BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0020.p (149 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774593.1| biopolymer transport ExbD-related transmembr... 226 1e-57 ref|YP_004751874.1| biopolymer transport protein ExbD/TolR [Coll... 215 1e-54 ref|ZP_08275301.1| Biopolymer transport protein ExbD/TolR [Oxalo... 202 1e-50 ref|YP_001354270.1| biopolymer transport protein ExbD [Janthinob... 187 5e-46 ref|YP_001100740.1| putative iopolymer transport ExbD2 protein [... 186 1e-45 >ref|YP_003774593.1| biopolymer transport ExbD-related transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62685.1| biopolymer transport ExbD-related transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 142 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 112/149 (75%), Positives = 126/149 (84%), Gaps = 7/149 (4%) Query: 1 MNFRKGRAREELEINLIPFIDVLLVIVIFLMVTTTYSKFTALQITLPTANAEKALEQPFE 60 MNFRKGR RE+LEINLIPFIDVLLVIVIFLMVTTTYSKFTALQ+TLPTA+A KALEQPFE Sbjct: 1 MNFRKGRPREDLEINLIPFIDVLLVIVIFLMVTTTYSKFTALQLTLPTADAPKALEQPFE 60 Query: 61 LNVAVDAQGRYAINNVQIAARDAAGLARELQSAVQANSANTDTSGGKPDPVVIINADALA 120 LN+AVDA GRYA+NN +I+ARDA GL+ E+Q+ V+A S K DPV+IINADALA Sbjct: 61 LNIAVDANGRYALNNKRISARDAQGLSEEMQAVVRA-------SASKLDPVIIINADALA 113 Query: 121 AHQTVINVLEAARTAGFAKVTFAAQTGGK 149 HQTV+NVLEAAR AG+ KVTFAAQ K Sbjct: 114 THQTVVNVLEAARMAGYPKVTFAAQASSK 142 >ref|YP_004751874.1| biopolymer transport protein ExbD/TolR [Collimonas fungivorans Ter331] gb|AEK61051.1| Biopolymer transport protein ExbD/TolR [Collimonas fungivorans Ter331] Length = 143 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 107/148 (72%), Positives = 127/148 (85%), Gaps = 7/148 (4%) Query: 1 MNFRKGRAREELEINLIPFIDVLLVIVIFLMVTTTYSKFTALQITLPTANAEKALEQPFE 60 MNFRKG+ R++ EINLIPFIDVLLVIVIFLMVTT+YSKFTALQITLPTA+A+KA+ QP E Sbjct: 1 MNFRKGKGRDDPEINLIPFIDVLLVIVIFLMVTTSYSKFTALQITLPTADADKAMVQPQE 60 Query: 61 LNVAVDAQGRYAINNVQIAARDAAGLARELQSAVQANSANTDTSGGKPDPVVIINADALA 120 +NVAV QG+YA+NNVQ++++DAA LA +L++AVQA+ G K DPVVIINADA+A Sbjct: 61 INVAVSPQGQYAVNNVQVSSKDAASLALDLKNAVQAD-------GAKGDPVVIINADAMA 113 Query: 121 AHQTVINVLEAARTAGFAKVTFAAQTGG 148 HQTVINVLEAAR AGF K+TFAAQT G Sbjct: 114 THQTVINVLEAARLAGFDKITFAAQTSG 141 >ref|ZP_08275301.1| Biopolymer transport protein ExbD/TolR [Oxalobacteraceae bacterium IMCC9480] gb|EGF31230.1| Biopolymer transport protein ExbD/TolR [Oxalobacteraceae bacterium IMCC9480] Length = 145 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/146 (67%), Positives = 121/146 (82%), Gaps = 5/146 (3%) Query: 1 MNFRKGRAREELEINLIPFIDVLLVIVIFLMVTTTYSKFTALQITLPTANAEKALEQPFE 60 MNFR+ + RE+ EINLIPFIDVLLVI+IFLMV+TTYSKFT LQITLPTA+AEKA+E+PFE Sbjct: 1 MNFRRRKGREDPEINLIPFIDVLLVILIFLMVSTTYSKFTELQITLPTADAEKAVERPFE 60 Query: 61 LNVAVDAQGRYAINNVQIAARDAAGLARELQSAVQANSANTDTSGGKPDPVVIINADALA 120 +NV VD+QGRYA+NNVQ++ RD GLA E++ N+A+ S + DP+VIINAD A Sbjct: 61 INVMVDSQGRYAVNNVQVSFRDVRGLADEMR-----NAASGKGSELRKDPIVIINADGTA 115 Query: 121 AHQTVINVLEAARTAGFAKVTFAAQT 146 HQ+VINVLEAAR AGF +VTFAAQ+ Sbjct: 116 THQSVINVLEAARLAGFERVTFAAQS 141 >ref|YP_001354270.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille] gb|ABR90384.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille] Length = 144 Score = 187 bits (475), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 99/149 (66%), Positives = 117/149 (78%), Gaps = 6/149 (4%) Query: 1 MNFRKGRAREELEINLIPFIDVLLVIVIFLMVTTTYSKFTALQITLPTANAEKALEQPFE 60 MNFRKG+ RE+ EINLI FIDVLLVI+IFLMV+T+YSKFTALQITLPTA+AEKA+++PFE Sbjct: 1 MNFRKGQGREDPEINLIAFIDVLLVILIFLMVSTSYSKFTALQITLPTADAEKAMDRPFE 60 Query: 61 LNVAVDAQGRYAINNVQIAARDAAGLARELQSAVQANSANTDTSGGKPDPVVIINADALA 120 +NV VD QGRY+INN +IA ++ +A A S T+T DPV+II ADA A Sbjct: 61 INVGVDTQGRYSINNTRIAVQNPE-ALAAELTAAVAASGKTNT-----DPVIIIAADATA 114 Query: 121 AHQTVINVLEAARTAGFAKVTFAAQTGGK 149 HQTVINVLEAAR AG+ KVTFAAQT GK Sbjct: 115 THQTVINVLEAARIAGYPKVTFAAQTSGK 143 >ref|YP_001100740.1| putative iopolymer transport ExbD2 protein [Herminiimonas arsenicoxydans] emb|CAL62619.1| Biopolymer transport protein [Herminiimonas arsenicoxydans] Length = 144 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/150 (66%), Positives = 118/150 (78%), Gaps = 8/150 (5%) Query: 1 MNFRKGRAREELEINLIPFIDVLLVIVIFLMVTTTYSKFTALQITLPTANAEKALEQPFE 60 MNFRKG+ RE+ EINLI FIDVLLVI+IFLMV+T+YSKFTALQITLPTA+AEKA+E+PFE Sbjct: 1 MNFRKGQGREDPEINLIAFIDVLLVILIFLMVSTSYSKFTALQITLPTADAEKAMERPFE 60 Query: 61 LNVAVDAQGRYAINNVQIAARD-AAGLARELQSAVQANSANTDTSGGKPDPVVIINADAL 119 +NV VDAQGRYAINN ++A ++ A +A + AN DPVVII A+A Sbjct: 61 INVIVDAQGRYAINNTRVAVQNPEALAEELTAAATASGKANV-------DPVVIIAAEAT 113 Query: 120 AAHQTVINVLEAARTAGFAKVTFAAQTGGK 149 A HQ+VINVLEAAR AG++KVTFAAQ GGK Sbjct: 114 ATHQSVINVLEAARIAGYSKVTFAAQAGGK 143