BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0116.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08782996.1| FMN-binding negative transcriptional regulato... 255 3e-66 ref|YP_933957.1| negative transcriptional regulator [Azoarcus sp... 241 3e-62 ref|YP_001547356.1| FMN-binding negative transcriptional regulat... 239 1e-61 ref|YP_004845696.1| FMN-binding negative transcriptional regulat... 238 5e-61 ref|YP_283320.1| negative transcriptional regulator [Dechloromon... 236 2e-60 >ref|ZP_08782996.1| FMN-binding negative transcriptional regulator [Methylobacter tundripaludum SV96] gb|EGW19641.1| FMN-binding negative transcriptional regulator [Methylobacter tundripaludum SV96] Length = 214 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 119/212 (56%), Positives = 160/212 (75%), Gaps = 1/212 (0%) Query: 1 VYLPSHFAESDLNVLHRLMQDHPLSTLVTQTSAGLDVNHIPLILSAGEGEHGVLRGHVAR 60 +Y+PS F + ++ V+H L+++ PL+TLVT S G++ NHIPL LS+ GVLRGH+AR Sbjct: 1 MYIPSQFEQPNIEVMHELIRNRPLATLVTLGSNGINANHIPLHLSSTPEPFGVLRGHIAR 60 Query: 61 ANPVWKDFVATTDALAVFQGADAYISPSWYPTKKENGKAVPTWNYAVVHAGGPMRVIDDA 120 ANP+W++ A + LA+F G DAYISPSWY TK+E GK VPTWNYAVVHA G +R+IDDA Sbjct: 61 ANPLWRELAADVETLAIFHGPDAYISPSWYATKQEAGKVVPTWNYAVVHAYGLLRIIDDA 120 Query: 121 EWLRSLVTRLTTHHEAAMAQPWSVGDAPPDYIDKMIGAIVGIEITITTLVGKWKVSQNQP 180 W+R+ + LT H+EAA + W+V DAP D+ +K+IGA+VGIE+ +T L+GKWKVSQNQP Sbjct: 121 AWIRTQLEALTQHNEAAFPESWAVSDAPEDFTEKLIGAVVGIEMVVTRLIGKWKVSQNQP 180 Query: 181 AQNRTGVVDGLLSGVQPNAAAMAALV-AGKKD 211 +QN+ V++GL + Q A MAALV AG K+ Sbjct: 181 SQNQRSVIEGLNARGQSEAVTMAALVNAGVKN 212 >ref|YP_933957.1| negative transcriptional regulator [Azoarcus sp. BH72] emb|CAL95070.1| probable negative transcriptional regulator [Azoarcus sp. BH72] Length = 213 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 114/206 (55%), Positives = 149/206 (72%) Query: 1 VYLPSHFAESDLNVLHRLMQDHPLSTLVTQTSAGLDVNHIPLILSAGEGEHGVLRGHVAR 60 +Y+P+HFAE D LH LM+ HPL+T+VT +SAGL +H+PL ++ +LRGHVAR Sbjct: 1 MYIPAHFAEPDPEKLHALMRAHPLATVVTTSSAGLSADHLPLHIAMASDGRLLLRGHVAR 60 Query: 61 ANPVWKDFVATTDALAVFQGADAYISPSWYPTKKENGKAVPTWNYAVVHAGGPMRVIDDA 120 ANP+W++ ALAVF G +AY++P+WYP K+++G+AVPTWNYAVVHA G +R IDD Sbjct: 61 ANPLWRNAADGVAALAVFAGPEAYVTPTWYPAKRDHGRAVPTWNYAVVHAHGSLRAIDDP 120 Query: 121 EWLRSLVTRLTTHHEAAMAQPWSVGDAPPDYIDKMIGAIVGIEITITTLVGKWKVSQNQP 180 WLRS++ LT HE A QPW++ DAP DYID M+ A+VGIEI + L GK+K SQNQP Sbjct: 121 AWLRSVLAELTAAHEGARPQPWTLDDAPSDYIDAMLRAVVGIEIEVQRLEGKYKASQNQP 180 Query: 181 AQNRTGVVDGLLSGVQPNAAAMAALV 206 A NR GV++GL + A AMA LV Sbjct: 181 AANRAGVIEGLRGEGREQARAMADLV 206 >ref|YP_001547356.1| FMN-binding negative transcriptional regulator [Herpetosiphon aurantiacus DSM 785] gb|ABX07228.1| FMN-binding negative transcriptional regulator [Herpetosiphon aurantiacus DSM 785] Length = 