BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0067.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_773484.1| binding-protein-dependent transport systems inn... 239 2e-61 ref|ZP_02892239.1| binding-protein-dependent transport systems i... 239 4e-61 ref|YP_001808314.1| binding-protein-dependent transport systems ... 238 4e-61 ref|ZP_02906597.1| binding-protein-dependent transport systems i... 236 2e-60 ref|YP_001860605.1| binding-protein-dependent transport systems ... 235 5e-60 >ref|YP_773484.1| binding-protein-dependent transport systems inner membrane component [Burkholderia ambifaria AMMD] gb|ABI87150.1| carbohydrate ABC transporter membrane protein 1, CUT1 family [Burkholderia ambifaria AMMD] Length = 290 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 113/175 (64%), Positives = 142/175 (81%) Query: 4 MSSQTAGARWRDPAMWMAAPAVVFMLAVFVYPFIHGLILSFQPLEGGGMLSNYVKFFNTE 63 MS+ T GA RD W+ PA+ F++A+F+YPF +GL+LSFQP+ GGG L+NYV+FF Sbjct: 1 MSTLTTGATPRDAKAWLVTPALAFIVALFIYPFAYGLVLSFQPMNGGGALANYVQFFTDT 60 Query: 64 NLWMTIGVTLKLALPATLINILIAVPVAYRLRHKTPYQKIATTILVIPITLGTVLIAEGM 123 +W T+ VTLKLA+PATLIN+ I+VPVA+ LR +PYQK TT+LVIPITLGTVL+A+GM Sbjct: 61 AMWPTVLVTLKLAVPATLINVGISVPVAFALRRNSPYQKFVTTLLVIPITLGTVLVADGM 120 Query: 124 LTYFGPKGWFAQILQTLHIYEGAIRLTHNYAGVLISLVISGFPFAFLLILSYITG 178 LTYFGP GWF Q LQ LH+Y +RLTHNY GVL+SL++SGFPFAFLL+LSYI+G Sbjct: 121 LTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLIVSGFPFAFLLMLSYISG 175 >ref|ZP_02892239.1| binding-protein-dependent transport systems inner membrane component [Burkholderia ambifaria IOP40-10] gb|EDT02192.1| binding-protein-dependent transport systems inner membrane component [Burkholderia ambifaria IOP40-10] Length = 290 Score = 239 bits (609), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 112/175 (64%), Positives = 142/175 (81%) Query: 4 MSSQTAGARWRDPAMWMAAPAVVFMLAVFVYPFIHGLILSFQPLEGGGMLSNYVKFFNTE 63 MS+ + GA RD W+ PA+ F++A+F+YPF +GL+LSFQP+ GGG L+NYV+FF Sbjct: 1 MSTLSTGATPRDAKAWLVTPALAFIVALFIYPFAYGLVLSFQPMNGGGALANYVQFFTDT 60 Query: 64 NLWMTIGVTLKLALPATLINILIAVPVAYRLRHKTPYQKIATTILVIPITLGTVLIAEGM 123 +W T+ VTLKLA+PATLIN+ I+VPVA+ LR +PYQK TT+LVIPITLGTVL+A+GM Sbjct: 61 AMWPTVVVTLKLAVPATLINVGISVPVAFALRRNSPYQKFVTTLLVIPITLGTVLVADGM 120 Query: 124 LTYFGPKGWFAQILQTLHIYEGAIRLTHNYAGVLISLVISGFPFAFLLILSYITG 178 LTYFGP GWF Q LQ LH+Y +RLTHNY GVL+SL++SGFPFAFLL+LSYI+G Sbjct: 121 LTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLIVSGFPFAFLLMLSYISG 175 >ref|YP_001808314.1| binding-protein-dependent transport systems inner membrane component [Burkholderia ambifaria MC40-6] gb|ACB64098.1| binding-protein-dependent transport