BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0099.p (503 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_107370.1| putative phage-related integrase [Burkholderia ... 212 1e-52 ref|YP_001898049.1| integrase family protein [Ralstonia picketti... 207 3e-51 ref|YP_004361909.1| putative phage-related integrase [Burkholder... 205 2e-50 ref|YP_001120593.1| phage integrase family protein [Burkholderia... 191 2e-46 ref|ZP_04888236.1| putative phage-related integrase [Burkholderi... 191 4e-46 >ref|YP_107370.1| putative phage-related integrase [Burkholderia pseudomallei K96243] ref|YP_001065090.1| phage integrase family site specific recombinase [Burkholderia pseudomallei 1106a] ref|ZP_02446123.1| site-specific recombinase, phage integrase family protein [Burkholderia pseudomallei 91] ref|ZP_04813346.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1106b] ref|ZP_04894109.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04949336.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1710a] emb|CAH34736.1| putative phage-related integrase [Burkholderia pseudomallei K96243] gb|ABN88733.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1106a] gb|EDO90947.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei Pasteur 52237] gb|EES23971.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1106b] gb|EET06355.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1710a] Length = 452 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 149/454 (32%), Positives = 227/454 (50%), Gaps = 26/454 (5%) Query: 32 KAPRLYRNRCGVFYFRLKTAQQDRKVSLRTKCPVTANIVALQLNAVIERNRAMNKNSNNP 91 K P L+++R GVFY RL ++ K SLRTK A ++AL N + AM + P Sbjct: 3 KLPHLFKSRHGVFYLRLACGGEEVKRSLRTKDFRQARLLALAFNLEL----AMKTPDDKP 58 Query: 92 NIGDFNFNLDDLKTYEIEF-RGAKIKAEGPEDHARAMEAL--KQMEAVLPEEVS---PAV 145 DFN + + LK ++ F G ++K +D R + L + A +P S PA Sbjct: 59 KAADFNLDAESLKRLDVIFPDGTQVKDINTDDDVRRAKELFGDRFAAAVPAPPSFDLPAF 118 Query: 146 QKLASDEQALLAQVVAHAQQRQSPKVSKVAAEWIMERRLKNSARTVDAKEYHFKDFTERA 205 S A+ AQ +R++ + VA + E+ L N+ART+ AKE F DF +R Sbjct: 119 S--PSVAAAIAAQKAVQETKRKAKPFADVAKLYKKEKALDNTARTITAKERAFADFEKRI 176 Query: 206 LKGKNPEINELDKSDIVAYKSALLKKGQAAKTIDNKLLSIADFFEYALNQGTYTRHNTNP 265 G P I+ D VAYK+AL+ +G +A I+ KL + D F YAL G R NP Sbjct: 177 --GSRP-IDAYLIDDAVAYKNALIDEGGSASRINAKLSFLRDLFAYALANGL--RAEANP 231 Query: 266 VSGLYVLTKKERVKQTESYEPFSKEDLTVLFEPLAYKTKMNAPDLFWGPLLGIYTGMRIS 325 + V +K + +Q SY+PFS +D+ +F+P AY +M+ P W P L +Y+G R+ Sbjct: 232 FENVKVSSKSKLEQQKRSYKPFSADDIATIFDPTAYPARMDKPAYRWFPFLALYSGARLE 291 Query: 326 EATQIRCKDVIQAENGVHYIYVYRSKTSNGIRKVPICDALIQLGFLDYVEEVRQAGAERI 385 E + IQ E V + + ++K +N R++P+ +++ GFL Y E +R+ GA ++ Sbjct: 292 ELASLSLSQ-IQREGDVWFFDIQKAKNANSQRRIPLHRVVVESGFLAYAEGLRERGATQL 