BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0121.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004417525.1| AraC family transcriptional regulator [Pusil...   139   1e-31
gb|EGD00089.1| AraC family transcriptional regulator [Burkholder...   138   3e-31
ref|ZP_02960645.2| hypothetical protein PROSTU_02608 [Providenci...   137   5e-31
ref|YP_001900411.1| AraC family transcriptional regulator [Ralst...   137   6e-31
gb|AEG68183.1| adaptative response regulator AdA [Ralstonia sola...   135   2e-30

>ref|YP_004417525.1| AraC family transcriptional regulator [Pusillimonas sp. T7-7]
 gb|AEC20901.1| AraC family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 358

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 76/86 (88%)

Query: 1   LGDDPDRLVRDLQDQFPQAELIGGDATFEKLVAKVIGFIESPQGDLNLPLDVRGTAFQQR 60
           LGDDP+ LVR+LQDQFP+A+L+GGDA FE+L+A+V+GFIE+P   LNLPLDVRGTAFQQR
Sbjct: 222 LGDDPEALVRNLQDQFPKAQLLGGDANFEQLIAQVVGFIETPALGLNLPLDVRGTAFQQR 281

Query: 61  VWQALRDIPAGQRVTYSDIAGRIGSP 86
           VWQALR+IP G  V+YSDIA RIG P
Sbjct: 282 VWQALREIPPGSTVSYSDIAERIGQP 307


>gb|EGD00089.1| AraC family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 358

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 76/86 (88%)

Query: 1   LGDDPDRLVRDLQDQFPQAELIGGDATFEKLVAKVIGFIESPQGDLNLPLDVRGTAFQQR 60
           LGDDPD LVR+LQDQFPQA+L+GGDA FE L+A+V+GF+E+P   LNLPLDVRGTAFQ+R
Sbjct: 222 LGDDPDLLVRNLQDQFPQAQLVGGDADFEALIAQVVGFVEAPSIGLNLPLDVRGTAFQER 281

Query: 61  VWQALRDIPAGQRVTYSDIAGRIGSP 86
           VWQALRDIP G  V+Y++IA RIG+P
Sbjct: 282 VWQALRDIPPGTTVSYAEIAQRIGAP 307


>ref|ZP_02960645.2| hypothetical protein PROSTU_02608 [Providencia stuartii ATCC 25827]
 gb|EDU59419.1| hypothetical protein PROSTU_02608 [Providencia stuartii ATCC 25827]
          Length = 356

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 75/86 (87%)

Query: 1   LGDDPDRLVRDLQDQFPQAELIGGDATFEKLVAKVIGFIESPQGDLNLPLDVRGTAFQQR 60
           LGD+P++L++DLQD+FP AELIGGD+ FE LVA+VIGF+E+P+  LNLPLD+RGTAFQQR
Sbjct: 219 LGDNPEKLLKDLQDKFPHAELIGGDSEFETLVAQVIGFVEAPEIGLNLPLDIRGTAFQQR 278

Query: 61  VWQALRDIPAGQRVTYSDIAGRIGSP 86
           VWQALR IP G  V+YSDIA +IG P
Sbjct: 279 VWQALRTIPVGTTVSYSDIAKQIGHP 304


>ref|YP_001900411.1| AraC family transcriptional regulator [Ralstonia pickettii 12J]
 gb|ACD27979.1| transcriptional regulator, AraC family [Ralstonia pickettii 12J]
          Length = 361

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 75/86 (87%)

Query: 1   LGDDPDRLVRDLQDQFPQAELIGGDATFEKLVAKVIGFIESPQGDLNLPLDVRGTAFQQR 60
           +GDDPD LVRDLQD FP+AELIGGDA+FE LVAKV+GF+E+P   L+LPLDVRGTAFQ+R
Sbjct: 223 MGDDPDALVRDLQDTFPKAELIGGDASFENLVAKVVGFVEAPSIGLDLPLDVRGTAFQER 282

Query: 61  VWQALRDIPAGQRVTYSDIAGRIGSP 86
           VWQALR++P G   +Y++IA RIG+P
Sbjct: 283 VWQALREVPPGSTTSYTEIAARIGAP 308


>gb|AEG68183.1| adaptative response regulator AdA [Ralstonia solanacearum Po82]
          Length = 390

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 74/86 (86%)

Query: 1   LGDDPDRLVRDLQDQFPQAELIGGDATFEKLVAKVIGFIESPQGDLNLPLDVRGTAFQQR 60
           LG+DPD LVRDLQDQFP+AELIGGDA FE LVAKV+G IE+P   L+LPLDVRGTAFQ+R
Sbjct: 254 LGEDPDALVRDLQDQFPKAELIGGDAGFESLVAKVVGLIEAPSIGLDLPLDVRGTAFQER 313

Query: 61  VWQALRDIPAGQRVTYSDIAGRIGSP 86
           VWQALR+IP G   +Y++IA RIG+P
Sbjct: 314 VWQALREIPPGTTASYAEIAARIGAP 339