systems inner membrane component [Burkholderia ambifaria MC40-6] Length = 290 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 112/175 (64%), Positives = 142/175 (81%) Query: 4 MSSQTAGARWRDPAMWMAAPAVVFMLAVFVYPFIHGLILSFQPLEGGGMLSNYVKFFNTE 63 MS+ T GA RD W+ PA+ F++A+F+YPF +GL+LSFQP+ GGG L+NYV+FF Sbjct: 1 MSTLTTGATPRDAKAWLVTPALAFIVALFIYPFAYGLVLSFQPMNGGGALANYVQFFTDT 60 Query: 64 NLWMTIGVTLKLALPATLINILIAVPVAYRLRHKTPYQKIATTILVIPITLGTVLIAEGM 123 +W T+ VTLKLA+PATL+N+ I+VPVA+ LR +PYQK TT+LVIPITLGTVL+A+GM Sbjct: 61 AMWPTVLVTLKLAVPATLLNVGISVPVAFALRRNSPYQKFVTTLLVIPITLGTVLVADGM 120 Query: 124 LTYFGPKGWFAQILQTLHIYEGAIRLTHNYAGVLISLVISGFPFAFLLILSYITG 178 LTYFGP GWF Q LQ LH+Y +RLTHNY GVL+SL++SGFPFAFLL+LSYI+G Sbjct: 121 LTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLIVSGFPFAFLLMLSYISG 175 >ref|ZP_02906597.1| binding-protein-dependent transport systems inner membrane component [Burkholderia ambifaria MEX-5] gb|EDT42262.1| binding-protein-dependent transport systems inner membrane component [Burkholderia ambifaria MEX-5] Length = 300 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 110/175 (62%), Positives = 141/175 (80%) Query: 4 MSSQTAGARWRDPAMWMAAPAVVFMLAVFVYPFIHGLILSFQPLEGGGMLSNYVKFFNTE 63 MS+ GA RD W+ PA+ F++A+F+YPF +GL+LSFQP+ GGG L+NYV+FF Sbjct: 11 MSTLATGATPRDAKAWLVTPALAFIVALFIYPFAYGLVLSFQPMNGGGALANYVQFFTDT 70 Query: 64 NLWMTIGVTLKLALPATLINILIAVPVAYRLRHKTPYQKIATTILVIPITLGTVLIAEGM 123 +W T+ VTLKLA+PATL+N+ I+VPVA+ LR +PYQK TT+LVIP+TLGTVL+A+GM Sbjct: 71 AMWPTVLVTLKLAVPATLLNVGISVPVAFALRRNSPYQKFVTTLLVIPVTLGTVLVADGM 130 Query: 124 LTYFGPKGWFAQILQTLHIYEGAIRLTHNYAGVLISLVISGFPFAFLLILSYITG 178 LTYFGP GWF Q LQ LH+Y +RLTHNY GVL+SL++SGFPFAFLL+LSYI+G Sbjct: 131 LTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLIVSGFPFAFLLMLSYISG 185 >ref|YP_001860605.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] gb|ACC73559.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] Length = 295 Score = 235 bits (599), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 110/165 (66%), Positives = 138/165 (83%) Query: 14 RDPAMWMAAPAVVFMLAVFVYPFIHGLILSFQPLEGGGMLSNYVKFFNTENLWMTIGVTL 73 RD W+ +PA++F+LA+FVYPF++GL LSF P+EGGGM +NY KFF+ ++W TI VTL Sbjct: 16 RDGKAWLVSPALLFILALFVYPFVYGLALSFSPMEGGGMWANYAKFFSDTSMWPTIIVTL 75 Query: 74 KLALPATLINILIAVPVAYRLRHKTPYQKIATTILVIPITLGTVLIAEGMLTYFGPKGWF 133 KLA+PATLIN+ ++VPVA+ LR +PYQK TT+LVIP+TLGTVLIA+GMLTYFGP GWF Sbjct: 76 KLAVPATLINVGVSVPVAFALRRPSPYQKFVTTLLVIPVTLGTVLIADGMLTYFGPNGWF 135 Query: 134 AQILQTLHIYEGAIRLTHNYAGVLISLVISGFPFAFLLILSYITG 178 Q LQ LH+Y +RLTHN+ GVLISL++SGFPFAFLL LSY+TG Sbjct: 136 PQALQGLHLYADEVRLTHNFWGVLISLIVSGFPFAFLLTLSYVTG 180