BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0090.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773499.1| ornithine cyclodeaminase [Herbaspirillum ser... 350 1e-94 ref|YP_373701.1| ornithine cyclodeaminase [Burkholderia sp. 383]... 331 8e-89 ref|YP_784992.1| ornithine cyclodeaminase [Bordetella avium 197N... 322 3e-86 ref|ZP_02892754.1| Ornithine cyclodeaminase [Burkholderia ambifa... 320 2e-85 ref|YP_001810175.1| ornithine cyclodeaminase [Burkholderia ambif... 320 2e-85 >ref|YP_003773499.1| ornithine cyclodeaminase [Herbaspirillum seropedicae SmR1] gb|ADJ61591.1| ornithine cyclodeaminase protein [Herbaspirillum seropedicae SmR1] Length = 347 Score = 350 bits (897), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 174/236 (73%), Positives = 199/236 (84%) Query: 1 LLSELTLTTALRTAATSVLAARHMARPDSRVMALIGNGAQSEFQAIAFHRLLGIDELRVF 60 LLSELTLTTALRTAATSVLAAR MAR DSRVMA+IGNGAQSEFQ +AFH +GI+ +R++ Sbjct: 101 LLSELTLTTALRTAATSVLAARQMARSDSRVMAVIGNGAQSEFQILAFHHQMGIEVVRLY 160 Query: 61 DVDAAATDKLCRNLGAYPDLRIVRAGSVDEAVRGADIVTTVTADKRRAVIVTADMVEAGM 120 D D AAT +L RNL A L+++ S EAVRGADIVTT+TADKRRA I++ M+EAGM Sbjct: 161 DTDPAATARLMRNLRACSGLQLIPCASAAEAVRGADIVTTLTADKRRACIISPAMLEAGM 220 Query: 121 HLNAVGGDCPGKTELQREVLSRARVVVEFEPQSRVEGELQQMPAEFAVTELWQVLAGAAS 180 HLNAVGGDCPGKTEL +VL ARVVVEF PQSR+EGE+QQMPA+F VTELWQVLAG A Sbjct: 221 HLNAVGGDCPGKTELHADVLKAARVVVEFAPQSRIEGEVQQMPADFPVTELWQVLAGHAP 280 Query: 181 GRVGDDEVTVFDSVGFALEDFSALRYLDEQLDARFTQQIDLVPDLADPKDLYGAAV 236 GR EVTVFDSVGFALEDF+ALRYLDEQ+DARFT+Q+DL+P + DPKDLYG AV Sbjct: 281 GRSSAAEVTVFDSVGFALEDFAALRYLDEQVDARFTRQLDLIPAMDDPKDLYGLAV 336 >ref|YP_373701.1| ornithine cyclodeaminase [Burkholderia sp. 383] gb|ABB13057.1| ornithine cyclodeaminase [Burkholderia sp. 383] Length = 358 Score = 331 bits (848), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 165/241 (68%), Positives = 194/241 (80%), Gaps = 1/241 (0%) Query: 1 LLSELTLTTALRTAATSVLAARHMARPDSRVMALIGNGAQSEFQAIAFHRLLGIDELRVF 60 LLSE+TLTTA+RTAATS L AR +AR D+R MALIGNGAQSEFQAIAF +LGIDELRVF Sbjct: 101 LLSEMTLTTAIRTAATSALVARFLARADARSMALIGNGAQSEFQAIAFREMLGIDELRVF 160 Query: 61 DVDAAATDKLCRNLGAYPDLRIVRAGSVDEAVRGADIVTTVTADKRRAVIVTADMVEAGM 120 D+D AATDKL RNL + LR++R GS EAVRGADIVTTVTADK A I+T DM+E GM Sbjct: 161 DIDPAATDKLIRNLAPFTALRVIRCGSAAEAVRGADIVTTVTADKTNATILTPDMIEDGM 220 Query: 121 HLNAVGGDCPGKTELQREVLSRARVVVEFEPQSRVEGELQQMPAEFAVTELWQVLAGAAS 180 H+NAVGGDCPGKTEL +VL RARVVVE+EPQ+R+EG++QQMPA+F V E +++AGA Sbjct: 221 HVNAVGGDCPGKTELHADVLRRARVVVEYEPQTRIEGDIQQMPADFPVIEFARIVAGAEP 280 Query: 181 GRVGDDEVTVFDSVGFALEDFSALRYLDEQLDAR-FTQQIDLVPDLADPKDLYGAAVKGE 239 GR D +VTVFDSVGFALEDFSALRYL+ R ++DL+P DPKDLYG A +GE Sbjct: 281 GRESDAQVTVFDSVGFALEDFSALRYLNAAAREREIGIELDLIPAPRDPKDLYGVATRGE 340 Query: 240 S 240 + Sbjct: 341 N 341 >ref|YP_784992.1| ornithine cyclodeaminase [Bordetella avium 197N] emb|CAJ48063.1| ornithine cyclodeaminase [Bordetella avium 197N] Length = 349 Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 159/239 (66%), Positives = 