graminis C4D1M] gb|EDT10056.1| methyl-accepting chemotaxis sensory transducer [Burkholderia graminis C4D1M] Length = 516 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 295/515 (57%), Positives = 386/515 (74%) Query: 1 MRNITVRFSLMSALALFAAMIVFGAAVGVFALGRANESTVTVHDVASRALTINDAYKDTT 60 MR++TV+ SL++ L +FAAMI+FG VGVFALGR+NE+ + ++A++ + ND YKD+T Sbjct: 1 MRDLTVKNSLLAVLVVFAAMIMFGGVVGVFALGRSNENAQRLQEIATQEILANDGYKDST 60 Query: 61 RTRAALTRGYSALKEQNDQEVKNSALKSAQASYDRTLKLLDEFDKAAPFKGQDDKLKADL 120 RTRAALTR Y+ALKE+ND ++SAL SAQ + DR F A+ F GQDD LK L Sbjct: 61 RTRAALTRAYAALKERNDLATRDSALGSAQRTLDRADAETRAFAAASRFVGQDDALKQQL 120 Query: 121 VNAGRQLSDVLNKAADALRANDTNAYVEINSRDITSRGANFSTQLEKFQKLTKDISEDIV 180 V++ L+ L KA DAL+ DT+AYV IN RDIT G +S +EKFQ L ++++ Sbjct: 121 VDSSNGLAATLKKAFDALQRGDTDAYVAINDRDITLAGQVYSANVEKFQNLAGALAKESA 180 Query: 181 AQRDREYHMVVWLVAAGLVAALILVLGVHFLLRGIVLTPLNRAVALLDQVAGGDLTMKIS 240 + +REY +V +V G+ AL L++ HF LR IV+ PL +A LLD++AG DLT I Sbjct: 181 TRTEREYGWIVAMVLTGVALALALIVATHFALRTIVIRPLQQASKLLDRIAGNDLTASIP 240 Query: 241 EPGRNEIGRLFASIRSMQQGLLSTVARVRSSTDIINTGAQEIAAGNLDLSSRTETQASSL 300 E ++EIG+LF S+ MQ GL TV+ VR S + I+ GA+EIAAGNLDLSSRTE Q++SL Sbjct: 241 EGSKSEIGKLFTSMSRMQAGLAHTVSNVRVSCEAIHGGAREIAAGNLDLSSRTEEQSTSL 300 Query: 301 EETAASMEQLTGTVKQNAENAQQANQLAHSASETAVKGGEVVAQVVDTMTAINDSSKKIV 360 EETAASME+LT TV+QNA+NA+QA+ LA SA++ A +GG+VV + V TMTAI SS KI Sbjct: 301 EETAASMEELTSTVRQNADNARQASTLAASAADVAQRGGDVVQRAVHTMTAITASSHKIA 360 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIT 420 +I +ID IAFQTNILALNAAVE+ARAGEQGRGFAVVA EVR+LAQRSA+AA+EIK LI+ Sbjct: 361 EITGMIDSIAFQTNILALNAAVESARAGEQGRGFAVVAGEVRTLAQRSASAAQEIKALIS 420 Query: 421 DSVDKVESGSRLVEQAGLTMGEVVGSVRRVTDIVGEISSASLEQSDGIAQVNRAIAQMDE 480 SVD V SG+ LV QAG TM E+VG+V+ V I+ EI+SA++EQ+ GI QV +A++QMD+ Sbjct: 421 ASVDDVRSGNELVTQAGHTMNEIVGAVQGVATIMAEITSATVEQTAGIEQVGKAVSQMDQ 480 Query: 481 VTQQNAALVEEAAAAAQSLQTQAVTLAEAVSIFRM 515 VTQQNAALVE+AAAAA +L+ QA ++ +AVS FR+ Sbjct: 481 VTQQNAALVEQAAAAASALEHQAQSMNDAVSAFRL 515 >ref|YP_003910539.1| methyl-accepting chemotaxis