BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0025.p         (114 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004753419.1| Rrf2 family transcriptional regulator, group...   190   6e-47
ref|ZP_02737651.1| possible transcriptional regulator, Rrf2 fami...    97   1e-18
ref|ZP_06972581.1| transcriptional regulator, BadM/Rrf2 family [...    88   4e-16
ref|YP_423381.1| transcriptional regulator [Magnetospirillum mag...    82   2e-14
ref|ZP_07751234.1| transcriptional regulator, BadM/Rrf2 family [...    82   2e-14

>ref|YP_004753419.1| Rrf2 family transcriptional regulator, group III [Collimonas
           fungivorans Ter331]
 gb|AEK62596.1| Rrf2 family transcriptional regulator, group III [Collimonas
           fungivorans Ter331]
          Length = 144

 Score =  190 bits (483), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 101/114 (88%)

Query: 1   LSSAAIATSVNTNPVFVRELLRKLSKAHLVVTKEGKGGGAQLARPASQINLAEIYQAVEE 60
           L S AIATSVNTNPVFVRELLRKLSKA LV+TKEGKGGG QLARPAS INLAEIYQAVEE
Sbjct: 27  LPSTAIATSVNTNPVFVRELLRKLSKAKLVLTKEGKGGGVQLARPASDINLAEIYQAVEE 86

Query: 61  EPVLKHNTRPKDPCCRVSCGMDMALDPVISEVEGAMLKVLKGRKLSELVSTICD 114
            PVLKHNTR KD CC VSCGMDM LDPV+SEVEGA+L++L+ RKLSELV+ I D
Sbjct: 87  GPVLKHNTRSKDLCCPVSCGMDMVLDPVVSEVEGALLEILRERKLSELVNKIAD 140


>ref|ZP_02737651.1| possible transcriptional regulator, Rrf2 family protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 140

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 71/109 (65%)

Query: 1   LSSAAIATSVNTNPVFVRELLRKLSKAHLVVTKEGKGGGAQLARPASQINLAEIYQAVEE 60
           L+S  IA SVNTNPV +R +L  L++A LV T+EG GGG +LA+PA++I L  +Y+AVE 
Sbjct: 24  LTSEYIAGSVNTNPVVIRRILAVLARAGLVATQEGTGGGGRLAKPAAEITLRAVYEAVEP 83

Query: 61  EPVLKHNTRPKDPCCRVSCGMDMALDPVISEVEGAMLKVLKGRKLSELV 109
           + +   + R  +P C V  G+  AL+P +   E A+L  L G  +++LV
Sbjct: 84  DALFALHPRDPNPLCPVGGGIQSALEPTLRAAETALLGSLAGTSVADLV 132


>ref|ZP_06972581.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
 gb|EFH85301.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
          Length = 164

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 60/96 (62%)

Query: 1   LSSAAIATSVNTNPVFVRELLRKLSKAHLVVTKEGKGGGAQLARPASQINLAEIYQAVEE 60
           ++S  IA SVNTNPVF+R +L +L KAHLV    G   G  LA+P  +I+L E+YQAVE+
Sbjct: 27  MTSDQIAGSVNTNPVFIRRILGRLHKAHLVNVHHGTSAGWTLAQPPEKISLLEVYQAVEQ 86

Query: 61  EPVLKHNTRPKDPCCRVSCGMDMALDPVISEVEGAM 96
           EP+ + +  P +  C V  G+  AL    S+ E AM
Sbjct: 87  EPLFELHHTPPNQGCVVGKGIQPALKRFYSDAEAAM 122


>ref|YP_423381.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 dbj|BAE52822.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 121

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 69/113 (61%), Gaps = 4/113 (3%)

Query: 2   SSAAIATSVNTNPVFVRELLRKLSKAHLVVTKEGKGGGAQLARPASQINLAEIYQAV--E 59
           +S  IA SVNTNPV VR LL  L+KA LV +  G  GG+ LARPA +I+L +I++AV  E
Sbjct: 7   TSEWIAGSVNTNPVVVRRLLSALAKAGLVSSTRGSAGGSVLARPADRISLLDIHRAVDEE 66

Query: 60  EEPVLKHNTRPKDPCCRVSCGMDMALDPVISEVEGAMLKVLKGRKLSELVSTI 112
           EEP L HN +P +P C V   +   L  V+   + A   VL   KLSE+V  +
Sbjct: 67  EEPAL-HN-QPPNPACPVGRNIQSVLVRVMERADAARDAVLSTTKLSEVVGAL 117


>ref|ZP_07751234.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
           paludis DSM 18603]
 gb|EFQ72968.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
           paludis DSM 18603]
          Length = 136

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 69/113 (61%)

Query: 1   LSSAAIATSVNTNPVFVRELLRKLSKAHLVVTKEGKGGGAQLARPASQINLAEIYQAVEE 60
           ++S  +A S+N NPV VR+ L  L K +LV +KEGK GGA L +PA++I L+++Y+AV++
Sbjct: 24  VTSDYLAGSININPVLVRKELINLRKHNLVGSKEGKNGGAYLLKPATEIRLSDVYEAVKQ 83

Query: 61  EPVLKHNTRPKDPCCRVSCGMDMALDPVISEVEGAMLKVLKGRKLSELVSTIC 113
            P+L       +P C V   ++  LD + ++ E A++K L    L + V+   
Sbjct: 84  SPLLGQAKNTPNPACPVGRQINQHLDSLHADAERALVKQLNTTTLQQFVNLFA 136