BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0111.p (380 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775083.1| branched-chain amino acid ABC transporter pe... 657 0.0 ref|YP_584626.1| leucine ABC transporter subunit substrate-bindi... 642 0.0 ref|YP_296525.1| extracellular ligand-binding receptor [Ralstoni... 639 0.0 ref|YP_004686308.1| HAAT family ABC transporter permease [Cupria... 631 e-179 ref|YP_727076.1| ABC transporter periplasmic protein [Ralstonia ... 630 e-178 >ref|YP_003775083.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63175.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 373 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/349 (93%), Positives = 339/349 (97%) Query: 32 QAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAGGAGGNKFEAVLMDDACEPKQA 91 AETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAGGA GNKFEAV+MDDACEPKQA Sbjct: 25 HAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAGGANGNKFEAVMMDDACEPKQA 84 Query: 92 VAVANKIVSQGIKFVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKYIFRT 151 VAVANKIVSQGIK+VIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHK+IFRT Sbjct: 85 VAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKFIFRT 144 Query: 152 IGRDDQQGPAAAKYVVEKLKPKKAAVLHDKQSYGQGVATSVKAGLDAAKIPVVVFEGVNA 211 IGRDDQQGPAAA+YV+EKLKPKK AVLHDKQSYGQGVA+SVKA LDAAK+PVVVFEG+NA Sbjct: 145 IGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASSVKAALDAAKVPVVVFEGINA 204 Query: 212 GDSDYSAVITKLKSQGVDFVYFGGYHPEMGLIMRQAREQGVKAVFMGPEGVGNKDITAIA 271 GDSDYSA++TKLKSQGVDFVYFGGYHPEMGLIMRQAREQG+KAVFMGPEGVGNKDITAIA Sbjct: 205 GDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGIKAVFMGPEGVGNKDITAIA 264 Query: 272 GPASEGMLVTLPADFAADPANAALVKAFAAQKRDPNGPFQMPAYSGVKVIADAITATKST 331 GPASEGMLVTLPADFAADPANAALVKAFAA KRDPNGPFQMPAYSGVK+IADAI KST Sbjct: 265 GPASEGMLVTLPADFAADPANAALVKAFAAAKRDPNGPFQMPAYSGVKIIADAIAGAKST 324 Query: 332 DPTKVAAYIHANSFKTPIGTVEYDKKGDLKSFKFVVFTWHKDATKTEAK 380 DP KVAAYIHANSFKTPIG VEYDKKGDLKSFKFVVFTWHKDA+KTEAK Sbjct: 325 DPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFKFVVFTWHKDASKTEAK 373 >ref|YP_584626.1| leucine ABC transporter subunit substrate-binding protein LivK [Cupriavidus metallidurans CH34] gb|ABF09357.1| leucine/isoleucine/valine transporter subunit, periplasmic-binding component of ABC superfamily [Cupriavidus metallidurans CH34] Length = 375 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/371 (82%), Positives = 337/371 (90%) Query: 10 RLTKVAMAVGVAVSAISFAGIAQAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAA 69 RLT AMA +A + ++ A AET+KIAIAGPM+G+VAQYGDMVKAGALTAIEQINAA Sbjct: 5 RLTSTAMAAVLATAGLAAFTSANAETIKIAIAGPMSGSVAQYGDMVKAGALTAIEQINAA 64 Query: 70 GGAGGNKFEAVLMDDACEPKQAVAVANKIVSQGIKFVIGHVCSGSTIPASDIYENEGVVM 129 GGA GNKFEAV+MDDACEPKQAVAVANKIVSQGI +VIGHVCSGSTIPASDIYENEG+VM Sbjct: 65 GGANGNKFEAVMMDDACEPKQAVAVANKIVSQGIHYVIGHVCSGSTIPASDIYENEGIVM 124 Query: 130 ITPSATAPQLTEAKPHKYIFRTIGRDDQQGPAAAKYVVEKLKPKKAAVLHDKQSYGQGVA 189 +TPSATAPQLTE K +IFRTIGRDDQQGPAAA+Y++ K+KPKK AVLHDKQSYGQG+A Sbjct: 125 