BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0033.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776554.1| Mn2+/Zn2+ ABC transporter periplasmic protei... 435 e-120 ref|YP_981379.1| periplasmic solute-binding protein [Polaromonas... 356 3e-96 dbj|BAK53915.1| periplasmic solute binding protein [Chitiniphilu... 351 9e-95 emb|CBA33747.1| hypothetical protein Csp_B20600 [Curvibacter put... 348 8e-94 ref|YP_523307.1| periplasmic solute-binding protein [Rhodoferax ... 332 5e-89 >ref|YP_003776554.1| Mn2+/Zn2+ ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64646.1| ABC-type Mn2+/Zn2+ transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/291 (72%), Positives = 246/291 (84%), Gaps = 2/291 (0%) Query: 21 SAGDARLPVVASFSILGDIVANIGGDRITVTTLVGPDQDAHVFQPAPDHIKSVARARLVI 80 +A R+PV+ASFSILGD+VAN+GGDRI V+TLVGPD+DAHVFQPAPD IK+V+RARLV+ Sbjct: 22 AAAAERIPVLASFSILGDVVANVGGDRIAVSTLVGPDEDAHVFQPAPDDIKAVSRARLVV 81 Query: 81 VNGLGFEGWMDRVTQSANYRGDIVVASKGIAVRDRVEDEHDHDDHDGHEHHHG--KNDPH 138 VNGLGFEGWM+R+ QSANYRG IVVAS GI R+RV ++ D HD H K+DPH Sbjct: 82 VNGLGFEGWMERLAQSANYRGPIVVASAGIKARERVGEDEDEHGHDHAAAHEHHGKDDPH 141 Query: 139 AWQNPANVVIYTQNIVAALSKLDPSGAVLYRKNGDAYIAALTELDRWAMRQFAQFPPAKR 198 AWQ+P NVV+YT+NIV AL+KLDP+GA +YRKNGDAYIA L +LD WA RQFAQ P AKR Sbjct: 142 AWQDPQNVVVYTRNIVTALAKLDPAGAAVYRKNGDAYIAKLQDLDAWAARQFAQIPDAKR 201 Query: 199 KVITSHDAFEYFGAHYQVRFLAPQGVSTDSEPSAKEVANLIRQIRKEKIRAVFIENMSSP 258 KVITSHDAFEYFGA YQVRFLA QGVSTDSEPSA+E+A LIRQIR EKI+A+F ENMS+P Sbjct: 202 KVITSHDAFEYFGARYQVRFLAAQGVSTDSEPSAREIAALIRQIRTEKIKALFFENMSNP 261 Query: 259 KLLQQIGKEAGVTLGGKLYADALSQANGPAPTYLKLMRYNIEQLLAQMKLN 309 KLLQQI +EAG GGKLYADALS+A+GPAP YL LMRYNI QLL +++LN Sbjct: 262 KLLQQIAREAGTAPGGKLYADALSKADGPAPDYLSLMRYNITQLLEKIRLN 312 >ref|YP_981379.1| periplasmic solute-binding protein [Polaromonas naphthalenivorans CJ2] gb|ABM36458.1| periplasmic solute binding protein [Polaromonas naphthalenivorans CJ2] Length = 307 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 179/309 (57%), Positives = 229/309 (74%), Gaps = 5/309 (1%) Query: 2 KLFRQVFFS-IAAMLAVQGASAGDARLPVVASFSILGDIVANIGGDRITVTTLVGPDQDA 60 + F ++ S IA+ + GAS LPVVASFSILGD+V +GG+R++VTTLVGPD+DA Sbjct: 3 RAFCKLLLSGIASACLLPGASFAAEPLPVVASFSILGDLVRVVGGERVSVTTLVGPDEDA 62 Query: 61 HVFQPAPDHIKSVARARLVIVNGLGFEGWMDRVTQSANYRGDIVVASKGIAVRDRVEDEH 