BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0109.p (568 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I ... 625 e-177 ref|YP_004751579.1| methyl-accepting chemotaxis sensory transduc... 593 e-167 ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herba... 583 e-164 ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbasp... 563 e-158 ref|YP_003774566.1| methyl-accepting chemotaxis transducer trans... 562 e-158 >ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64222.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 625 bits (1611), Expect = e-177, Method: Compositional matrix adjust. Identities = 336/516 (65%), Positives = 414/516 (80%) Query: 1 MKWFYNLKIAHKLLLSFVAVLLLTTLLGAFSIAQIARVNQASTDISTNWLPAMRAALQMK 60 MKWFY+L+I+ KL+ +F+ V+ + LG FSI Q+ +VN AST+ISTNWLP++R +++ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 TALSRIRVAELQHIQSDNEADFSLYEKSIEGQLAQLKKFDSIYAPLISEPDEKIVYPEFK 120 A+SR+R ELQHI + + ++ E+ ++ Q+ LK + Y ISEP+EK +YPE + Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 KNLAAYLAENQKIVMLARGGLNDEARLLIRGDSTKLYLAMTEQLDRLSGINEAGSAIADQ 180 K +A +++E+ KI+ L+R G ++EAR L RG+STK Y +Q+D+L+ +N+ G+ I+++ Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 TASSTYEAARIWIVVILCISVALGLLLAFWVAAIVSRPLTSAVGIAQRVAAGDLTARIEV 240 A + Y AR+WI+V + + L +LLA WV+ +++RPL AV +AQRVA GDLT RIE Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 QSRDETGQLMGALKAMNDSLLNIVSQVRTGTDTIATASTQIASGNLDLSSRTEEQASSLE 300 +DETGQL+ ALK+MNDSL+ IV QVR GT TI TAST+IASGNLDLSSRTEEQASSLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 301 ETASSMEELTSTVKQNADNARQANQLAESASAVAIQGGSVVGQVVDTMGAINDSSRKIVD 360 ETAS+MEELTSTVKQNADNARQANQLA SAS VA QGG+VV QVVDTMG+IN SSRKI D Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 421 SVGKVDSGSRLVEQAGATMAEVVASVRRVTDIVGEISSASQEQSAGIEQVNQAIAQMDEV 480 SV +VD GS+LVE+AG TM+EVV SVRRVTDIVGEISSASQEQS GIEQVN AIAQMDEV Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAATLSEVVSVFNIGQ 516 TQQNAALVEEAAAAAQSLQ+QA TL++ V F + Q Sbjct: 481 TQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQ 516 >ref|YP_004751579.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK60756.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 635 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 330/546 (60%), Positives = 409/546 (74%), Gaps = 10/546 (1%) Query: 1 MKWFYNLKIAHKLLLSFVAVLLLTTLLGAFSIAQIARVNQASTDISTNWLPAMRAALQMK 60 M WFYNLKIA KLLLSF +L+LT +LG SI Q+ +VN + +I++NWLP++R L +K Sbjct: 96 MTWFYNLKIATKLLLSFALILMLTLVLGVASITQLGQVNATTNEINSNWLPSVRMLLTLK 155 Query: 61 TALSRIRVAELQHIQSDNEADFSLYEKSIEGQLAQLKKFDSIYAPLISEPDEKIVYPEFK 120 + L+ +R E+QH+ S++ AD + I ++K S YAPL+SE +E+ VY + K Sbjct: 156 SNLALLRNVEMQHVMSNDAADMDKSAQFIGDIRGDVQKTLSEYAPLVSE-EERAVYDQLK 214 Query: 121 KNLAAYLAENQKIVMLARGGLNDEARLLIRGDSTKLYLAMTEQLDRLSGINEAGSAIADQ 180 + YL ++KIV ++R D+A IRGDS + + +Q++RL IN GSA + + Sbjct: 215 DKIPRYLEMDKKIVDISRAFRKDDAIKEIRGDSLAAIVELDKQVERLVKINSDGSAASAK 274 Query: 181 TASSTYEAARIWIVVILCISVALGLLLAFWVAAIVSRPLTSAVGIAQRVAAGDLTARIEV 240 + Y AR W++ ++ + LG LA W+A +V++PL