350 Query: 386 FPHRSFVNGSYSKRLSEEHLKYLKARKIKTPDDHKSFHSFRVNVITQLANNGISATLASR 445 FP Y K ++ YL RKI DD K FHSFR I ++ + + Sbjct: 351 FPELKPGANGYGKNITRRFADYLDERKIT--DDRKVFHSFRHTFIGRMTELNVHPAMLMA 408 Query: 446 IVGHGTEKGMDV---HLG---YVRDLPNLKQVVD 473 +VGH + +D H +V+ L LK +D Sbjct: 409 LVGHYDQAKVDFSSPHFANYQHVKPLAELKATLD 442 >ref|YP_001898049.1| integrase family protein [Ralstonia pickettii 12J] gb|ACD25617.1| integrase family protein [Ralstonia pickettii 12J] Length = 439 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 145/462 (31%), Positives = 228/462 (49%), Gaps = 43/462 (9%) Query: 32 KAPRLYRNRCGVFYFRLKTAQQDRKVSLRTKCPVTANIVALQLNAVIERNRAMNKNSNNP 91 K PRL R+R GV+Y RL + D + SL TK A + AL LN +E +++ Sbjct: 3 KIPRLLRSRHGVYYLRLTHGKTDTRRSLGTKDFQRAKLSALLLNVHVEMSKS-------- 54 Query: 92 NIGDFNFNLDDLKTYEIEF-RGAKIKAEGPEDHARAMEALKQMEAVLPEEVSPAVQKLAS 150 + + + +I G K+ PED + L +++ ++LA+ Sbjct: 55 -----RLDAEMFRHLDIALPNGVKLTNIQPEDKGILFDIL--------DKLGVTGEQLAA 101 Query: 151 DEQALLAQVVA--HAQQRQSPK-----VSKVAAEWIMERRLKNSARTVDAKEYHFKDFTE 203 +A+++A Q+ + PK +S V A ++ E++L N A+T++ KE + FTE Sbjct: 102 MPTTEVARLLAGPEPQRMEPPKPKSKPLSDVIALYLTEKKLDNVAKTLEDKE---RTFTE 158 Query: 204 RALKGKNPEINELDKSDIVAYKSALLKKGQAAKTIDNKLLSIADFFEYALNQGTYTRHNT 263 ++ +IN D +AYK+ LL +A I+ K + D F YA+N Y T Sbjct: 159 FQGFFQDSDINAFDADTAIAYKNRLLAANASASRINAKTSFLRDLFAYAINNNLY--FTT 216 Query: 264 NPVSGLYVLTKKERVKQTESYEPFSKEDLTVLFEPLAYKTKMNAPDLFWGPLLGIYTGMR 323 NP + V +K + +Q ESY F+ +DL ++F Y+ MN PD W PLL +YTG R Sbjct: 217 NPFEKVRVSSKTKLKQQVESYREFTDDDLKLIFAEAPYREFMNKPDYHWLPLLALYTGAR 276 Query: 324 ISEATQIRCKDVIQAENGVHYIYVYRSKTSNGIRKVPICDALIQLGFLDYVEEVRQAGAE 383 + E + I+ + G+HY + ++K N IRK+P+ + GFL YV+ VR GA Sbjct: 277 VEELASLSLNQ-IKKDGGIHYFEIEKAKNLNSIRKIPLHRQIETSGFLAYVDSVRAQGAT 335 Query: 384 RIFPHRSFVNGSYSKRLSEEHLKYLKARKIKTPDDHKSFHSFRVNVITQLANNGISATLA 443 +FPH + YSK +S YL + KI D K FHSFR IT++ + L Sbjct: 336 MLFPHLTAGKNGYSKNMSRRFGAYLDSLKIS--DSRKVFHSFRHTFITRMTELNVHPVLV 393 Query: 444 SRIVGHGTEKGMDVHLGYV------RDLPNLKQVVDSLIWPL 479 +VGH + +D+ +V + L LKQ +D L +P+ Sbjct: 394 MSMVGHYAQAKVDLSAPHVVNYQHEKPLSVLKQTIDRLEFPI 435 >ref|YP_004361909.1| putative phage-related integrase [Burkholderia gladioli BSR3] gb|AEA61953.1| putative phage-related integrase [Burkholderia gladioli BSR3] Length = 532 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 144/458 (31%), Positives = 224/458 (48%), Gaps = 26/458 (5%) Query: 32 KAPRLYRNRCGVFYFRLKTAQQDRKVSLRTKCPVTANIVALQLNAVIERNRAMNKNSNNP 91 K P LY+NR GV+Y RL ++ K SLRTK A I AL N + AM+K P Sbjct: 3 KLPHLYKNRFGVYYLRLVRNGREAKKSLRTKDYRQAKIWALSFNLEL----AMSK----P 54 Query: 92 NIGDFNFNLDDLKTYEIEF-RGAKIK-AEGPEDHARAMEALKQMEAVLPEEVSPAVQKLA 149 DF+ + K +++ G +IK E ED A E A LP P