120 HVF+P P +++ ++RL++VNGLGFE W ++ +SA Y+G+ VVAS+G+ R ++ Sbjct: 63 HVFEPKPADARAIVQSRLLVVNGLGFEPWAQKLAKSAGYKGETVVASQGVKSRAMAAEK- 121 Query: 121 DHDDHDGHEHHHGKNDPHAWQNPANVVIYTQNIVAALSKLDPSGAVLYRKNGDAYIAALT 180 HD H H + DPHAWQNP NV +Y +NI AAL+K DP+GA LY+ N AY+ L Sbjct: 122 ---GHDEKGHQHEETDPHAWQNPDNVALYARNIAAALAKADPAGATLYQANASAYVKELQ 178 Query: 181 ELDRWAMRQFAQFPPAKRKVITSHDAFEYFGAHYQVRFLAPQGVSTDSEPSAKEVANLIR 240 LD WA QFA P A+RKVITSHDAF YF A YQV+FLAPQGVSTD+EPSAKEVA LIR Sbjct: 179 TLDAWAKAQFATLPAARRKVITSHDAFGYFAAQYQVKFLAPQGVSTDAEPSAKEVAQLIR 238 Query: 241 QIRKEKIRAVFIENMSSPKLLQQIGKEAGVTLGGKLYADALSQANGPAPTYLKLMRYNIE 300 QI++EKIRAVF+ENMS+PKLL Q+ K+AGV+ G LY DALS A GPA +YLKLMR+N+ Sbjct: 239 QIQREKIRAVFVENMSNPKLLAQLSKDAGVSAGPALYVDALSAAGGPADSYLKLMRHNVT 298 Query: 301 QLLAQMKLN 309 QL+ M+ N Sbjct: 299 QLVRGMQAN 307 >dbj|BAK53915.1| periplasmic solute binding protein [Chitiniphilus shinanonensis] Length = 307 Score = 351 bits (900), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 173/281 (61%), Positives = 220/281 (78%), Gaps = 1/281 (0%) Query: 26 RLPVVASFSILGDIVANIGGDRITVTTLVGPDQDAHVFQPAPDHIKSVARARLVIVNGLG 85 RLPVVASFSILGD+VA +GG+R++VTTLVGPDQDAHVFQP P ++VA ARL++VNGLG Sbjct: 25 RLPVVASFSILGDLVAQVGGERVSVTTLVGPDQDAHVFQPRPSDARTVAGARLLVVNGLG 84 Query: 86 FEGWMDRVTQSANYRGDIVVASKGIAVRDRVEDEHDHDDHDGHEHHHGKNDPHAWQNPAN 145 FEGW+DR+ S+ +RG VV S+GI R R+ +HD H+H HG DPHAWQ+P N Sbjct: 85 FEGWLDRLAASSGFRGTQVVLSQGIKPR-RMAHDHDDHAAHDHDHDHGGIDPHAWQDPRN 143 Query: 146 VVIYTQNIVAALSKLDPSGAVLYRKNGDAYIAALTELDRWAMRQFAQFPPAKRKVITSHD 205 VV+Y N+V ALS+ DP+GA +YR+NGD Y+A L ELDRWA QFA+ P +RKVITSHD Sbjct: 144 VVLYVNNLVRALSQADPAGAAVYRRNGDHYVAQLLELDRWAAAQFAKVPQPRRKVITSHD 203 Query: 206 AFEYFGAHYQVRFLAPQGVSTDSEPSAKEVANLIRQIRKEKIRAVFIENMSSPKLLQQIG 265 AF Y Y +RFLAPQGVST++EPSA++VA LIRQI+ E+I AVF+ENMS+P+ LQ +G Sbjct: 204 AFGYLAQRYDIRFLAPQGVSTEAEPSARDVAALIRQIKAERISAVFVENMSNPRTLQLLG 263 Query: 266 KEAGVTLGGKLYADALSQANGPAPTYLKLMRYNIEQLLAQM 306 EAGV G +LYADALS +GPA +YL++MRYN+ ++A + Sbjct: 264 SEAGVKPGPRLYADALSVRSGPAGSYLEMMRYNVRTIVAAL 304 >emb|CBA33747.1| hypothetical protein Csp_B20600 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 324 Score = 348 bits (892), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 164/284 (57%), Positives = 210/284 (73%), Gaps = 6/284 (2%) Query: 26 RLPVVASFSILGDIVANIGGDRITVTTLVGPDQDAHVFQPAPDHIKSVARARLVIVNGLG 85 +LPV ASFSILGD+V +GGDR+ VTTLVGP++DAHVF+ P K++ +RLV+ NGLG Sbjct: 47 KLPVTASFSILGDLVRVVGGDRVAVTTLVGPNEDAHVFEAKPADAKTLLASRLVVTNGLG 106 Query: 86 FEGWMDRVTQSANYRGDIVVASKGIAVRDRVEDEHDHDDHDGHEHHHGKNDPHAWQNPAN 145 FE W ++ +SA Y+G+ V A+KG+ R E++ H GH H + DPHAWQNP N Sbjct: 107 FEPWAAKLIKSAGYKGETVAATKGVKPRHMEEEK----GHAGHAHE--ETDPHAWQNPGN 160 Query: 146 VVIYTQNIVAALSKLDPSGAVLYRKNGDAYIAALTELDRWAMRQFAQFPPAKRKVITSHD 205 VV+Y +NI A LSK+D +GA Y+ N +AY+ L LD W Q P KRKVITSHD Sbjct: 161 VVLYVRNIAAGLSKVDAAGAATYQANAEAYVKELQALDSWTKEQIVSIPADKRKVITSHD 220 Query: 206 AFEYFGAHYQVRFLAPQGVSTDSEPSAKEVANLIRQIRKEKIRAVFIENMSSPKLLQQIG 265 AF YF A Y V+FLAPQGV+T++EPSAK+VA LI+QI++EKIRAVF+ENMS+PKL+ Q+ Sbjct: 221 AFGYFAAQYGVKFLAPQGVNTETEPSAKQVAQLIKQIQREKIRAVFVENMSTPKLIAQLS 280 Query: 266 KEAGVTLGGKLYADALSQANGPAPTYLKLMRYNIEQLLAQMKLN 309 K+AG TLG LYADALS A+ P TYLK+MR+N+ QL+A MKLN Sbjct: 281 KDAGATLGASLYADALSTADQPGATYLKMMRHNVTQLVAGMKLN 324 >ref|YP_523307.1| periplasmic solute-binding protein [Rhodoferax ferrireducens T118] gb|ABD69776.1| periplasmic solute binding protein [Rhodoferax ferrireducens T118] Length = 303 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 157/283 (55%), Positives = 207/283 (73%), Gaps = 9/283 (3%) Query: 27 LPVVASFSILGDIVANIGGDRITVTTLVGPDQDAHVFQPAPDHIKSVARARLVIVNGLGF 86 LPVVASFSILGD+V +GG+R+ VTTLVGPD DAH F+P P H K++ ++RL ++NGL + Sbjct: 30 LPVVASFSILGDLVQVVGGERVKVTTLVGPDADAHAFEPKPAHAKTILQSRLFVINGLNY 89 Query: 87 EGWMDRVTQSANYRGDIVVASKGIAVRDRVEDEHDHDDHDGHEHHHGKNDPHAWQNPANV 146 E W ++ +SANY+G+I+VAS+GI VR D+ +H H DPH WQ+P+NV Sbjct: 90 EPWAQKLARSANYKGEILVASQGIKVRKLPLDK---------DHQHADADPHGWQDPSNV 140 Query: 147 VIYTQNIVAALSKLDPSGAVLYRKNGDAYIAALTELDRWAMRQFAQFPPAKRKVITSHDA 206 V+Y +NI +L+ LDP+GA Y+KN + YI L LD++ Q A +R+VITSHDA Sbjct: 141 VVYVKNIAKSLASLDPAGASNYQKNSETYIKELEALDQFTKDQLAPLSIKQRQVITSHDA 200 Query: 207 FEYFGAHYQVRFLAPQGVSTDSEPSAKEVANLIRQIRKEKIRAVFIENMSSPKLLQQIGK 266 F YF A YQ+ FLAPQG++ D EPSAKEVA LIRQI+++KI+AVF+ENMS+PKLL QI + Sbjct: 201 FGYFAARYQIIFLAPQGINADVEPSAKEVAQLIRQIKRDKIKAVFVENMSNPKLLAQITQ 260 Query: 267 EAGVTLGGKLYADALSQANGPAPTYLKLMRYNIEQLLAQMKLN 309 + GVTLG KLY DALS N P TYLK+M +N+ QL+A M+ N Sbjct: 261 DTGVTLGPKLYVDALSGPNEPGSTYLKMMHHNVTQLVAGMQRN 303