BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0120.p         (168 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_436663.1| adenosine deaminase [Hahella chejuensis KCTC 23...   184   3e-45
ref|ZP_03627037.1| transcriptional regulator, AraC family [bacte...   177   4e-43
ref|YP_003799147.1| methylated-DNA-[protein]-cysteine S-methyltr...   174   4e-42
ref|YP_003754477.1| AraC family transcriptional regulator [Hypho...   171   3e-41
ref|YP_003450593.1| methylated-DNA-[protein]-cysteine S-methyltr...   170   6e-41

>ref|YP_436663.1| adenosine deaminase [Hahella chejuensis KCTC 2396]
 gb|ABC32238.1| Adenosine deaminase [Hahella chejuensis KCTC 2396]
          Length = 358

 Score =  184 bits (468), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/153 (57%), Positives = 112/153 (73%)

Query: 11  NSAAAVAHVAADLDDRRWLAVTQRDKAADGTFYYAVRTTGVYCRPSCPSRQARRENVAFY 70
           N+++      A ++D RW A+ +RD  ADG+FYY+V+TTGVYCRPSC +R  R ENV FY
Sbjct: 2   NASSKPTQTDATMNDPRWRALQERDTRADGSFYYSVKTTGVYCRPSCAARTPRPENVRFY 61

Query: 71  DSGAQAEQAGFRACKRCKPNEAALGERRAQAIATVCRAIEQAEDLPSLDELAQIAGMSRF 130
           DS   AEQAGFR C+RC+P+  +L  R+A+ IAT CR I  +E  PSLDELAQ AGMS+F
Sbjct: 62  DSIEDAEQAGFRPCRRCRPDAPSLAARQAEKIATACRLIAGSETFPSLDELAQCAGMSKF 121

Query: 131 HFHRVFKEKTGVTPKAYAAAQRAGLRDHVGRRS 163
           HFHRVFK+ TG+TP++YAAAQR    D   +RS
Sbjct: 122 HFHRVFKQITGLTPRSYAAAQRKQRLDGALQRS 154


>ref|ZP_03627037.1| transcriptional regulator, AraC family [bacterium Ellin514]
 gb|EEF62446.1| transcriptional regulator, AraC family [bacterium Ellin514]
          Length = 412

 Score =  177 bits (449), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 98/131 (74%)

Query: 22  DLDDRRWLAVTQRDKAADGTFYYAVRTTGVYCRPSCPSRQARRENVAFYDSGAQAEQAGF 81
           D DD RWLAV QR+  ADG F Y+V TTGVYCRP+CPSR A REN+AF+D+   AE+AGF
Sbjct: 61  DTDDLRWLAVQQRNPNADGHFVYSVATTGVYCRPACPSRLALRENIAFHDTCTDAERAGF 120

Query: 82  RACKRCKPNEAALGERRAQAIATVCRAIEQAEDLPSLDELAQIAGMSRFHFHRVFKEKTG 141
           R CKRC+P  A+L +R A A A  CR IE ++ LPSLDELA   G+SR+HFHR+FK+  G
Sbjct: 121 RPCKRCQPTGASLAKRHADAAAKACRIIETSDPLPSLDELANAVGLSRYHFHRIFKKTVG 180

Query: 142 VTPKAYAAAQR 152
           VTP+ Y AA R
Sbjct: 181 VTPRQYFAAHR 191


>ref|YP_003799147.1| methylated-DNA-[protein]-cysteine S-methyltransferase [Candidatus
           Nitrospira defluvii]
 emb|CBK43222.1| Methylated-DNA-[protein]-cysteine S-methyltransferase [Candidatus
           Nitrospira defluvii]
          Length = 362

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 103/138 (74%), Gaps = 1/138 (0%)

Query: 25  DRRWLAVTQRDKAADGTFYYAVRTTGVYCRPSCPSRQARRENVAFYDSGAQAEQAGFRAC 84
           D RW A+  RD AADGTFYY+VRTTGVYCRPSC +RQ  RENV F+ + A AEQAGFR C
Sbjct: 18  DPRWAAILARDPAADGTFYYSVRTTGVYCRPSCAARQPLRENVRFHATCADAEQAGFRPC 77

Query: 85  KRCKPNEAALGERRAQAIATVCRAIEQAEDLPSLDELAQIAGMSRFHFHRVFKEKTGVTP 144
           KRC+P++ +  +R+A+ +  +CR IEQAE LPSLDELAQ A MS  HFHRVF   TG+TP
Sbjct: 78  KRCRPDQPSSVDRQARIVVAICRYIEQAEHLPSLDELAQRAKMSPSHFHRVFTSATGLTP 137

Query: 145 KAYAAAQRAG-LRDHVGR 161
           + YA A RA  +R  +GR
Sbjct: 138 RGYAVAHRATRVRCELGR 155


>ref|YP_003754477.1| AraC family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gb|ADJ22156.1| transcriptional regulator, AraC family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 368

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 104/141 (73%), Gaps = 1/141 (0%)

Query: 24  DDRRWLAVTQRDKAADGTFYYAVRTTGVYCRPSCPSRQARRENVAFYDSGAQAEQAGFRA 83
           D  RW AV  RD + DG FYY+V TTGVYCRPSC +R ARRENVAF+ S A+AE+AGFR 
Sbjct: 25  DAARWSAVKARDASFDGKFYYSVLTTGVYCRPSCSARLARRENVAFHASCAEAERAGFRP 84

Query: 84  CKRCKPNEAALGERRAQAIATVCRAIEQAEDLPSLDELAQIAGMSRFHFHRVFKEKTGVT 143
           CKRCKPNE++L ++ A  I   CR IEQ+++ P LDELAQ  G+S +HFHRVFK   G+T
Sbjct: 85  CKRCKPNESSLRDQYAAKILDACRRIEQSDEPPKLDELAQATGLSTYHFHRVFKAIVGLT 144

Query: 144 PKAYAAAQRAG-LRDHVGRRS 163
           PKAYA A R   +R+++ R S
Sbjct: 145 PKAYAVAHRQKRVRENLARSS 165


>ref|YP_003450593.1| methylated-DNA-[protein]-cysteine S-methyltransferase [Azospirillum
           sp. B510]
 dbj|BAI74049.1| methylated-DNA-[protein]-cysteine S-methyltransferase [Azospirillum
           sp. B510]
          Length = 385

 Score =  170 bits (431), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 99/127 (77%)

Query: 27  RWLAVTQRDKAADGTFYYAVRTTGVYCRPSCPSRQARRENVAFYDSGAQAEQAGFRACKR 86
           RW A+ +RD AADG F YAVR+TGVYCRPSC +R AR  NV FY + A+AE+AGFR CKR
Sbjct: 26  RWEALRRRDPAADGLFVYAVRSTGVYCRPSCAARPARPANVVFYATNAEAERAGFRPCKR 85

Query: 87  CKPNEAALGERRAQAIATVCRAIEQAEDLPSLDELAQIAGMSRFHFHRVFKEKTGVTPKA 146
           C+P+  + G+RRA+A+A  CR IE+AED P L++LA  AGMS  HFHR+FK+ TGVTP+A
Sbjct: 86  CRPDGPSQGDRRAEAVARACRLIEEAEDAPRLEDLAAAAGMSPHHFHRIFKQVTGVTPRA 145

Query: 147 YAAAQRA 153
           Y  AQRA
Sbjct: 146 YVEAQRA 152