Sbjct: 55 GAADFDLSRVSAKDFDVVLPDGTQIKNIETAEDVRLAKEMFGDRLATLPPMNLPVFTPAM 114 Query: 150 SDEQALLAQVVAHAQQRQSPKVSKVAAEWIMERRLKNSARTVDAKEYHFKDFTERALKGK 209 + A + + S + VA + E+ L N+ RT+ AKE F DF +G Sbjct: 115 AAAIAAQQASASATTAKPSKPFASVAKLYAKEKALDNTPRTILAKERAFADFQRH--RGA 172 Query: 210 NPEINELDKSDIVAYKSALLKKGQAAKTIDNKLLSIADFFEYALNQGTYTRHNTNPVSGL 269 P I + D V +K+ L+ G +A ++++L + D F YA+ G R NP + Sbjct: 173 RP-IGDYALEDAVEHKNKLIDDGGSASRVNSRLSFLRDIFAYAIANGH--RDGPNPFAAA 229 Query: 270 YVLTKKERVKQTESYEPFSKEDLTVLFEPLAYKTKMNAPDLFWGPLLGIYTGMRISEATQ 329 V +K + +Q SY+PFS +DL +F+P AYK +M+ P W P L +Y+G R+ E Sbjct: 230 KVSSKSKLQQQKRSYKPFSADDLATIFDPTAYKARMDKPAYRWLPFLALYSGARLEELAS 289 Query: 330 IRCKDVIQAENGVHYIYVYRSKTSNGIRKVPICDALIQLGFLDYVEEVRQAGAERIFPHR 389 +R D++Q+E G+ + + ++K SN R++P+ +++ GF+ YV+ +R+ GA ++FP Sbjct: 290 LRI-DLLQSEGGIWFFDIQKAKNSNSQRRIPLHRTVLESGFMAYVDGLRERGATQLFPEL 348 Query: 390 SFVNGSYSKRLSEEHLKYLKARKIKTPDDHKSFHSFRVNVITQLANNGISATLASRIVGH 449 Y K ++ YL RKI DD K FHSFR I ++ + + +VGH Sbjct: 349 KPGANGYGKNVTRRFADYLDERKIV--DDRKVFHSFRHTFIGRMTELNVHPAMLMALVGH 406 Query: 450 GTEKGMDV---HLG---YVRDLPNLKQVVD--SLIWPL 479 + +D H + + L LK +D ++ PL Sbjct: 407 YDQAKVDFSSPHFANYQHAKPLQELKATLDRFDIVLPL 444 >ref|YP_001120593.1| phage integrase family protein [Burkholderia vietnamiensis G4] ref|YP_001578838.1| integrase family protein [Burkholderia multivorans ATCC 17616] ref|YP_001947040.1| integrase/tyrosine recombinase [Burkholderia multivorans ATCC 17616] ref|YP_002230103.1| putative phage-related integrase [Burkholderia cenocepacia J2315] gb|ABO55758.1| phage integrase family protein [Burkholderia vietnamiensis G4] gb|ABX14341.1| integrase family protein [Burkholderia multivorans ATCC 17616] dbj|BAG44504.1| integrase / tyrosine recombinase [Burkholderia multivorans ATCC 17616] emb|CAR51256.1| putative phage-related integrase [Burkholderia cenocepacia J2315] Length = 456 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 152/481 (31%), Positives = 235/481 (48%), Gaps = 60/481 (12%) Query: 32 KAPRLYRNRCGVFYFRLKTAQQDRKVSLRTKCPVTANIVALQLNAVIERNRAMNKNSNNP 91 K PRLY++R GV+Y R+ ++ + SL TK A I AL LN + AMN Sbjct: 3 KLPRLYQSRHGVYYLRIIRNKKKYRWSLGTKDFHRARIHALDLNMKL----AMN------ 52 Query: 92 NIGDFNFNLDDLKTYEIE--------FRGAKIKAEGPEDHARAMEALKQMEAVLP---EE 140 +F+L +K ++E FR K P D + ++++ + P + Sbjct: 53 -----DFDLSKIKKLDVEVAPNGAVSFRDVK-----PADVDIVSQIIEKL-GLTPTQFSQ 101 Query: 141 VSPA--VQKLASDEQ-----ALLAQVVAHAQQ-----RQSPKVSKVAAEWIMERRLKNSA 188 +SPA KLA + Q A L V Q ++S S V ++ E+++ N A Sbjct: 102 LSPAELASKLAGNPQPPNLGASLGNVPNGLPQGPRATQKSELFSTVVTLYLTEKKIDNVA 161 Query: 189 RTVDAKEYHFKDFTERALKGKNPEINELDKSDIVAYKSALLKKGQAAKTIDNKLLSIADF 248 +T+ KE + +F ++ G + ++N+ VAYK+ LL G +A I+ K + Sbjct: 162 