VTPSATAPQLTETKKRNFIFRTIGRDDQQGPAAAQYIINKVKPKKVAVLHDKQSYGQGIA 184 Query: 190 TSVKAGLDAAKIPVVVFEGVNAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLIMRQARE 249 +SVK L+AAKIPV VFEG+NAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGL++RQARE Sbjct: 185 SSVKKDLEAAKIPVAVFEGINAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLLLRQARE 244 Query: 250 QGVKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAQKRDPNGP 309 QGVKA FMGPEGVGNKD+TAIAGPASEGMLVTLPADF+ADPANAALVKAFA +KRDPNGP Sbjct: 245 QGVKATFMGPEGVGNKDVTAIAGPASEGMLVTLPADFSADPANAALVKAFADKKRDPNGP 304 Query: 310 FQMPAYSGVKVIADAITATKSTDPTKVAAYIHANSFKTPIGTVEYDKKGDLKSFKFVVFT 369 FQMPAY+ VK+I DAIT KSTDPTKVAAY+H N+F TPIG VEYD KGDLKSFKFVV+T Sbjct: 305 FQMPAYAAVKIIGDAITGAKSTDPTKVAAYMHKNAFNTPIGKVEYDAKGDLKSFKFVVYT 364 Query: 370 WHKDATKTEAK 380 WHKDATKT A Sbjct: 365 WHKDATKTAAN 375 >ref|YP_296525.1| extracellular ligand-binding receptor [Ralstonia eutropha JMP134] gb|AAZ61681.1| L-isoleucine-binding protein / L-leucine-binding protein / L-valine-binding protein [Ralstonia eutropha JMP134] Length = 371 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/370 (82%), Positives = 338/370 (91%), Gaps = 4/370 (1%) Query: 10 RLTKVAMAVGVAVSAISFAGIAQAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAA 69 RLT +++A +A + A AETVKIAIAGPM+GAVAQYGDMVKAGALTAIEQINAA Sbjct: 5 RLTSISLAAVLA----TLGAAANAETVKIAIAGPMSGAVAQYGDMVKAGALTAIEQINAA 60 Query: 70 GGAGGNKFEAVLMDDACEPKQAVAVANKIVSQGIKFVIGHVCSGSTIPASDIYENEGVVM 129 GGAGGNKFEAV+MDDACEPKQAVAVANKIVSQGIK+VIGHVCSGSTIPASDIYENEG+VM Sbjct: 61 GGAGGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGIVM 120 Query: 130 ITPSATAPQLTEAKPHKYIFRTIGRDDQQGPAAAKYVVEKLKPKKAAVLHDKQSYGQGVA 189 +TPSATAPQLTEAK K+IFRTIGRDDQQGPAAA+Y++ K+KPKK AVLHDKQSYGQG+A Sbjct: 121 VTPSATAPQLTEAKKRKFIFRTIGRDDQQGPAAAQYIISKVKPKKVAVLHDKQSYGQGIA 180 Query: 190 TSVKAGLDAAKIPVVVFEGVNAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLIMRQARE 249 TSVK L+AAKIPV +FEG+NAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGL+MRQARE Sbjct: 181 TSVKRDLEAAKIPVALFEGINAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLLMRQARE 240 Query: 250 QGVKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAQKRDPNGP 309 QGVKA FMGPEGVGNKD+TAIAGPASEGMLVTLPADF+ADPANA LVKAFA +KRD NGP Sbjct: 241 QGVKATFMGPEGVGNKDVTAIAGPASEGMLVTLPADFSADPANAGLVKAFADKKRDANGP 300 Query: 310 FQMPAYSGVKVIADAITATKSTDPTKVAAYIHANSFKTPIGTVEYDKKGDLKSFKFVVFT 369 FQMP+Y+ VK++ DAI KSTDPTKVAAY+H N+F+TPIG VEYD KGDLKSFKFVV+T Sbjct: 301 FQMPSYAAVKILGDAIAGAKSTDPTKVAAYMHKNAFQTPIGKVEYDDKGDLKSFKFVVYT 360 Query: 370 WHKDATKTEA 379 WHKDA+KT A Sbjct: 361 WHKDASKTAA 370 >ref|YP_004686308.1| HAAT family ABC transporter permease [Cupriavidus necator N-1] gb|AEI77827.1| ABC transport system permease protein HAAT family [Cupriavidus necator N-1] Length = 371 Score = 631 bits (1627), Expect = e-179, Method: Compositional matrix adjust. Identities = 302/370 (81%), Positives = 335/370 (90%), Gaps = 4/370 (1%) Query: 10 RLTKVAMAVGVAVSAISFAGIAQAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAA 69 RLT +++A +A ++ A