BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0031.p (310 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776552.1| LysR family transcription regulator protein ... 453 e-125 ref|YP_004754163.1| LysR family transcriptional regulator [Colli... 352 4e-95 ref|ZP_06688054.1| LysR family transcriptional regulator [Achrom... 238 6e-61 ref|YP_003979429.1| LysR family transcriptional regulator [Achro... 236 2e-60 gb|EGP43884.1| LysR family regulatory helix-turn-helix protein 1... 231 1e-58 >ref|YP_003776552.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64644.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 224/307 (72%), Positives = 261/307 (85%) Query: 1 MSLSLPPLKALKVFEAAVRTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGV 60 M SLPPLKALKVFEAAVRTRSLT+AAHEL ITHSAVSQQIK LEE+F QPLF+R RGV Sbjct: 1 MPSSLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGV 60 Query: 61 EATEAAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRVITAPSVAMRWLIPRLSQFQIDN 120 E TEAA +FY EV+A+LDRIA+AAEQL L GK+R+VR+I APSVAMRWLIPRLSQFQIDN Sbjct: 61 EPTEAALSFYAEVKASLDRIALAAEQLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDN 120 Query: 121 PRIEVRVTTTVSEHFEDLKAPFDVVLWRSPLERSGFECVRFLDDVSAPLASPHYLELHSI 180 PRIEVRVTTT+SE+FED+K PFDV++WRSPLERSG+EC+RFLDDVS PLASPH+LE H I Sbjct: 121 PRIEVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYECMRFLDDVSVPLASPHFLETHPI 180 Query: 181 TKPADLLQASLIHLSVRAEAWQQWLIKAGVPVKKKLPGTSYEHFFLSLQAASTDLGIAMG 240 P D ++ LIHLS R+ AW QWL KAGV V++K+PGT YEH FLSLQAA+TD G+ MG Sbjct: 181 RVPRDFVEVPLIHLSSRSAAWSQWLSKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMG 240 Query: 241 SLALVDDDLSHGRLRQLFPEVVLHGQGFHMLHRTGETNGNALKTFIAWLMQMGVASAYDP 300 +LALVDDDL+ GRL +LFPE+VLHG+G+HML R+G ALKTFI WL QMG AS++DP Sbjct: 241 TLALVDDDLAAGRLVRLFPEIVLHGEGYHMLCRSGAETNPALKTFITWLKQMGQASSFDP 300 Query: 301 DKRYSAD 307 + + AD Sbjct: 301 QRTWPAD 307 >ref|YP_004754163.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63340.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 303 Score = 352 bits (903), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 179/293 (61%), Positives = 225/293 (76%), Gaps = 2/293 (0%) Query: 1 MSLSLPPLKALKVFEAAVRTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGV 60 M LPPLK L+VFEA VRT SLT+AA ELH+THSAVSQQIKLLE+HF Q LF+R RGV Sbjct: 1 MKTRLPPLKPLRVFEAVVRTGSLTLAAAELHLTHSAVSQQIKLLEQHFDQTLFVRGQRGV 60 Query: 61 EATEAAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRVITAPSVAMRWLIPRLSQFQIDN 120 E T AA+ F+ +V+A LDRI++AAEQL TGK RI+RV PS+AMRWLIPRLS FQI+N Sbjct: 61 EPTAAARIFFADVKAGLDRISLAAEQLLNTGKVRIIRVSCTPSMAMRWLIPRLSSFQIEN 120 Query: 121 PRIEVRVTTTVSEHFEDLKAPFDVVLWRSPLERSGFECVRFLDDVSAPLASPHYLELHSI 180 PR+E+RVTT+ + LK PFDV++ RSP+ R+ +EC+RFLDDV P+ASP YL+ H Sbjct: 121 PRVEIRVTTSTVA-VDALKEPFDVLIRRSPMHRAEYECIRFLDDVLTPVASPRYLQQHPC 179 Query: 181 TKPADLLQASLIHLSVRAEAWQQWLIKAGVPVKKKLPGTSYEHFFLSLQAASTDLGIAMG 240 PADLLQASL+HLS R+E+W +W + GVPVK +L G YEHFFLSLQAA TDLG+A+G Sbjct: 180 KTPADLLQASLLHLSTRSESWTRWFSEVGVPVKGQLSGQIYEHFFLSLQAALTDLGVALG 239 Query: 241 SLALVDDDLSHGRLRQLFPEVVLHGQGFHMLHRTGETNGNALKTFIAWLMQMG 293 SLA++++DL+HG L LFP+++L +GFH+L+R + L FIAWL G Sbjct: 240 SLAMIEEDLAHGSLLPLFPDLLLRDKGFHLLYRPSHQDPQ-LANFIAWLQLKG 291 >ref|ZP_06688054.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF75017.