KTLYDKERVYDEF--KSFFG-DLDVNQYSPDQAVAYKNRLLALGGSASAINAKTSFLRSL 218 Query: 249 FEYALNQGTYTRHNTNPVSGLYVLTKKERVKQTESYEPFSKEDLTVLFEPLAYKTKMNAP 308 FEYA+N + NP + + TK + KQ SY+PF +DL ++FE L Y+ + P Sbjct: 219 FEYAINNNLF--FTANPFERVKISTKAKLKKQVRSYKPFEDDDLKIIFEELKYRAFLKKP 276 Query: 309 DLFWGPLLGIYTGMRISEATQIRCKDVIQAENGVHYIYVYR--SKTSNGIRKVPICDALI 366 D W P L +YTG R+ E +R D I +GV + +K SN +RK+P+ D ++ Sbjct: 277 DYHWLPFLSLYTGARVEELASLRL-DQITKVDGVLVFDIQHDAAKNSNSVRKIPLPDVIL 335 Query: 367 QLGFLDYVEEVRQAGAERIFPHRSFVNGSYSKRLSEEHLKYLKARKIKTPDDHKSFHSFR 426 + FLDYVE+V+ A +FPH +SK +S +YL +IK DD K FHSFR Sbjct: 336 KSKFLDYVEQVKATKATHLFPHLKDGKNGFSKNMSRRFGEYLDKLEIK--DDRKVFHSFR 393 Query: 427 VNVITQLANNGISATLASRIVGHGTEKGMDV---HL-GYVRDLPN--LKQVVDSLIWPLD 480 I + N + + IVGH + +D H Y +D P LK+ +D L +P+ Sbjct: 394 TTFINSMTNLNVHPAILMAIVGHYEQGKVDFSSPHFTNYQQDKPMKILKEAMDKLTYPIK 453 Query: 481 I 481 I Sbjct: 454 I 454 >ref|ZP_04888236.1| putative phage-related integrase [Burkholderia pseudomallei 1655] gb|EDU09220.1| putative phage-related integrase [Burkholderia pseudomallei 1655] Length = 439 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 138/464 (29%), Positives = 227/464 (48%), Gaps = 47/464 (10%) Query: 32 KAPRLYRNRCGVFYFRLKTAQQDRKVSLRTKCPVTANIVALQLNAVIERNRAMNKNSNNP 91 K P LY++R GV+Y R+ Q+ + SL TK A + AL LN +E +++ Sbjct: 3 KLPHLYQSRHGVYYLRVYHNNQETRRSLGTKDFRQAKLSALLLNVHVEMSKS-------- 54 Query: 92 NIGDFNFNLDDLKTYEIEF-RGAKIKAEGPEDHARAMEALKQMEAVLPEEVSPAVQKLAS 150 + + + +I G K+ PED + L +++ ++LA+ Sbjct: 55 -----RLDAEMFRHLDIALPNGVKLTNIQPEDKGILFDIL--------DKLGVTGEQLAA 101 Query: 151 DEQALLAQVVA--HAQQRQSPK-----VSKVAAEWIMERRLKNSARTVDAKEYHFKDFTE 203 +A+++A Q+ +SPK +S V A ++ E++L N A+T+D KE + +F Sbjct: 102 MPTTEVAKLLAGPEPQRMESPKPKSKPLSDVIALYLTEKKLDNVAKTLDDKERTYAEF-- 159 Query: 204 RALKG--KNPEINELDKSDIVAYKSALLKKGQAAKTIDNKLLSIADFFEYALNQGTYTRH 261 +G ++ +IN +AYK+ LL +A I+ K + D F YA++ Y Sbjct: 160 ---QGFFQDSDINAFGADTAIAYKNRLLAANASASRINAKTSFLRDLFAYAIDNNLY--F 214 Query: 262 NTNPVSGLYVLTKKERVKQTESYEPFSKEDLTVLFEPLAYKTKMNAPDLFWGPLLGIYTG 321 TNP + V +K + ++ E Y F+ +DL ++F+ +Y+ + PD W P L +YTG Sbjct: 215 ATNPFEKVRVSSKTKLKQRVEPYREFTDDDLKLIFDETSYRGYLRKPDYHWLPFLSLYTG 274 Query: 322 MRISEATQIRCKDVIQAENGVHYIYVYRSKTSNGIRKVPICDALIQLGFLDYVEEVRQAG 381 R+ E +R D I+ + G+HY + ++K N IRKVP+ + GFL YVE++R Sbjct: 275 ARVEELACLRL-DQIKKDGGLHYFEIEKAKNRNSIRKVPMHREIEASGFLAYVEDLRAKN 333 Query: 382 AERIFPHRSFVNGSYSKRLSEEHLKYLKARKIKTPDDHKSFHSFRVNVITQLANNGISAT 441 A +FPH YSK +S YL +K PD K FHS R IT+L + Sbjct: 334 ATMLFPHLKPGKNGYSKNMSRRFGDYLDV--LKVPDKRKVFHSLRHTFITRLTEMNVHPV 391 Query: 442 LASRIVGHGTEKGMD------VHLGYVRDLPNLKQVVDSLIWPL 479 + +VGH + +D V+ + + L LKQ +D L P+ Sbjct: 392 MLMALVGHYEQAKVDFSSPHVVNYQHEKPLSVLKQTIDRLELPI 435