BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0041.p (215 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776565.1| hypothetical protein Hsero_3175 [Herbaspiril... 306 9e-82 ref|NP_744110.1| hypothetical protein PP_1958 [Pseudomonas putid... 159 2e-37 ref|ZP_01216263.1| hypothetical protein PCNPT3_08120 [Psychromon... 134 1e-29 ref|ZP_08407207.1| hypothetical protein HGR_15079 [Hylemonella g... 129 4e-28 ref|ZP_08530007.1| hypothetical protein AGRO_4015 [Agrobacterium... 127 1e-27 >ref|YP_003776565.1| hypothetical protein Hsero_3175 [Herbaspirillum seropedicae SmR1] gb|ADJ64657.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 306 bits (785), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 147/215 (68%), Positives = 175/215 (81%), Gaps = 2/215 (0%) Query: 3 SSNIRPLIPLADYQRIFRVIHSVLDSVDANIPAASFFFSVTAAQILKKFYKKNAFPVAGA 62 + N+RPLIPLADYQRIFRVIHSVL SV+A+IPAASFFFSVTAAQILKKFYK+NAFPVAGA Sbjct: 8 AQNLRPLIPLADYQRIFRVIHSVLHSVEADIPAASFFFSVTAAQILKKFYKRNAFPVAGA 67 Query: 63 AFFLISKDGSGALSFGTL--DGDKVDSNSDAFHCWVQCDGYALDFMAPVFEELLEDAGHP 120 AF+LI D +GALSFGTL DG V S+ DAFH WVQCDGYA+DFMAP+F+ELL AGHP Sbjct: 68 AFYLIHPDRAGALSFGTLAEDGQSVASDKDAFHAWVQCDGYAIDFMAPLFQELLSSAGHP 127 Query: 121 MAVPRQMFQKDLARMAASPTALSALGDFRLEPNLALTRELLQQFMNKPALSNLSQVCMDW 180 + VPR+MFQKDL RM + ALS GDF L P+LALTRELLQQFM K AL+NLSQ+C +W Sbjct: 128 LPVPRRMFQKDLGRMCSGVQALSVPGDFYLAPDLALTRELLQQFMAKKALTNLSQLCQEW 187 Query: 181 YQKPPKELGSGLVMQNAEGDGTRMTLSRLQVTGAW 215 ++KPPK + L +Q A+G+ +R++L + G W Sbjct: 188 FRKPPKAMPDDLALQGADGEISRISLQPTAIDGVW 222 >ref|NP_744110.1| hypothetical protein PP_1958 [Pseudomonas putida KT2440] gb|AAN67574.1|AE016387_1 hypothetical protein PP_1958 [Pseudomonas putida KT2440] Length = 275 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 117/213 (54%) Query: 3 SSNIRPLIPLADYQRIFRVIHSVLDSVDANIPAASFFFSVTAAQILKKFYKKNAFPVAGA 62 S + LIPL DY RI RVI SVLDS A+ A +FFS+ A IL+ Y K A P+AGA Sbjct: 63 SKKSQDLIPLLDYLRIHRVIRSVLDSAGAHTAHACWFFSMAGAAILRHHYHKEAHPLAGA 122 Query: 63 AFFLISKDGSGALSFGTLDGDKVDSNSDAFHCWVQCDGYALDFMAPVFEELLEDAGHPMA 122 + + S L F +++ D+V S+ FH V CD + +DFM+P+F E + A H Sbjct: 123 MCLMADEKKSNVLCFASIENDEVQSSETGFHAMVVCDDHVVDFMSPLFPETSKSAKHDFI 182 Query: 123 VPRQMFQKDLARMAASPTALSALGDFRLEPNLALTRELLQQFMNKPALSNLSQVCMDWYQ 182 P + FQ+ + M SP L GDF +PN+ LT L + ++ C+ WY Sbjct: 183 TPAKSFQRRIDTMTTSPADLKKDGDFFFDPNMQLTDHLELKVAQSLFQKDVINACVAWYV 242 Query: 183 KPPKELGSGLVMQNAEGDGTRMTLSRLQVTGAW 215 +PPK + + +VM + + G+++TL V GAW Sbjct: 243 RPPKPIPAWVVMGDPKEGGSKVTLKEASVIGAW 275 >ref|ZP_01216263.1| hypothetical protein PCNPT3_08120 [Psychromonas sp. CNPT3] gb|EAS38894.1| hypothetical protein PCNPT3_08120 [Psychromonas sp. CNPT3] Length = 207 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 