BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0071.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EFV84856.1| GntR family Transcriptional regulator [Achromobac... 234 1e-59 gb|EGP45990.1| GntR family transcriptional regulator [Achromobac... 233 3e-59 ref|YP_002944762.1| GntR family transcriptional regulator [Vario... 228 8e-58 ref|YP_550769.1| GntR family transcriptional regulator [Polaromo... 217 2e-54 ref|ZP_06685597.1| FadR family transcriptional regulator [Achrom... 216 2e-54 >gb|EFV84856.1| GntR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 242 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 122/222 (54%), Positives = 155/222 (69%), Gaps = 4/222 (1%) Query: 17 RLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEVRGG 76 R Y +A +IQA + + A G+RLP+ER LA + VSR S+REA+IALEL GV+EVRGG Sbjct: 20 RAYLRLAAQIQALVAQGEFAVGKRLPAERALAERFDVSRTSLREAIIALELQGVVEVRGG 79 Query: 77 SGIYVIEKK-GAA--PAIQEIGPGPFEILSARCLIEGEVAAIAARMATDGALDAILRALN 133 SGIYV E K G A PA QE G GPFE+L ARCL+E E+AA+AA D LD I AL Sbjct: 80 SGIYVCEPKPGVARLPAAQEPGAGPFELLRARCLVESEIAALAATTRNDADLDRIFEALT 139 Query: 134 DMERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQ-RGRLWIKMEEHFHTEEL 192 M + N+EADR FHL IA++TGNS L+ + +WDQ +G +W K+E+HFHT+EL Sbjct: 140 TMREQMMHKEENQEADRRFHLYIAQSTGNSVLLGTVTAMWDQAQGPIWEKIEQHFHTQEL 199 Query: 193 RQQTLVDHRRILEAIVDRDPEGARKAMHAHLERVTTEFSRGW 234 RQ + DH+RI A+V RD +GAR+AM HLERV EF++GW Sbjct: 200 RQASQEDHQRIFSALVARDADGARQAMRNHLERVIGEFAQGW 241 >gb|EGP45990.1| GntR family transcriptional regulator [Achromobacter xylosoxidans AXX-A] Length = 242 Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 121/222 (54%), Positives = 155/222 (69%), Gaps = 4/222 (1%) Query: 17 RLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEVRGG 76 R Y +A +IQA + + A G+RLP+ER LA + VSR S+REA+IALEL GV+EVRGG Sbjct: 20 RAYLRLAAQIQALVAQGEFAVGKRLPAERALAERFDVSRTSLREAIIALELQGVVEVRGG 79 Query: 77 SGIYVIEKK-GAA--PAIQEIGPGPFEILSARCLIEGEVAAIAARMATDGALDAILRALN 133 SGIYV E + G A PA QE G GPFE+L ARCL+E E+AA+AA D LD I AL Sbjct: 80 SGIYVCEPRPGVARLPAAQEPGAGPFELLRARCLVESEIAALAASTRNDADLDRIFEALT 139 Query: 134 DMERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQ-RGRLWIKMEEHFHTEEL 192 M + N+EADR FHL IA++TGNS L+ + +WDQ +G +W K+E+HFHT+EL Sbjct: 140 TMREQMMHKEENQEADRRFHLYIAQSTGNSVLLGTVTAMWDQAQGPIWEKIEQHFHTQEL 199 Query: 193 RQQTLVDHRRILEAIVDRDPEGARKAMHAHLERVTTEFSRGW 234 RQ + DH+RI A+V RD +GAR+AM HLERV EF++GW Sbjct: 200 RQASQEDHQRIFSALVARDADGARQAMRNHLERVIGEFAQGW 241 >ref|YP_002944762.1| GntR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS19496.1| GntR domain protein [Variovorax paradoxus S110] Length = 245 Score = 228 bits (580), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 115/225 (51%), Positives = 149/225 (66%), Gaps = 4/225 (1%) Query: 14 PETRLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEV 73 P + Y+ +A I +++ G+RLPSER LA + VSR SVREA+IALEL GV+EV Sbjct: 20 PMEKPYQRLAANIHELVKQGEFLVGQRLPSERALAERFDVSRTSVREAIIALELQGVVEV 79 Query: 74 RGGSGIYVIEKKGAA---PAIQEIGPGPFEILSARCLIEGEVAAIAARMATDGALDAILR 130 RGGSGIY+ + + A P +QE G GPFE+L ARCLIE E+A++AA D LD + Sbjct: 80 RGGSGIYICQPQDAPTRLPVVQETGAGPFELLRARCLIESEIASLAATTRKDADLDKMFG 139 Query: 131 ALNDMERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQ-RGRLWIKMEEHFHT 189 AL M HD+ NE ADR +HL IA +TGNS L+ + NLWDQ +G +W ++E+HFH+ Sbjct: 140 ALATMREQMHDKEANEAADRMYHLHIAESTGNSVLLQTVTNLWDQAKGPIWTQIEQHFHS 199 Query: 190 EELRQQTLVDHRRILEAIVDRDPEGARKAMHAHLERVTTEFSRGW 234 LR Q+ DH+RI AIV D E AR AM AHLERV EF++ W Sbjct: 200 PALRLQSQDDHQRIFAAIVSGDAEAARLAMRAHLERVIGEFAQSW 244 >ref|YP_550769.1| GntR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE45871.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length = 245 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 139/205 (67%), Gaps = 5/205 (2%) Query: 35 IAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEVRGGSGIYVIEKKGAAPA---- 90 + AGERLPSER LA Q +VSR SVREA+IALEL G +EVRGGSG YVI+ A Sbjct: 40 VKAGERLPSERALAEQFEVSRTSVREAIIALELQGAVEVRGGSGAYVIQTPATATQTPVF 99 Query: 91 IQEIGPGPFEILSARCLIEGEVAAIAARMATDGALDAILRALNDMERFYHDRPNNEEADR 150 + E GPGPFE+L ARCLIE E+A++AA D LD I AL DM D+ NE ADR Sbjct: 100 MPEAGPGPFELLRARCLIESEIASVAAETRKDADLDRIFEALADMRLHMDDKVANEAADR 159 Query: 151 TFHLSIARATGNSALVSVIENLWDQ-RGRLWIKMEEHFHTEELRQQTLVDHRRILEAIVD 209 FHL IA +TGNS L+ ++ +WD +G +W K+++HFH+ LR + DH+R+ +A++ Sbjct: 160 RFHLYIAESTGNSVLLQMVTAMWDHAKGPVWAKIDQHFHSPALRVSSQEDHQRVFDALMA 219 Query: 210 RDPEGARKAMHAHLERVTTEFSRGW 234 RDP AR AM AHLERV EF++ W Sbjct: 220 RDPVAARTAMRAHLERVIKEFAQAW 244 >ref|ZP_06685597.1| FadR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF77443.1| FadR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 242 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 118/222 (53%), Positives = 156/222 (70%), Gaps = 4/222 (1%) Query: 17 RLYRVVADRIQAFIREEHIAAGERLPSERDLAAQLKVSRASVREALIALELTGVIEVRGG 76 R Y +A +IQA + + A G+RLP+ER LA + VSR ++REA+IALE++GV+EVRGG Sbjct: 20 RAYVRLAAQIQALVAQGEFAVGKRLPAERALAERFDVSRTALREAIIALEISGVVEVRGG 79 Query: 77 SGIYVIEKK-GAA--PAIQEIGPGPFEILSARCLIEGEVAAIAARMATDGALDAILRALN 133 SGIYV E K G A P QE G GPFE+L ARCLIE E+AA+AA D LD I AL Sbjct: 80 SGIYVCEPKPGVARLPGAQEAGAGPFELLRARCLIESEIAALAATTRNDADLDRIFEALT 139 Query: 134 DMERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQ-RGRLWIKMEEHFHTEEL 192 M D+ NEEADR FHL IA++TGNS L++ + ++WDQ +G +W K+E+HFH+++L Sbjct: 140 TMREQMMDKVANEEADRRFHLYIAQSTGNSVLLATVTSMWDQAQGPIWEKIEQHFHSQQL 199 Query: 193 RQQTLVDHRRILEAIVDRDPEGARKAMHAHLERVTTEFSRGW 234 R + DH+RI A+V D + AR+AM AHLERV EF++GW Sbjct: 200 RHASQEDHQRIFSALVAGDAQAARQAMRAHLERVIGEFAQGW 241