191/239 (79%), Gaps = 1/239 (0%) Query: 1 LLSELTLTTALRTAATSVLAARHMARPDSRVMALIGNGAQSEFQAIAFHRLLGIDELRVF 60 LLSELTL TALRT ATS++AAR +ARPDSRVMALIGNGAQSEFQA+AFH LGI+ELRV+ Sbjct: 103 LLSELTLATALRTCATSLMAARALARPDSRVMALIGNGAQSEFQALAFHCHLGIEELRVY 162 Query: 61 DVDAAATDKLCRNLGAYPDLRIVRAGSVDEAVRGADIVTTVTADKRRAVIVTADMVEAGM 120 D+D AT+KL RNL +PDL+IVRA S EAVRGADIVTTVTADK A I+T DM+E GM Sbjct: 163 DIDPQATEKLIRNLAGFPDLKIVRAASTAEAVRGADIVTTVTADKAYATIITPDMLEPGM 222 Query: 121 HLNAVGGDCPGKTELQREVLSRARVVVEFEPQSRVEGELQQMPAEFAVTELWQVLAGAAS 180 HLN VGGDCPGKTEL +VL A V VE+EPQ+R+EG++QQ+PA+F V +LW+VLAG + Sbjct: 223 HLNGVGGDCPGKTELHADVLRAATVFVEYEPQTRIEGDIQQLPADFPVKDLWRVLAGHLT 282 Query: 181 GRVGDDEVTVFDSVGFALEDFSALRY-LDEQLDARFTQQIDLVPDLADPKDLYGAAVKG 238 GR E+TVFDSVGFALED+S LRY L + L+ + + LVP+ ADPKDL+ +G Sbjct: 283 GRQDAKEITVFDSVGFALEDYSVLRYVLAKSLEHHIGKTVQLVPEAADPKDLFCHTGQG 341 >ref|ZP_02892754.1| Ornithine cyclodeaminase [Burkholderia ambifaria IOP40-10] gb|EDT01668.1| Ornithine cyclodeaminase [Burkholderia ambifaria IOP40-10] Length = 359 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 164/224 (73%), Positives = 182/224 (81%), Gaps = 5/224 (2%) Query: 12 RTAATSVLAARHMARPDSRVMALIGNGAQSEFQAIAFHRLLGIDELRVFDVDAAATDKLC 71 RTAATSVLAA+ +ARPDSR MALIGNGAQSEFQAIAFH LLGI+E+RVFDVD ATDKL Sbjct: 112 RTAATSVLAAQALARPDSRTMALIGNGAQSEFQAIAFHTLLGIEEIRVFDVDPLATDKLA 171 Query: 72 RNLGAYPDLRIVRAGSVDEAVRGADIVTTVTADKRRAVIVTADMVEAGMHLNAVGGDCPG 131 RNL AYP LRIVRA S AVRGADIVTTVTADK A IVTADM+E GMHLNAVGGDCPG Sbjct: 172 RNLAAYPALRIVRAASTAHAVRGADIVTTVTADKAYATIVTADMIEPGMHLNAVGGDCPG 231 Query: 132 KTELQREVLSRARVVVEFEPQSRVEGELQQMPAEFAVTELWQVLAGAASGRVGDDEVTVF 191 KTEL+ VL RV VEFEPQSR+EGE+QQMPA+F VTELW+VL G +GR DEVTVF Sbjct: 232 KTELEAGVLQAGRVFVEFEPQSRIEGEIQQMPADFPVTELWRVLQGETTGRERADEVTVF 291 Query: 192 DSVGFALEDFSALRY---LDEQLDARFTQQIDLVPDLADPKDLY 232 DSVGFALED+SALRY L +Q +A +I L+P DPK+L+ Sbjct: 292 DSVGFALEDYSALRYLYALAQQHNAGV--EIALIPPAVDPKNLF 333 >ref|YP_001810175.1| ornithine cyclodeaminase [Burkholderia ambifaria MC40-6] gb|ACB65959.1| Ornithine cyclodeaminase [Burkholderia ambifaria MC40-6] Length = 359 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 165/224 (73%), Positives = 183/224 (81%), Gaps = 5/224 (2%) Query: 12 RTAATSVLAARHMARPDSRVMALIGNGAQSEFQAIAFHRLLGIDELRVFDVDAAATDKLC 71 RTAATSVLAA+ +ARPDSR MALIGNGAQSEFQAIAFH LLGI+E+RVFDVD ATDKL Sbjct: 112 RTAATSVLAAQALARPDSRTMALIGNGAQSEFQAIAFHTLLGIEEIRVFDVDPLATDKLV 171 Query: 72 RNLGAYPDLRIVRAGSVDEAVRGADIVTTVTADKRRAVIVTADMVEAGMHLNAVGGDCPG 131 +NL AYP LRIVRA S +AVRGADIVTTVTADK A IVTADM+E GMHLNAVGGDCPG Sbjct: 172 QNLAAYPALRIVRAASTADAVRGADIVTTVTADKAYATIVTADMIEPGMHLNAVGGDCPG 231 Query: 132 KTELQREVLSRARVVVEFEPQSRVEGELQQMPAEFAVTELWQVLAGAASGRVGDDEVTVF 191 KTEL+ VL RV VEFEPQSRVEGE+QQMPA+F VTELW+VL G SGR DEVTVF Sbjct: 232 KTELEAGVLQAGRVFVEFEPQSRVEGEIQQMPADFPVTELWRVLQGETSGRERADEVTVF 291 Query: 192 DSVGFALEDFSALRY---LDEQLDARFTQQIDLVPDLADPKDLY 232 DSVGFALED+SALRY L +Q +A +I L+P DPK+L+ Sbjct: 292 DSVGFALEDYSALRYLYALAQQHNAGV--EIALIPPAVDPKNLF 333