sensory transducer [Burkholderia sp. CCGE1003] gb|ADN61248.1| methyl-accepting chemotaxis sensory transducer [Burkholderia sp. CCGE1003] Length = 516 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 292/516 (56%), Positives = 386/516 (74%) Query: 1 MRNITVRFSLMSALALFAAMIVFGAAVGVFALGRANESTVTVHDVASRALTINDAYKDTT 60 MR++TV+ SL++ L +FAAMI+FG VGVFALGR+NE+ + ++A++ + ND YKD+T Sbjct: 1 MRDLTVKKSLLAVLVIFAAMIMFGGVVGVFALGRSNENAQRLQEIATQEILANDGYKDST 60 Query: 61 RTRAALTRGYSALKEQNDQEVKNSALKSAQASYDRTLKLLDEFDKAAPFKGQDDKLKADL 120 RTRAALTR Y+ALKE+ND ++SAL SAQ + DR F A F GQDD LK L Sbjct: 61 RTRAALTRAYAALKERNDVATRDSALGSAQRTLDRADAETRAFASAPRFVGQDDALKQQL 120 Query: 121 VNAGRQLSDVLNKAADALRANDTNAYVEINSRDITSRGANFSTQLEKFQKLTKDISEDIV 180 V++ L+ L +A DAL+ DT AYV IN RDIT G +S +EKFQ L ++++ Sbjct: 121 VDSSNALAATLKRAFDALQRGDTEAYVAINDRDITLAGQAYSANVEKFQNLAGALAKESA 180 Query: 181 AQRDREYHMVVWLVAAGLVAALILVLGVHFLLRGIVLTPLNRAVALLDQVAGGDLTMKIS 240 A+ +REY ++V +V G+ AL L++ HF LR IV+ PL +A LLD++AG DLT I Sbjct: 181 ARNEREYGLIVGMVITGVALALALIVATHFALRTIVIGPLQQASKLLDRIAGNDLTASIP 240 Query: 241 EPGRNEIGRLFASIRSMQQGLLSTVARVRSSTDIINTGAQEIAAGNLDLSSRTETQASSL 300 + R+EIG+LF S+ MQ GL TV+ VR + + I+ GA+EIAAGNLDLSSRTE Q++SL Sbjct: 241 DGSRSEIGQLFRSMSRMQAGLAHTVSNVRVNCEAIHGGAREIAAGNLDLSSRTEQQSASL 300 Query: 301 EETAASMEQLTGTVKQNAENAQQANQLAHSASETAVKGGEVVAQVVDTMTAINDSSKKIV 360 EETAASME+LT TV+QNA+NA+QA+ LA SA++ A +GG+VV + V TM+AI SS KI Sbjct: 301 EETAASMEELTSTVRQNADNARQASTLAASAADVAQRGGDVVQRAVQTMSAITASSHKIA 360 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIT 420 +I +ID IAFQTNILALNAAVE+ARAGEQGRGFAVVA EVR+LAQRSA+AA+EIK LI+ Sbjct: 361 EITGMIDSIAFQTNILALNAAVESARAGEQGRGFAVVAGEVRTLAQRSASAAQEIKALIS 420 Query: 421 DSVDKVESGSRLVEQAGLTMGEVVGSVRRVTDIVGEISSASLEQSDGIAQVNRAIAQMDE 480 SVD V +G+ LV QAG TM E+VG+V+ V I+ EI+SA++EQ+ GI QV +A++QMD+ Sbjct: 421 ASVDDVRNGNELVTQAGQTMNEIVGAVQGVATIMAEITSATVEQTAGIEQVGKAVSQMDQ 480 Query: 481 VTQQNAALVEEAAAAAQSLQTQAVTLAEAVSIFRME 516 VTQQNAALVE+AAAAA +L+ QA ++ +AVS FR+ Sbjct: 481 VTQQNAALVEQAAAAASALEHQAQSMTDAVSAFRLH 516 >ref|YP_004230551.1| methyl-accepting