AV +A+RVA GDLTA IEV Sbjct: 275 DGEAIYNKARFWMIGLMIAMLLLGFALALWIARVVAQPLEFAVDVARRVAGGDLTADIEV 334 Query: 241 QSRDETGQLMGALKAMNDSLLNIVSQVRTGTDTIATASTQIASGNLDLSSRTEEQASSLE 300 +S DETGQLM ALK MN SL IV +VR+GTDTIATAS QIA+GN +LS RTE+QASSLE Sbjct: 335 RSSDETGQLMQALKDMNHSLQKIVGEVRSGTDTIATASGQIAAGNQNLSQRTEQQASSLE 394 Query: 301 ETASSMEELTSTVKQNADNARQANQLAESASAVAIQGGSVVGQVVDTMGAINDSSRKIVD 360 ETA+SME+LTSTVKQNADNA QANQLA SAS VA+ GG+VV QVV TMGAIN SS+KIVD Sbjct: 395 ETAASMEQLTSTVKQNADNASQANQLAVSASEVALHGGTVVTQVVSTMGAINTSSKKIVD 454 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LIDD Sbjct: 455 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKGLIDD 514 Query: 421 SVGKVDSGSRLVEQAGATMAEVVASVRRVTDIVGEISSASQEQSAGIEQVNQAIAQMDEV 480 SV KV G+RLV+QAG+TM E+VASVRRVTDI+GEI++ASQEQ+AGIEQ+NQAI+QMD+V Sbjct: 515 SVEKVGLGTRLVDQAGSTMEEIVASVRRVTDIMGEITAASQEQTAGIEQINQAISQMDQV 574 Query: 481 TQQNAALVEEAAAAAQSLQDQAATLSEVVSVFNIGQAQVRAVSDVKKTATVAKRAIDVTP 540 TQQNAALVEEAAAAA SLQDQA L+ VV F + +A A A R ID+TP Sbjct: 575 TQQNAALVEEAAAAAASLQDQAGALAGVVGAFKLERAH---------NAAQANRMIDITP 625 Query: 541 RTTALQ 546 L+ Sbjct: 626 HAQMLR 631 >ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ66081.1| methyl-accepting chemotaxis protein I, serine sensor receptor protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 326/514 (63%), Positives = 401/514 (78%) Query: 1 MKWFYNLKIAHKLLLSFVAVLLLTTLLGAFSIAQIARVNQASTDISTNWLPAMRAALQMK 60 M WF NLKIA KL++SF AV++LT +LG F+I ++ VNQASTD++TNWLP ++AA ++ Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 TALSRIRVAELQHIQSDNEADFSLYEKSIEGQLAQLKKFDSIYAPLISEPDEKIVYPEFK 120 +L R+R++ELQ + + A+ K+I+ +L L K + Y ISE +EK++Y +F Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 KNLAAYLAENQKIVMLARGGLNDEARLLIRGDSTKLYLAMTEQLDRLSGINEAGSAIADQ 180 K+ A YL ++++ ++ G +EAR L +GDS K + +M E +D + +N+AGS +D Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 TASSTYEAARIWIVVILCISVALGLLLAFWVAAIVSRPLTSAVGIAQRVAAGDLTARIEV 240 A Y +A +WI+ +L V + L LA VA VSRPL AV +A+RVA GDLT I Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 QSRDETGQLMGALKAMNDSLLNIVSQVRTGTDTIATASTQIASGNLDLSSRTEEQASSLE 300 S DETG LM +L+AMNDSL IV +VRTGTDTI TAS +IA+GNLDLSSRTEEQA SLE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 301 ETASSMEELTSTVKQNADNARQANQLAESASAVAIQGGSVVGQVVDTMGAINDSSRKIVD 360 ETAS+MEELT+TVKQNADNARQANQLA SAS +A QGG+VVGQVV TM I +SS +I D Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 421 SVGKVDSGSRLVEQAGATMAEVVASVRRVTDIVGEISSASQEQSAGIEQVNQAIAQMDEV 480 SV KV +GS+LVE+AGATM+EVVASVRRVTD+V EIS+AS EQS GIE++N+AI QMDEV Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAATLSEVVSVFNI 514 TQQNAALVEEAAAAAQSLQDQAA LS+VVSVF + Sbjct: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ65208.