BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0007.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754058.1| LysR family transcriptional regulator [Colli... 479 e-133 ref|YP_003047856.1| LysR family transcriptional regulator [Methy... 432 e-119 ref|YP_003673820.1| LysR family transcriptional regulator [Methy... 418 e-115 ref|YP_004040995.1| LysR family transcriptional regulator [Methy... 376 e-102 ref|YP_003052443.1| LysR family transcriptional regulator [Methy... 376 e-102 >ref|YP_004754058.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63235.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 307 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 243/303 (80%), Positives = 275/303 (90%) Query: 1 MFRISLDALLILDAIDRRGSFSAAGLELHRVPSTISYTVSKLEQDLGVQVFDRQGPKVVL 60 MFRISLDALLILDAIDRRGSFSAAG ELHRVPSTISYTVSKLEQDLGVQV++RQGPKV L Sbjct: 1 MFRISLDALLILDAIDRRGSFSAAGSELHRVPSTISYTVSKLEQDLGVQVYERQGPKVAL 60 Query: 61 TRAGEELLKEGRYLLKAAEDLEHRVRRVASGWETEFTIGLDSLYSAASLESDIVAFYQVA 120 TRAG ELLKEGRYLLKAAEDLEHRVRRVASGWETE T+ +DSL+S A+LESDI AF VA Sbjct: 61 TRAGAELLKEGRYLLKAAEDLEHRVRRVASGWETELTVCIDSLFSVAALESDISAFCSVA 120 Query: 121 DRTRLRIARESLAGTWEALLDRRVDLLIAAPGEGPAGGGYVAEQIGTVKFVFVVAPHHPL 180 D+TRLR+ARESLAGTWEALL+RRVDLLIAAPG+GPAGGGY+AEQ+GT+ FVFVVAP HPL Sbjct: 121 DKTRLRVARESLAGTWEALLERRVDLLIAAPGQGPAGGGYIAEQMGTISFVFVVAPTHPL 180 Query: 181 AKMDKVLSKADLHPYRAISVADSARKMPPRTVGLLFGQDTLTVPDMRSKYALQLAGVGFG 240 AK+ +VL KA+L P+RAISVADSARKM RTVGLLFGQDTLTVPDMRSKY LQLAG+GFG Sbjct: 181 AKVKRVLGKAELLPHRAISVADSARKMASRTVGLLFGQDTLTVPDMRSKYDLQLAGIGFG 240 Query: 241 FLPEPCVRKSIASGALVVKEVEQPRAEETFSLAWRVGEDGAALTWWLKRMRETDILNRML 300 FLPEPC +IASGAL+VKEVE+P+ +E FSLAWR G+DGAAL+WW+ RMR++D + R++ Sbjct: 241 FLPEPCASAAIASGALIVKEVEEPKPDEIFSLAWRTGDDGAALSWWMARMRDSDAMARLI 300 Query: 301 SQI 303 + Sbjct: 301 RHV 303 >ref|YP_003047856.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8] gb|ACT47329.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8] Length = 308 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/299 (68%), Positives = 251/299 (83%) Query: 1 MFRISLDALLILDAIDRRGSFSAAGLELHRVPSTISYTVSKLEQDLGVQVFDRQGPKVVL 60 MFRISLD+LLILDAIDR GSF+AAG ELH+VPSTISYTVSKLEQDLGVQVF+RQGPKV L Sbjct: 1 MFRISLDSLLILDAIDRGGSFAAAGNELHKVPSTISYTVSKLEQDLGVQVFERQGPKVSL 60 Query: 61 TRAGEELLKEGRYLLKAAEDLEHRVRRVASGWETEFTIGLDSLYSAASLESDIVAFYQVA 120 T AG+ELLKEGRYLLKAAEDLEHRVRRVASGWETE +IG+DS++S +L D+ FY+VA Sbjct: 61 TSAGKELLKEGRYLLKAAEDLEHRVRRVASGWETELSIGMDSVFSPTALVEDVAEFYKVA 120 Query: 121 DRTRLRIARESLAGTWEALLDRRVDLLIAAPGEGPAGGGYVAEQIGTVKFVFVVAPHHPL 180 + TRLR A+E+L+G+WEAL+DRRVDLLI A GEGP+GGGY AE I T++FVF VAP+HPL Sbjct: 121 NLTRLRFAQEALSGSWEALMDRRVDLLIGAAGEGPSGGGYHAEVIDTIQFVFAVAPNHPL 180 Query: 181 AKMDKVLSKADLHPYRAISVADSARKMPPRTVGLLFGQDTLTVPDMRSKYALQLAGVGFG 240 A +++ L KA+L+ +RAI+V+DS RKMPPRTVGLLFGQ+TL VP+MR+KY QLAG+GFG Sbjct: 181 ASLNQPLGKAELYQHRAITVSDSVRKMPPRTVGLLFGQETLAVPNMRTKYEFQLAGLGFG 240 Query: 241 FLPEPCVRKSIASGALVVKEVEQPRAEETFSLAWRVGEDGAALTWWLKRMRETDILNRM 299 FLPEP R +IA G LV K+VE+ R E+ +AWR G+ GA L WW+ R+R + ++ Sbjct: 241 FLPEPLARDAIAKGLLVEKQVEETRQPESIYMAWRSGDTGAGLKWWIDRVRSQHMAEKL 299 >ref|YP_003673820.1| LysR family transcriptional regulator [Methylotenera versatilis 301] gb|ADI29243.1| transcriptional regulator, LysR family [Methylotenera versatilis 301] Length = 304 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/299 (68%), Positives = 245/299 (81%) Query: 1 MFRISLDALLILDAIDRRGSFSAAGLELHRVPSTISYTVSKLEQDLGVQVFDRQGPKVVL 60 MFRISLDALLILDAIDR GSF+AAG EL++VPSTISYTVSKLEQDLGVQVF+R GPKV + Sbjct: 1 MFRISLDALLILDAIDRLGSFAAAGNELYKVPSTISYTVSKLEQDLGVQVFERLGPKVAI 60 Query: 61 TRAGEELLKEGRYLLKAAEDLEHRVRRVASGWETEFTIGLDSLYSAASLESDIVAFYQVA 120 T+AG ELLKEGR+LLKAA DLEHRVRRVASGWETE TIG+DS++S SL D+ F +VA Sbjct: 61 TKAGSELLKEGRHLLKAASDLEHRVRRVASGWETELTIGMDSVFSPTSLIHDVTEFCKVA 120 Query: 121 DRTRLRIARESLAGTWEALLDRRVDLLIAAPGEGPAGGGYVAEQIGTVKFVFVVAPHHPL 180 D TRL+ ++E+L+GTWEALLDRRVDLL+ A GEGP+GGGY + IG + FVF V+P+HPL Sbjct: 121 DLTRLKFSQETLSGTWEALLDRRVDLLVGAAGEGPSGGGYHSHLIGYMDFVFAVSPNHPL 180 Query: 181 AKMDKVLSKADLHPYRAISVADSARKMPPRTVGLLFGQDTLTVPDMRSKYALQLAGVGFG 240 A + LSKADL + AI+V+DS RKM PRTVGLLFGQ+TL V +MR+KY QLAG+GFG Sbjct: 181 AGIASPLSKADLSQHLAITVSDSVRKMQPRTVGLLFGQNTLAVSNMRAKYEYQLAGMGFG 240 Query: 241 FLPEPCVRKSIASGALVVKEVEQPRAEETFSLAWRVGEDGAALTWWLKRMRETDILNRM 299 FLPE R++IASG LV+KEVE+PR E LAWR E GA LTWW+ +M+ ++L R+ Sbjct: 241 FLPEAIARQAIASGLLVIKEVEEPRKPEPVYLAWRTEEVGAGLTWWIDKMKSPNLLERL 299 >ref|YP_004040995.1| LysR family transcriptional regulator [Methylovorus sp. MP688] gb|ADQ85759.1| transcriptional regulator, LysR family [Methylovorus sp. MP688] Length = 314 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/300 (60%), Positives = 234/300 (78%), Gaps = 2/300 (0%) Query: 1 