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 302 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 126/288 (43%), Positives = 173/288 (60%), Gaps = 1/288 (0%) Query: 4 SLPPLKALKVFEAAVRTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGVEAT 63 SLPPLKAL+VFEAA R RS T AA EL ITHSAVSQQI++LE++ GQPLF R RGV Sbjct: 5 SLPPLKALRVFEAAARLRSFTAAADELSITHSAVSQQIRVLEDYLGQPLFAREARGVALL 64 Query: 64 EAAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRVITAPSVAMRWLIPRLSQFQIDNPRI 123 AQA++ EV+ +L+RI+ A +L ++RV PS+ M+WLIPRL+ FQ NP + Sbjct: 65 PGAQAYFAEVQGSLERISTATAKLKAPSAGGVLRVCATPSLTMKWLIPRLATFQAANPGV 124 Query: 124 EVRVTTTVSEHFEDLKAP-FDVVLWRSPLERSGFECVRFLDDVSAPLASPHYLELHSITK 182 +V+++T + P DV++ + S CV LDD P+ASP ++E + + Sbjct: 125 DVQLSTQARPFLDRGGDPGSDVLIRHGFMAHSDLACVHCLDDFHIPVASPRFIERNRLYA 184 Query: 183 PADLLQASLIHLSVRAEAWQQWLIKAGVPVKKKLPGTSYEHFFLSLQAASTDLGIAMGSL 242 PAD L L+ +S + W +W A V V +LPG ++H FL +QAA DLGIA+ Sbjct: 185 PADCLAHPLLKISGGMDHWPRWFALAKVDVPPQLPGPVFDHQFLCMQAAMNDLGIALAPW 244 Query: 243 ALVDDDLSHGRLRQLFPEVVLHGQGFHMLHRTGETNGNALKTFIAWLM 290 L++DD+ RLR LF + L G H L+R + + FIAWL Sbjct: 245 CLLEDDIRADRLRPLFAQPQLPNAGIHALYRQDGPAAASAQLFIAWLC 292 >ref|YP_003979429.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP16714.1| bacterial regulatory helix-turn-helix protein, LysR family protein 104 [Achromobacter xylosoxidans A8] Length = 302 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 129/292 (44%), Positives = 174/292 (59%), Gaps = 3/292 (1%) Query: 4 SLPPLKALKVFEAAVRTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGVEAT 63 SLPPLKAL+VFEAA R RS T AA EL ITHSAVSQQI++LEE+ GQPLF R RGV Sbjct: 5 SLPPLKALRVFEAAARLRSFTAAADELSITHSAVSQQIRILEEYVGQPLFAREARGVALL 64 Query: 64 EAAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRVITAPSVAMRWLIPRLSQFQIDNPRI 123 AQA++ E++A+L+RIA A +L ++RV PS+ M+WLIPRLS FQ +P + Sbjct: 65 PCAQAYFPEIQASLERIAAATAKLKSPAYGGVLRVCATPSLTMKWLIPRLSAFQARHPGV 124 Query: 124 EVRVTTTVSEHFEDLKAPF--DVVLWRSPLERSGFECVRFLDDVSAPLASPHYLELHSIT 181 +V++TT F D DV++ + S CV LDD P+ASP ++E + + Sbjct: 125 DVQLTTQ-GRSFLDRGGDTGSDVLIRHGYMAHSDLACVHCLDDFHVPVASPRFIERNRLA 183 Query: 182 KPADLLQASLIHLSVRAEAWQQWLIKAGVPVKKKLPGTSYEHFFLSLQAASTDLGIAMGS 241 PAD L L+ ++ + W +W A V V +LPG ++H FL +QAA DLGIA+ Sbjct: 184 APADCLGHPLLKIAGGMDHWPRWFALAKVDVPAQLPGPVFDHQFLCMQAAMNDLGIALAP 243 Query: 242 LALVDDDLSHGRLRQLFPEVVLHGQGFHMLHRTGETNGNALKTFIAWLMQMG 293 L++DD+ RLR LF L G H L+R + + FI WL + G Sbjct: 244 WCLLEDDIRADRLRPLFDGPQLPNAGIHALYRQDGPAAASAQLFIEWLREQG 295 >gb|EGP43884.1| LysR family regulatory helix-turn-helix protein 104 [Achromobacter xylosoxidans AXX-A] Length = 302 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 132/288 (45%), Positives = 174/288 (60%), Gaps = 3/288 (1%) Query: 4 SLPPLKALKVFEAAVRTRSLTIAAHELHITHSAVSQQIKLLEEHFGQPLFIRLPRGVEAT 63 SLPPLKAL+VFEAA R RS T AA EL ITHSAVSQQI++LE++ GQPLF R RGV Sbjct: 5 SLPPLKALRVFEAAARLRSFTAAADELSITHSAVSQQIRILEDYVGQPLFAREARGVTLL 64 Query: 64 EAAQAFYTEVRAALDRIAMAAEQLTLTGKNRIVRVITAPSVAMRWLIPRLSQFQIDNPRI 123 AQA++ EV+A+L+RIA A +L G ++RV PS+ M+WLIPRLS FQ +P I Sbjct: 65 PCAQAYFPEVQASLERIAAATAKLRSPGYGGVLRVSATPSLTMKWLIPRLSAFQALHPGI 124 Query: 124 EVRVTTTVSEHFEDL--KAPFDVVLWRSPLERSGFECVRFLDDVSAPLASPHYLELHSIT 181 +V++TT F D +A DV++ + + CV LDD P+ASP ++E + + Sbjct: 125 DVQLTTQ-GRSFLDRGDEAGSDVLIRHGFVAHAEMSCVHCLDDFHVPVASPRFIERNRLA 183 Query: 182 KPADLLQASLIHLSVRAEAWQQWLIKAGVPVKKKLPGTSYEHFFLSLQAASTDLGIAMGS 241 PAD L L+ ++ + W +W A V V +LPG ++H FL +QAA DLGIA+ Sbjct: 184 TPADCLGHPLLKVAGGMDHWPRWFALAKVDVPAQLPGPVFDHQFLCMQAAMNDLGIALAP 243 Query: 242 LALVDDDLSHGRLRQLFPEVVLHGQGFHMLHRTGETNGNALKTFIAWL 289 L+ DDL RLR LF + L G H L R A + FI WL Sbjct: 244 WCLLQDDLRADRLRPLFLQPRLPNAGVHALFRPDAPAAAAARHFIDWL 291