BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0048.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776539.1| 5-dehydro-4-deoxyglucarate dehydratase [Herb... 468 e-130 ref|YP_002235115.1| 5-dehydro-4-deoxyglucarate dehydratase [Burk... 427 e-118 ref|YP_001116013.1| 5-dehydro-4-deoxyglucarate dehydratase [Burk... 427 e-118 ref|YP_776560.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkhol... 426 e-117 ref|ZP_02904950.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkh... 426 e-117 >ref|YP_003776539.1| 5-dehydro-4-deoxyglucarate dehydratase [Herbaspirillum seropedicae SmR1] gb|ADJ64631.1| 5-dehydro-4-deoxyglucarate dehydratase protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 233/303 (76%), Positives = 247/303 (81%), Gaps = 42/303 (13%) Query: 2 YTPQDLKQILSAGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGAS-------------- 47 YTPQDLKQILS+GLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGAS Sbjct: 4 YTPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEFFSL 63 Query: 48 ----------------------------XTRAAIGYAQEAERLGAHGILLMPHYLTEASQ 79 TRAAI YAQEAERLGAHGILLMPHYLTEASQ Sbjct: 64 VPGEYSDIIRTAVDTCRGKVPIIAGAGGSTRAAIAYAQEAERLGAHGILLMPHYLTEASQ 123 Query: 80 EGIAEHVEAVCKSVKFGVIIYNRGVCRLNADMLERLADRCPNLIGFKDGVGEIESMVTIR 139 +GIA HVEAVCKSVKFGVIIYNR VC+LNAD L++LADRCPNLIGFKDG+GEIE MV IR Sbjct: 124 DGIAAHVEAVCKSVKFGVIIYNRAVCKLNADTLQKLADRCPNLIGFKDGIGEIEPMVHIR 183 Query: 140 RRLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMDFYHAIAREDHATVGK 199 R+LGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTA++FY AIA+EDH TVGK Sbjct: 184 RKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDHDTVGK 243 Query: 200 LIDDFFLPYLAIRNRKAGYAVSIVKAGARVVGHDAGPVRTPLTACTEAEHEELAALIKRL 259 LID+FFLPYLAIRNRKAGYAVSIVKAGAR+ GHDAGPVRTPLT CT EHEELAAL+ +L Sbjct: 244 LIDEFFLPYLAIRNRKAGYAVSIVKAGARIAGHDAGPVRTPLTDCTPEEHEELAALMNKL 303 Query: 260 GPQ 262 GPQ Sbjct: 304 GPQ 306 >ref|YP_002235115.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia cenocepacia J2315] emb|CAR56377.1| putative 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia cenocepacia J2315] Length = 304 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/304 (70%), Positives = 234/304 (76%), Gaps = 42/304 (13%) Query: 1 MYTPQDLKQILSAGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASX------------ 48 M +PQ+LKQI+S GLLSFPLTDFD G FRP TY ERLEWLAPYGAS Sbjct: 1 MTSPQELKQIISHGLLSFPLTDFDADGSFRPSTYAERLEWLAPYGASALFAAGGTGEFFS 60 Query: 49 ------------------------------TRAAIGYAQEAERLGAHGILLMPHYLTEAS 78 TR AI YAQEAERLGA G+LLMPHYLTEAS Sbjct: 61 LTQREYSDVIRVATETCKGKVPILAGAGGATRVAIEYAQEAERLGASGVLLMPHYLTEAS 120 Query: 79 QEGIAEHVEAVCKSVKFGVIIYNRGVCRLNADMLERLADRCPNLIGFKDGVGEIESMVTI 138 QEGIA+HVE VC+++K GV++YNR +LNADMLERLADRCPNLIGFKDGVGEIESMVTI Sbjct: 121 QEGIADHVEQVCRALKIGVVVYNRANSKLNADMLERLADRCPNLIGFKDGVGEIESMVTI 180 Query: 139 RRRLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMDFYHAIAREDHATVG 198 RRRLGDRF YLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAM FY AIA++DHATVG Sbjct: 181 RRRLGDRFAYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMAFYEAIAKDDHATVG 240 Query: 199 KLIDDFFLPYLAIRNRKAGYAVSIVKAGARVVGHDAGPVRTPLTACTEAEHEELAALIKR 258 +LID+FFLPYL IRNR+AGYAVSIVKAGA++VGHDAGPVR PL TEAE EL LI++ Sbjct: 241 RLIDEFFLPYLKIRNRRAGYAVSIVKAGAKLVGHDAGPVRAPLVDLTEAEAAELDVLIRK 300 Query: 259 LGPQ 262 +GPQ Sbjct: 301 MGPQ 304 >ref|YP_001116013.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia vietnamiensis G4] gb|ABO56548.1| dihydrodipicolinate synthetase [Burkholderia vietnamiensis G4] Length = 304 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/304 (70%), Positives = 235/304 (77%), Gaps = 42/304 (13%) Query: 1 MYTPQDLKQILSAGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASX------------ 48 M +PQ+LKQI+S GLLSFPLTDFDEQ +FRP TY ERLEWLAPYGA+ Sbjct: 1 MTSPQELKQIISHGLLSFPLTDFDEQRNFRPSTYAERLEWLAPYGATALFAAGGTGEFFS 60 Query: 49 ------------------------------TRAAIGYAQEAERLGAHGILLMPHYLTEAS 78 TR AI YAQEAERLGA G+LLMPHYLTEAS Sbjct: 61 