AETVKIAIAGPM+G+VAQYGDMVKAGALTAIEQINAA Sbjct: 5 RLTSISLATMLATIGVA----ANAETVKIAIAGPMSGSVAQYGDMVKAGALTAIEQINAA 60 Query: 70 GGAGGNKFEAVLMDDACEPKQAVAVANKIVSQGIKFVIGHVCSGSTIPASDIYENEGVVM 129 GGAGGNKFE V+MDDACEPKQAVAVANKIVSQ IK+VIGHVCSGSTIPASDIYENEG+VM Sbjct: 61 GGAGGNKFEVVMMDDACEPKQAVAVANKIVSQNIKYVIGHVCSGSTIPASDIYENEGIVM 120 Query: 130 ITPSATAPQLTEAKPHKYIFRTIGRDDQQGPAAAKYVVEKLKPKKAAVLHDKQSYGQGVA 189 +TPSATAPQLTE K K+IFRTIGRDDQQGPAAA+Y++ K+KPKK AVLHDKQSYGQG+A Sbjct: 121 VTPSATAPQLTETKKRKFIFRTIGRDDQQGPAAAQYIISKVKPKKVAVLHDKQSYGQGIA 180 Query: 190 TSVKAGLDAAKIPVVVFEGVNAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLIMRQARE 249 +SVK L+AAKIPV VFEG+NAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGL++RQARE Sbjct: 181 SSVKKDLEAAKIPVAVFEGINAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLLLRQARE 240 Query: 250 QGVKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAQKRDPNGP 309 QGVKA FMGPEGVGNKD+TAIAGP+SEGMLVTLPADF+ADPANAALVKAFA +KRD NGP Sbjct: 241 QGVKATFMGPEGVGNKDVTAIAGPSSEGMLVTLPADFSADPANAALVKAFADKKRDANGP 300 Query: 310 FQMPAYSGVKVIADAITATKSTDPTKVAAYIHANSFKTPIGTVEYDKKGDLKSFKFVVFT 369 FQMPAY+ VK+I DAI KSTDP KVAAY+H N+F TPIG VEYD KGDLKSFKFVV+T Sbjct: 301 FQMPAYAAVKIIGDAIAGAKSTDPAKVAAYMHKNAFTTPIGKVEYDDKGDLKSFKFVVYT 360 Query: 370 WHKDATKTEA 379 WHKDA+KT A Sbjct: 361 WHKDASKTAA 370 >ref|YP_727076.1| ABC transporter periplasmic protein [Ralstonia eutropha H16] gb|AAQ05851.1| BraC protein [Cupriavidus necator] emb|CAJ93708.1| ABC-type transporter, periplasmic component: HAAT family [Ralstonia eutropha H16] Length = 371 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 302/370 (81%), Positives = 334/370 (90%), Gaps = 4/370 (1%) Query: 10 RLTKVAMAVGVAVSAISFAGIAQAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAA 69 RLT +++A +A + A AETVKIAIAGPM+G+VAQYGDMVKAGALTAIEQ+NA Sbjct: 5 RLTSISLAAVLA----TLGAAANAETVKIAIAGPMSGSVAQYGDMVKAGALTAIEQLNAN 60 Query: 70 GGAGGNKFEAVLMDDACEPKQAVAVANKIVSQGIKFVIGHVCSGSTIPASDIYENEGVVM 129 GGAGGNKFE V+MDDACEPKQAVAVANKIVSQ IK+VIGHVCSGSTIPASDIYENEG+VM Sbjct: 61 GGAGGNKFEVVMMDDACEPKQAVAVANKIVSQNIKYVIGHVCSGSTIPASDIYENEGIVM 120 Query: 130 ITPSATAPQLTEAKPHKYIFRTIGRDDQQGPAAAKYVVEKLKPKKAAVLHDKQSYGQGVA 189 +TPSATAPQLTE K KYIFRTIGRDDQQGPAAA+Y++ K+KPKK AVLHDKQSYGQG+A Sbjct: 121 VTPSATAPQLTETKKRKYIFRTIGRDDQQGPAAAQYIIGKVKPKKVAVLHDKQSYGQGIA 180 Query: 190 TSVKAGLDAAKIPVVVFEGVNAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLIMRQARE 249 +SVK L+AAKIPV VFEG+NAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGL++RQARE Sbjct: 181 SSVKKDLEAAKIPVAVFEGINAGDSDYSAVITKLKSQGVDFVYFGGYHPEMGLLLRQARE 240 Query: 250 QGVKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAQKRDPNGP 309 QGVKA FMGPEGVGNKD+TAIAGP+SEGMLVTLPADF+ADPANAALVKAFA +KRD NGP Sbjct: 241 QGVKAAFMGPEGVGNKDVTAIAGPSSEGMLVTLPADFSADPANAALVKAFADKKRDANGP 300 Query: 310 FQMPAYSGVKVIADAITATKSTDPTKVAAYIHANSFKTPIGTVEYDKKGDLKSFKFVVFT 369 FQMPAY+ VK+I DAI KSTDPTKVAAY+H N+F TPIG VEYD KGDLKSFKFVV+T Sbjct: 301 FQMPAYAAVKIIGDAIAGAKSTDPTKVAAYMHKNAFTTPIGKVEYDDKGDLKSFKFVVYT 360 Query: 370 WHKDATKTEA 379 WHKDA+KT A Sbjct: 361 WHKDASKTAA 370