MFRISLDALLILDAIDRRGSFSAAGLELHRVPSTISYTVSKLEQDLGVQVFDRQGPKVVL 60 MFRISLDALL+LDA+DR GSF+AAG L +VPSTISYT+SKLEQDLGVQ+++RQGPKV L Sbjct: 1 MFRISLDALLVLDAVDRLGSFAAAGGALFKVPSTISYTISKLEQDLGVQIYERQGPKVTL 60 Query: 61 TRAGEELLKEGRYLLKAAEDLEHRVRRVASGWETEFTIGLDSLYSAASLESDIVAFYQVA 120 T+ G ELL EGR+L++AAE+LE RV+RVASGWETE IG+D+++S +L DI AF +A Sbjct: 61 TKVGLELLTEGRHLIRAAEELEQRVKRVASGWETELNIGMDTMFSTRTLIPDITAFCAIA 120 Query: 121 DRTRLRIARESLAGTWEALLDRRVDLLIAAPGEGPAGGGYVAEQIGTVKFVFVVAPHHPL 180 TR+++ +ESL+GTWE+LL+ RVD+LI A GEGP+GGGY E +G +FVF VAP HPL Sbjct: 121 G-TRIKLVQESLSGTWESLLEGRVDILIGAAGEGPSGGGYAREVLGMTEFVFCVAPSHPL 179 Query: 181 AKMDKVLSKADLHPYRAISVADSARKMPPRTVGLLFGQDTLTVPDMRSKYALQLAGVGFG 240 A +DK L K DL PYRA+ V+DS R++ PRTVGLL GQDTL+VP M++K Q+AG+GFG Sbjct: 180 AAIDKPLGKNDLAPYRAVVVSDSVRRLAPRTVGLLLGQDTLSVPTMQAKLDYQVAGLGFG 239 Query: 241 FLPEPCVRKSIASGALVVKEVEQPRAEETFSLAWRVGEDGAALTWWLKRMRET-DILNRM 299 FLP P + ++ G LV ++V++PR E LAWR E G L WW+ RM+E+ DI+ R+ Sbjct: 240 FLPLPLAQPALDQGLLVARQVQEPRPPEPVCLAWRTAEAGEGLKWWIARMKESPDIVARL 299 >ref|YP_003052443.1| LysR family transcriptional regulator [Methylovorus glucosetrophus SIP3-4] gb|ACT51916.1| transcriptional regulator, LysR family [Methylovorus glucosetrophus SIP3-4] Length = 314 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/300 (60%), Positives = 234/300 (78%), Gaps = 2/300 (0%) Query: 1 MFRISLDALLILDAIDRRGSFSAAGLELHRVPSTISYTVSKLEQDLGVQVFDRQGPKVVL 60 MFRISLDALL+LDA+DR GSF+AAG L +VPSTISYT+SKLEQDLGVQ+++RQGPKV L Sbjct: 1 MFRISLDALLVLDAVDRLGSFAAAGGALFKVPSTISYTISKLEQDLGVQIYERQGPKVTL 60 Query: 61 TRAGEELLKEGRYLLKAAEDLEHRVRRVASGWETEFTIGLDSLYSAASLESDIVAFYQVA 120 T+ G ELL EGR+L++AAE+LE RV+RVASGWETE IG+D+++S +L DI AF +A Sbjct: 61 TKVGLELLTEGRHLIRAAEELEQRVKRVASGWETELNIGMDTMFSTRTLIPDITAFCAIA 120 Query: 121 DRTRLRIARESLAGTWEALLDRRVDLLIAAPGEGPAGGGYVAEQIGTVKFVFVVAPHHPL 180 TR+++ +ESL+GTWE+LL+ RVD+LI A GEGP+GGGY E +G +FVF VAP HPL Sbjct: 121 G-TRIKLVQESLSGTWESLLEGRVDILIGAAGEGPSGGGYAREVLGMTEFVFCVAPAHPL 179 Query: 181 AKMDKVLSKADLHPYRAISVADSARKMPPRTVGLLFGQDTLTVPDMRSKYALQLAGVGFG 240 A +DK L K DL PYRA+ V+DS R++ PRTVGLL GQDTL+VP M++K Q+AG+GFG Sbjct: 180 AAIDKPLGKNDLAPYRAVVVSDSVRRLAPRTVGLLLGQDTLSVPTMQAKLDYQVAGLGFG 239 Query: 241 FLPEPCVRKSIASGALVVKEVEQPRAEETFSLAWRVGEDGAALTWWLKRMRET-DILNRM 299 FLP P + ++ G LV ++V++PR E LAWR E G L WW+ RM+E+ DI+ R+ Sbjct: 240 FLPLPLAQPALDQGLLVARQVQEPRPPEPVCLAWRTAEAGEGLKWWIARMKESPDIVARL 299