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 319/573 (55%), Positives = 412/573 (71%), Gaps = 7/573 (1%) Query: 1 MKWFYNLKIAHKLLLSFVAVLLLTTLLGAFSIAQIARVNQASTDISTNWLPAMRAALQMK 60 M WFYNLKIAHKL +F+ VL+ LG FS ++A VN++STDI+ NWLP++ A +M Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 TALSRIRVAELQHIQSDNEADFSLYEKSIEGQLAQLKKFDSIYAPLISEPDEKIVYPEFK 120 AL+R R ++Q + + ++ + + + Q+A L K + Y L+SEP EK +YPE + Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 KNLAAYLAENQKIVMLARGGLNDEARLLIRGDSTKLYLAMTEQLDRLSGINEAGSAIADQ 180 +N+A Y ++++ L A L+ ST +Y + EQ+ LS +N G+A++D Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 TASSTYEAARIWIVVILCISVALGLLLAFWVAAIVSRPLTSAVGIAQRVAAGDLTARIEV 240 A Y A + I+ ++ V L + L++W+A +V+RPL +AV IA++VAAGDLTA I Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 241 QSRDETGQLMGALKAMNDSLLNIVSQVRTGTDTIATASTQIASGNLDLSSRTEEQASSLE 300 RDETGQL+ AL+ MN +LLNIV +VR GTDTI TAS +IA+GN+DLSSRTE+QA +LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 301 ETASSMEELTSTVKQNADNARQANQLAESASAVAIQGGSVVGQVVDTMGAINDSSRKIVD 360 ETAS+MEELTSTV+QN+DNARQANQLA +AS VA GG+VVG+VV TM AINDSSRKIVD Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAA EIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 421 SVGKVDSGSRLVEQAGATMAEVVASVRRVTDIVGEISSASQEQSAGIEQVNQAIAQMDEV 480 SV KVD+GS+LV++AG TM EVVASV+RV+DIV EI++A EQ+ GIEQ+N A+ QMDE Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAATLSEVVSVFNIGQAQVRAVSDVKKTATVAKRAIDVTP 540 TQQNAALVE+AAAAA++LQ+QA LSE VSVF + V V V + A A+ D+TP Sbjct: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVV--VSRAAATAQPERDITP 538 Query: 541 RTTALQPRSTPKLVVPRTPDS-----ESDWEQF 568 AL + + P ++ + DWEQF Sbjct: 539 ARPALAQSRSKVMARPAHSNTSASAEQGDWEQF 571 >ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62658.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 316/514 (61%), Positives = 384/514 (74%) Query: 1 MKWFYNLKIAHKLLLSFVAVLLLTTLLGAFSIAQIARVNQASTDISTNWLPAMRAALQMK 60 M WFYNL IA KL LSF V+ LT L G F+I ++ +VN+AS +I + W+P M AA +++ Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 TALSRIRVAELQHIQSDNEADFSLYEKSIEGQLAQLKKFDSIYAPLISEPDEKIVYPEFK 120 +L +R+ EL+ + + + + K+I+ +L L + +I+ +SEP EK Y +F Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 121 KNLAAYLAENQKIVMLARGGLNDEARLLIRGDSTKLYLAMTEQLDRLSGINEAGSAIADQ 180 KNL AY+ ++++ +A DE R L GDS KLY +M LD + IN +GSA AD+ Sbjct: 121 KNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADE 180 Query: 181 TASSTYEAARIWIVVILCISVALGLLLAFWVAAIVSRPLTSAVGIAQRVAAGDLTARIEV 240 AS+ + A+ WIV +L +V + LLAF VA VSRPL AV IAQRVA GDLT RI Sbjct: 181 EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRP 240 Query: 241 QSRDETGQLMGALKAMNDSLLNIVSQVRTGTDTIATASTQIASGNLDLSSRTEEQASSLE 300 RDETG LM AL+AMN+SL +IVS+VR GTDTI TAS +IA GNLDLS+RTE+QA SLE Sbjct: 241 AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLE 300 Query: 301 ETASSMEELTSTVKQNADNARQANQLAESASAVAIQGGSVVGQVVDTMGAINDSSRKIVD 360 ETAS+MEELTSTV QNADNARQANQLA +AS +A QGG VVGQVV TM I +SSR+I D Sbjct: 301 ETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 Query: 421 SVGKVDSGSRLVEQAGATMAEVVASVRRVTDIVGEISSASQEQSAGIEQVNQAIAQMDEV 480 SV KV +GS LVE+AG+TM EVVASVRRVTD+V EIS+A+QEQS GI +VN AI QMDE Sbjct: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAATLSEVVSVFNI 514 TQQNAALVE+AAAAA SL+ QA+ L+ VV F + Sbjct: 481 TQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514