LTQREYSDVIRVATETCKGKVPILAGAGGATRVAIEYAQEAERLGASGVLLMPHYLTEAS 120 Query: 79 QEGIAEHVEAVCKSVKFGVIIYNRGVCRLNADMLERLADRCPNLIGFKDGVGEIESMVTI 138 QEGIAEHVE VC+++K GV++YNR +LNADMLERLADRCPNLIGFKDGVGEIESMVTI Sbjct: 121 QEGIAEHVEQVCRALKIGVVVYNRANSKLNADMLERLADRCPNLIGFKDGVGEIESMVTI 180 Query: 139 RRRLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMDFYHAIAREDHATVG 198 RRRLGDRF YLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAM FY AIA++DHATVG Sbjct: 181 RRRLGDRFAYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMAFYEAIAKDDHATVG 240 Query: 199 KLIDDFFLPYLAIRNRKAGYAVSIVKAGARVVGHDAGPVRTPLTACTEAEHEELAALIKR 258 +LID+FFLPYL IRNR+AGYAVSIVKAGA++VGHDAGPVR PL T+ E EL LIK+ Sbjct: 241 RLIDEFFLPYLKIRNRRAGYAVSIVKAGAKLVGHDAGPVRAPLIDLTDDEMAELDVLIKK 300 Query: 259 LGPQ 262 +GPQ Sbjct: 301 MGPQ 304 >ref|YP_776560.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia ambifaria AMMD] ref|ZP_02891084.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia ambifaria IOP40-10] ref|YP_001811865.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia ambifaria MC40-6] gb|ABI90226.1| dihydrodipicolinate synthetase [Burkholderia ambifaria AMMD] gb|EDT03330.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia ambifaria IOP40-10] gb|ACB67649.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia ambifaria MC40-6] Length = 304 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/304 (69%), Positives = 234/304 (76%), Gaps = 42/304 (13%) Query: 1 MYTPQDLKQILSAGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASX------------ 48 M +PQ+LKQI+S GLLSFPLTDFD G FRP TY ERLEWLAPYGA+ Sbjct: 1 MTSPQELKQIISHGLLSFPLTDFDADGSFRPTTYAERLEWLAPYGATALFAAGGTGEFFS 60 Query: 49 ------------------------------TRAAIGYAQEAERLGAHGILLMPHYLTEAS 78 TR AI YAQEAERLGA G+LLMPHYLTEAS Sbjct: 61 LTQREYSDVIRVATETCKGKVPILAGAGGATRVAIEYAQEAERLGASGVLLMPHYLTEAS 120 Query: 79 QEGIAEHVEAVCKSVKFGVIIYNRGVCRLNADMLERLADRCPNLIGFKDGVGEIESMVTI 138 QEGIAEHVE VC+++K GV++YNR +LNADMLERLADRCPNLIGFKDGVGEIESMVTI Sbjct: 121 QEGIAEHVEQVCRALKIGVVVYNRANSKLNADMLERLADRCPNLIGFKDGVGEIESMVTI 180 Query: 139 RRRLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMDFYHAIAREDHATVG 198 RRRLGDRF YLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAM+FY AIA++DHATVG Sbjct: 181 RRRLGDRFAYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMEFYEAIAKDDHATVG 240 Query: 199 KLIDDFFLPYLAIRNRKAGYAVSIVKAGARVVGHDAGPVRTPLTACTEAEHEELAALIKR 258 +LID+FFLPYL IRNR+AGYAVSIVKAGA++VGHDAGPVR PL +AE EL LIK+ Sbjct: 241 RLIDEFFLPYLQIRNRRAGYAVSIVKAGAKLVGHDAGPVRAPLVDLNDAEVAELDVLIKK 300 Query: 259 LGPQ 262 +GPQ Sbjct: 301 MGPQ 304 >ref|ZP_02904950.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia ambifaria MEX-5] gb|EDT43905.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia ambifaria MEX-5] Length = 304 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 213/304 (70%), Positives = 233/304 (76%), Gaps = 42/304 (13%) Query: 1 MYTPQDLKQILSAGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASX------------ 48 M +PQ+LKQI+S GLLSFPLTDFD G FR TY ERLEWLAPYGA+ Sbjct: 1 MTSPQELKQIISHGLLSFPLTDFDADGSFRATTYAERLEWLAPYGATALFAAGGTGEFFS 60 Query: 49 ------------------------------TRAAIGYAQEAERLGAHGILLMPHYLTEAS 78 TR AI YAQEAERLGA G+LLMPHYLTEAS Sbjct: 61 LTQREYSDVIRVATETCKGKVPILAGAGGATRVAIEYAQEAERLGASGVLLMPHYLTEAS 120 Query: 79 QEGIAEHVEAVCKSVKFGVIIYNRGVCRLNADMLERLADRCPNLIGFKDGVGEIESMVTI 138 QEGIAEHVE VC+++K GV++YNR +LNADMLERLADRCPNLIGFKDGVGEIESMVTI Sbjct: 121 QEGIAEHVEQVCRALKIGVVVYNRANSKLNADMLERLADRCPNLIGFKDGVGEIESMVTI 180 Query: 139 RRRLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMDFYHAIAREDHATVG 198 RRRLGDRF YLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAM+FY AIA++DHATVG Sbjct: 181 RRRLGDRFAYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMEFYEAIAKDDHATVG 240 Query: 199 KLIDDFFLPYLAIRNRKAGYAVSIVKAGARVVGHDAGPVRTPLTACTEAEHEELAALIKR 258 +LID+FFLPYL IRNR+AGYAVSIVKAGAR+VGHDAGPVR PL +AE EL LIKR Sbjct: 241 RLIDEFFLPYLQIRNRRAGYAVSIVKAGARLVGHDAGPVRAPLVDLNDAEVAELDVLIKR 300 Query: 259 LGPQ 262 +GPQ Sbjct: 301 MGPQ 304