212 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 109/210 (51%), Positives = 149/210 (70%) Query: 1 VYLPSHFAESDLNVLHRLMQDHPLSTLVTQTSAGLDVNHIPLILSAGEGEHGVLRGHVAR 60 +Y+P+HFAE + VLH L+Q PL+T++T + G++ NHIPL L GE G L GHVAR Sbjct: 1 MYIPNHFAEPNPEVLHELIQRQPLATIITLGAEGINANHIPLYLDPQAGEFGTLYGHVAR 60 Query: 61 ANPVWKDFVATTDALAVFQGADAYISPSWYPTKKENGKAVPTWNYAVVHAGGPMRVIDDA 120 AN +W++ + + LA+F G D+YI+PSWY +K + GK VPTWNYAV HA GP++VIDD Sbjct: 61 ANHMWQEHDSQHEVLAIFHGTDSYITPSWYASKAQTGKVVPTWNYAVAHAYGPLQVIDDP 120 Query: 121 EWLRSLVTRLTTHHEAAMAQPWSVGDAPPDYIDKMIGAIVGIEITITTLVGKWKVSQNQP 180 +WLR + +LT H+EA+ W V DAP DY + ++ AIVGI I +T L+GKWKVSQNQP Sbjct: 121 QWLRQQLEQLTNHNEASFEHQWQVADAPHDYTEALLKAIVGIAIPVTRLLGKWKVSQNQP 180 Query: 181 AQNRTGVVDGLLSGVQPNAAAMAALVAGKK 210 N+ GV+ GL + +PNAAAM L+ ++ Sbjct: 181 QANQQGVIAGLAASSEPNAAAMIDLIKQRQ 210 >ref|YP_004845696.1| FMN-binding negative transcriptional regulator [Pseudogulbenkiania sp. NH8B] dbj|BAK75282.1| FMN-binding negative transcriptional regulator [Pseudogulbenkiania sp. NH8B] Length = 212 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 109/191 (57%), Positives = 133/191 (69%) Query: 1 VYLPSHFAESDLNVLHRLMQDHPLSTLVTQTSAGLDVNHIPLILSAGEGEHGVLRGHVAR 60 + LP HF +H LM+ PL+ LV T+AGL+ NHIPL+ S G LRGHVAR Sbjct: 1 MCLPKHFEAPSTEAMHELMRLAPLAMLVASTAAGLEANHIPLLWSPDPAPSGCLRGHVAR 60 Query: 61 ANPVWKDFVATTDALAVFQGADAYISPSWYPTKKENGKAVPTWNYAVVHAGGPMRVIDDA 120 ANP+W++ +ALAVF G DAY+SP WYP+K +GKAVPTWNY VHA G +RVIDD Sbjct: 61 ANPLWRNVTGECEALAVFHGPDAYVSPGWYPSKHTDGKAVPTWNYVAVHAYGRLRVIDDR 120 Query: 121 EWLRSLVTRLTTHHEAAMAQPWSVGDAPPDYIDKMIGAIVGIEITITTLVGKWKVSQNQP 180 +WLR +T LT HEA MA PW + DAP DYIDK++ A+VGIE+ ++ L GKWK SQNQP Sbjct: 121 DWLREQLTLLTAEHEAGMASPWQLSDAPADYIDKLLAAVVGIELVVSRLEGKWKASQNQP 180 Query: 181 AQNRTGVVDGL 191 A NR GV GL Sbjct: 181 AANRAGVAAGL 191 >ref|YP_283320.1| negative transcriptional regulator [Dechloromonas aromatica RCB] gb|AAZ44850.1| negative transcriptional regulator [Dechloromonas aromatica RCB] Length = 205 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 111/191 (58%), Positives = 142/191 (74%) Query: 1 VYLPSHFAESDLNVLHRLMQDHPLSTLVTQTSAGLDVNHIPLILSAGEGEHGVLRGHVAR 60 +YLP HFAE+D+ LH LM+++PL+TLV+ GL+ NHIPL L AG +G L+GH+AR Sbjct: 1 MYLPKHFAETDIGTLHALMREYPLATLVSHGPDGLNANHIPLHLDAGASPNGTLQGHIAR 60 Query: 61 ANPVWKDFVATTDALAVFQGADAYISPSWYPTKKENGKAVPTWNYAVVHAGGPMRVIDDA 120 ANP+ K + L +FQG + YISPS Y TK E+GK VPTWNY VHA G +R+IDDA Sbjct: 61 ANPLAKASAVDGEVLVIFQGPEGYISPSGYATKAEHGKVVPTWNYTAVHAYGQLRLIDDA 120 Query: 121 EWLRSLVTRLTTHHEAAMAQPWSVGDAPPDYIDKMIGAIVGIEITITTLVGKWKVSQNQP 180 +W+ + V+ LT HEA++ QPWSV DAP DYI+KM+GAIVGIEITI LVGKWKVSQNQP Sbjct: 121 DWVLAQVSALTAAHEASLPQPWSVSDAPADYIEKMLGAIVGIEITIDRLVGKWKVSQNQP 180 Query: 181 AQNRTGVVDGL 191 A N+ ++ + Sbjct: 181 ATNQASLIAAM 191