chemotaxis sensory transducer [Burkholderia sp. CCGE1001] gb|ADX57491.1| methyl-accepting chemotaxis sensory transducer [Burkholderia sp. CCGE1001] Length = 516 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 295/515 (57%), Positives = 387/515 (75%) Query: 1 MRNITVRFSLMSALALFAAMIVFGAAVGVFALGRANESTVTVHDVASRALTINDAYKDTT 60 MR++TV+ SL++ L +FAAMI+FG VGV ALGR+NE+ + ++AS+ + ND YKD+T Sbjct: 1 MRDLTVKKSLLAVLVVFAAMIMFGGVVGVLALGRSNENAQRLQEIASQEILANDGYKDST 60 Query: 61 RTRAALTRGYSALKEQNDQEVKNSALKSAQASYDRTLKLLDEFDKAAPFKGQDDKLKADL 120 RTRAALTR Y+ALKE+ND ++SAL SAQ + DR +F A+ F GQDD LK L Sbjct: 61 RTRAALTRAYAALKERNDLATRDSALGSAQRTLDRADAETRDFASASRFVGQDDALKQQL 120 Query: 121 VNAGRQLSDVLNKAADALRANDTNAYVEINSRDITSRGANFSTQLEKFQKLTKDISEDIV 180 V++ L+ L KA DAL+ DT+AYV IN RDIT G +S +EKFQ L +++D Sbjct: 121 VDSSNALAATLKKAFDALQRGDTDAYVAINDRDITLAGQAYSANVEKFQNLASALAKDSA 180 Query: 181 AQRDREYHMVVWLVAAGLVAALILVLGVHFLLRGIVLTPLNRAVALLDQVAGGDLTMKIS 240 A+ REY +V +V G+ AL L++ HF LR IV+ PL +A LLD++AG DLT I Sbjct: 181 ARNAREYGWIVAMVLTGVALALALIVAAHFALRTIVIGPLQQASKLLDRIAGNDLTASIP 240 Query: 241 EPGRNEIGRLFASIRSMQQGLLSTVARVRSSTDIINTGAQEIAAGNLDLSSRTETQASSL 300 E ++EIG+LF+S+ MQ GL TV+ VR + + I+ GA+EIAAGNLDLSSRTE Q++SL Sbjct: 241 EGSKSEIGQLFSSMSRMQSGLAHTVSNVRVNCEAIHGGAREIAAGNLDLSSRTEQQSASL 300 Query: 301 EETAASMEQLTGTVKQNAENAQQANQLAHSASETAVKGGEVVAQVVDTMTAINDSSKKIV 360 EETAASME+LT TV+QNA+NA+QA+ LA SA++ A +GG+VV + V TMTAI SS KI Sbjct: 301 EETAASMEELTSTVRQNADNARQASTLAASAADVAQRGGDVVQRAVQTMTAITASSHKIA 360 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIT 420 +I +ID IAFQTNILALNAAVE+ARAGEQGRGFAVVA EVR+LAQRSA+AA+EIK LI+ Sbjct: 361 EITGMIDSIAFQTNILALNAAVESARAGEQGRGFAVVAGEVRTLAQRSASAAQEIKALIS 420 Query: 421 DSVDKVESGSRLVEQAGLTMGEVVGSVRRVTDIVGEISSASLEQSDGIAQVNRAIAQMDE 480 SVD V +G+ LV QAG TM E+VG+V+ V I+ EI+SA++EQ+ GI QV +A++QMD+ Sbjct: 421 ASVDDVRNGNELVTQAGQTMNEIVGAVQGVATIMAEITSATVEQTAGIEQVGKAVSQMDQ 480 Query: 481 VTQQNAALVEEAAAAAQSLQTQAVTLAEAVSIFRM 515 VTQQNAALVE+AAAAA +L+ QA ++ +AVS FR+ Sbjct: 481 VTQQNAALVEQAAAAASALEHQAQSMTDAVSAFRL 515