BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0080.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775741.1| hypothetical protein Hsero_2334 [Herbaspiril...   153   9e-36
ref|YP_980781.1| helix-turn-helix domain-containing protein [Pol...   132   1e-29
ref|YP_001566803.1| XRE family transcriptional regulator [Delfti...   128   3e-28
ref|YP_004154993.1| XRE family transcriptional regulator [Variov...    99   2e-19
ref|YP_001354227.1| hypothetical protein mma_2537 [Janthinobacte...    98   3e-19

>ref|YP_003775741.1| hypothetical protein Hsero_2334 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63833.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 105

 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 84/103 (81%)

Query: 9   KPPKSEPTESSDNLPSPLVQSFGIGVRQLREAQGWSQERLAENSNLNRSYIGEIERGCAI 68
           KP +       + L S LVQSFGIGVRQLR A+GWSQERLAENSNLNRSYIGEIERG AI
Sbjct: 3   KPVRPARQADVEALSSALVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAI 62

Query: 69  ASLVTVEKLAVALKLTPSALVTRGEAISQMNLVRGIKLMAIAC 111
           ASLVTVEKLA AL L+PSALVT GE I Q NLVRG++LMAIAC
Sbjct: 63  ASLVTVEKLATALTLSPSALVTHGERIHQQNLVRGLQLMAIAC 105


>ref|YP_980781.1| helix-turn-helix domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gb|ABM35860.1| helix-turn-helix domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 90

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 77/86 (89%)

Query: 26  LVQSFGIGVRQLREAQGWSQERLAENSNLNRSYIGEIERGCAIASLVTVEKLAVALKLTP 85
           LV+ FGI +RQ REA+ WSQE+LAE+SNLNRSY+GEIERG AIASL TVEKLA+AL ++P
Sbjct: 5   LVECFGIALRQSREARNWSQEQLAEHSNLNRSYVGEIERGSAIASLATVEKLALALGISP 64

Query: 86  SALVTRGEAISQMNLVRGIKLMAIAC 111
           SALV RGEA+SQ N+VRGI+LMAIAC
Sbjct: 65  SALVGRGEAVSQANVVRGIRLMAIAC 90


>ref|YP_001566803.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 ref|YP_004486201.1| helix-turn-helix domain-containing protein [Delftia sp. Cs1-4]
 gb|ABX38418.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
 gb|AEF87846.1| helix-turn-helix domain protein [Delftia sp. Cs1-4]
          Length = 90

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 74/90 (82%)

Query: 22  LPSPLVQSFGIGVRQLREAQGWSQERLAENSNLNRSYIGEIERGCAIASLVTVEKLAVAL 81
           + + LV SFGI VRQ REA GWSQERLAE+S+LNRSY+GEIERG  IASL+TVEKLAV+L
Sbjct: 1   MSTRLVTSFGIAVRQAREAHGWSQERLAEHSDLNRSYVGEIERGRVIASLLTVEKLAVSL 60

Query: 82  KLTPSALVTRGEAISQMNLVRGIKLMAIAC 111
            + PSALV RGE ++   LVRG++L AIAC
Sbjct: 61  GVQPSALVMRGETVAHDQLVRGLRLAAIAC 90


>ref|YP_004154993.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gb|ADU36882.1| helix-turn-helix domain protein [Variovorax paradoxus EPS]
          Length = 89

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 61/87 (70%)

Query: 25  PLVQSFGIGVRQLREAQGWSQERLAENSNLNRSYIGEIERGCAIASLVTVEKLAVALKLT 84
             V+ FG+ VRQLREA GWSQE+LAE S+LNRSY+GE+ERG  I S+VT +KLA AL + 
Sbjct: 3   AFVEDFGVTVRQLREANGWSQEQLAERSDLNRSYVGEVERGRVIPSIVTAQKLATALGIN 62

Query: 85  PSALVTRGEAISQMNLVRGIKLMAIAC 111
              L+ R E + Q  L R I L AIAC
Sbjct: 63  IVNLLARCEQLEQSRLARRINLAAIAC 89


>ref|YP_001354227.1| hypothetical protein mma_2537 [Janthinobacterium sp. Marseille]
 gb|ABR91133.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 109

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 65/101 (64%)

Query: 11  PKSEPTESSDNLPSPLVQSFGIGVRQLREAQGWSQERLAENSNLNRSYIGEIERGCAIAS 70
           P  +P   +    S L  S G+ VRQLREAQGWSQE LAE + LNRSY+GE+ERG  I S
Sbjct: 9   PGYKPDRLTGYAMSKLCVSLGLAVRQLREAQGWSQEALAEKAQLNRSYVGEVERGKTIPS 68

Query: 71  LVTVEKLAVALKLTPSALVTRGEAISQMNLVRGIKLMAIAC 111
           L+T++KLA AL L  S L+   E IS +  V  + L AIAC
Sbjct: 69  LITLDKLASALGLKVSDLLLHCERISGLQAVYKLNLAAIAC 109