113/208 (54%), Gaps = 3/208 (1%) Query: 9 LIPLADYQRIFRVIHSVLDSVDANIPAASFFFSVTAAQILKKFYKKNAFPVAGAAFFLIS 68 LI L+DYQRI+ + H+VL S +++ + F++ A IL + YK NA +G A + + Sbjct: 2 LITLSDYQRIYSIAHAVLKSENSDTNKSCLFYNYCGAYILNEHYKINAKVYSGFAAYHLG 61 Query: 69 KDGSGALSFGTLDGDKVDSNSDAFHCWVQCDGYALDFMAPVFEELLEDAGHPMAVPRQMF 128 + L FG++ ++ S+ D FH W++ DG+ +DFMAP F ++ G+ +PR+M Sbjct: 62 VEN--ILGFGSIVDGQLKSSEDEFHSWIEADGWLIDFMAPEFPNVMLSKGYDAPIPRKMM 119 Query: 129 QKDLARMAASPTALSALGDFRLEPNLALTRELLQQFMNKPALSNLSQVCMDWYQKPPKEL 188 Q L MA P + GDF + P++ +T+ L + + +L +C W+ K P ++ Sbjct: 120 QSKLDSMAEGPDYIKNSGDFLVIPDMDVTKSLAKHLESSSTFIDLVVICNRWFHKKPNKM 179 Query: 189 GSGLVMQNAEGDGTRMTLSRLQ-VTGAW 215 + + N G ++TLS + + G W Sbjct: 180 HKSISITNGHGQLNQITLSGSKPIIGRW 207 >ref|ZP_08407207.1| hypothetical protein HGR_15079 [Hylemonella gracilis ATCC 19624] gb|EGI75814.1| hypothetical protein HGR_15079 [Hylemonella gracilis ATCC 19624] Length = 211 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 108/210 (51%), Gaps = 3/210 (1%) Query: 7 RPLIPLADYQRIFRVIHSVLDSVD-ANIPAASFFFSVTAAQILKKFYKKNAFPVAGAAFF 65 RPL+PLADYQRI++VI+SVL++ A A FF+ IL+ Y A G+ Sbjct: 4 RPLLPLADYQRIYQVIYSVLEASGLAKTSRACLFFASAGVLILRDHYHLEAMISVGSMAL 63 Query: 66 LISKDGSGALSFGTLDGDKVDSNSDAFHCWVQCDGYALDFMAPVFEELLEDAGHPMAVPR 125 ++ + + L +G + + D FH WV+CDG+ +DFMAP+ + ++ G + +PR Sbjct: 64 MVHEPTATVLIYGREQDGRWQYDEDGFHAWVECDGWLIDFMAPIMGQAFKEDGAAVPIPR 123 Query: 126 QMFQKDLARMAASPTALSALGDFRLEPNLALTRELLQQFMNKPALSNLSQVCMDWYQKPP 185 +M QK LA P A+ G+F E + ++ LL +L ++C+ W+++PP Sbjct: 124 RMLQKPLADRKPHPKAIQHEGEFFYESDSSVAEALLDD--QSILFDDLVKICLQWFRRPP 181 Query: 186 KELGSGLVMQNAEGDGTRMTLSRLQVTGAW 215 K L + D + L +TG W Sbjct: 182 KALPPIAMGGTGISDPQPIVLRAPSITGVW 211 >ref|ZP_08530007.1| hypothetical protein AGRO_4015 [Agrobacterium sp. ATCC 31749] gb|EGL63305.1| hypothetical protein AGRO_4015 [Agrobacterium sp. ATCC 31749] Length = 202 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/210 (37%), Positives = 115/210 (54%), Gaps = 12/210 (5%) Query: 9 LIPLADYQRIFRVIHSVLDSVDANIPAASFFFSVTAAQILKKFYKKNAFPVAGAAFFLIS 68 LI DY RI+RVI+S+L S +A+ +AS +FS A IL++ YK A P G A + + Sbjct: 2 LIKQTDYFRIYRVINSLLISQNADPASASMYFSTFGAFILQQHYKVKAVPKGGLAAYNL- 60 Query: 69 KDGSGALSFGTLDGDK-VDSNSDAFHCWVQCDGYALDFMAPVFEELLEDAGHPMAVPRQM 127 G L F D V D FHCWV+ DG+A+DFMAP F E + +AVP +M Sbjct: 61 --GGTVLLFADHREDGYVTGAGDNFHCWVEADGWAIDFMAPAFSEGTD----ALAVPAKM 114 Query: 128 FQKDLARMAASPTALSALGDF--RLEPNLALTRELLQQFMNKPALSNLSQVCMDWYQKPP 185 FQ+ L+ MAAS L GDF R EP R + + + +++ V +W++K P Sbjct: 115 FQRPLSAMAASINDLGQSGDFFYRSEPEATARR--FADWHKQAMIGDMASVAANWFRKSP 172 Query: 186 KELGSGLVMQNAEGDGTRMTLSRLQVTGAW 215 K++ + L + + +G + L+ +TGAW Sbjct: 173 KQMAASLSVTDRDGKARTVPLTGEMLTGAW 202