BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0065.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002947394.1| binding-protein-dependent transport systems ... 403 e-110 ref|YP_002230872.1| binding-protein-dependent transport system i... 379 e-103 ref|YP_621088.1| binding-protein-dependent transport systems inn... 378 e-103 ref|ZP_02906598.1| binding-protein-dependent transport systems i... 378 e-103 ref|YP_773485.1| binding-protein-dependent transport systems inn... 377 e-103 >ref|YP_002947394.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS22128.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 280 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 208/270 (77%), Positives = 239/270 (88%) Query: 31 RAWSGLVVGLMTFFLINVGLMIASVATNSVAKRWLGTWLPNGWTLEWYSAAWQEFQLGDV 90 + W LV +M FF++NV LM+A+V T+SVA+RWLGTWLP+G+T WY AWQEFQL V Sbjct: 9 KLWKSLVALVMGFFIVNVALMVAAVGTSSVARRWLGTWLPDGYTFNWYQTAWQEFQLDSV 68 Query: 91 LLVTVQVVLSVVVLSILIGVPAAYTLARRNFRGKKLLTGLFLLPLMIPPITYGIPLATLM 150 L VT++VV +VV LSILIGVPAAY LARRNFRGK LL GLFLLPLMIPPITYGIPLAT+M Sbjct: 69 LWVTIEVVAAVVFLSILIGVPAAYALARRNFRGKNLLMGLFLLPLMIPPITYGIPLATVM 128 Query: 151 YELHLAGTLPGVIIANLLPALPFVILVMTPFIEQIDPNLESAARVFGARTFTMFRHVLVP 210 Y+ H+AGT+ GVI+AN++PA+PF+ILVMTPFIEQID NLESAARVFGA TF +F HVL+P Sbjct: 129 YQAHIAGTIFGVILANMIPAVPFMILVMTPFIEQIDANLESAARVFGANTFKLFWHVLLP 188 Query: 211 LLAPGILAASLLVLVRTIAMFELTFLTAGADTQTLVVALYYSVFAAGVRASQSIDAMAMV 270 LLAPGILAASLLVLVRTI MFELTFLTAG D+QTLVVALYY+VFAAGVRA QS+DAMAMV Sbjct: 189 LLAPGILAASLLVLVRTIGMFELTFLTAGPDSQTLVVALYYAVFAAGVRAPQSVDAMAMV 248 Query: 271 YMIVTLIWLLIAMRFVSPTQLVSRVKEHPQ 300 YM VTL WLLIA++FV+PTQLVSRVKEHP+ Sbjct: 249 YMAVTLAWLLIALQFVNPTQLVSRVKEHPK 278 >ref|YP_002230872.1| binding-protein-dependent transport system inner membrane protein [Burkholderia cenocepacia J2315] emb|CAR52044.1| binding-protein-dependent transport system inner membrane protein [Burkholderia cenocepacia J2315] Length = 277 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/276 (71%), Positives = 234/276 (84%) Query: 25 RSHWASRAWSGLVVGLMTFFLINVGLMIASVATNSVAKRWLGTWLPNGWTLEWYSAAWQE 84 +H A RAW LV GLM FFL+NV L+IA+VA NSVA RW GT LP G+TL WY+ AW++ Sbjct: 2 NNHLAGRAWKALVWGLMAFFLLNVMLLIATVAVNSVATRWFGTPLPQGFTLRWYAKAWED 61 Query: 85 FQLGDVLLVTVQVVLSVVVLSILIGVPAAYTLARRNFRGKKLLTGLFLLPLMIPPITYGI 144 FQL VL VTV+VV +VV+LSI +GVPAAY LAR FRGK+ +FLLPLM+PP+TYGI Sbjct: 62 FQLASVLWVTVEVVGAVVLLSIALGVPAAYALARVQFRGKRFALLVFLLPLMVPPVTYGI 121 Query: 145 PLATLMYELHLAGTLPGVIIANLLPALPFVILVMTPFIEQIDPNLESAARVFGARTFTMF 204 P+AT+MY++ LAGTLPGVI+ANL+PALPFVILVMTPFIEQIDPNLE+AAR+FGA T+ F Sbjct: 122 PMATVMYKIGLAGTLPGVILANLVPALPFVILVMTPFIEQIDPNLEAAARIFGANTWRYF 181 Query: 205 RHVLVPLLAPGILAASLLVLVRTIAMFELTFLTAGADTQTLVVALYYSVFAAGVRASQSI 264 R+VL+PLL PG+LAA LLVLVRTI MFELTF TAG TQTLVVALYY+VF+ GVRA QSI Sbjct: 182 RYVLLPLLVPGMLAAGLLVLVRTIGMFELTFFTAGPSTQTLVVALYYAVFSTGVRAPQSI 241 Query: 265 DAMAMVYMIVTLIWLLIAMRFVSPTQLVSRVKEHPQ 300 DAMAM+YM +TL+W++IA++FVSPTQLVSRVK+ Q Sbjct: 242 DAMAMIYMAITLVWVVIALQFVSPTQLVSRVKQERQ 277 >ref|YP_621088.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia AU 1054] ref|YP_835332.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia HI2424] ref|YP_001764954.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia MC0-3] ref|ZP_04938748.1| Binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia PC184] gb|ABF76115.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia AU 1054] gb|ABK08439.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia HI2424] gb|EAY61919.1| Binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia PC184] gb|ACA90832.1| binding-protein-dependent transport systems inner membrane component [Burkholderia cenocepacia MC0-3] Length = 307 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/284 (69%), Positives = 239/284 (84%), Gaps = 1/284 (0%) Query: 17 SRQPAPKRRSHWASRAWSGLVVGLMTFFLINVGLMIASVATNSVAKRWLGTWLPNGWTLE 76 +R+P + +S+ A RAW LV GLM FFL+NV L+IA+VA NSVA RW GT LP G+TL Sbjct: 25 ARKPH-RMKSNLAGRAWKALVWGLMAFFLLNVMLLIATVAVNSVATRWFGTPLPQGFTLH 83 Query: 77 WYSAAWQEFQLGDVLLVTVQVVLSVVVLSILIGVPAAYTLARRNFRGKKLLTGLFLLPLM 136 WY+ AW +FQL VL VTV+VV +VV+LSI +GVPAAY LAR FRGK+ +FLLPLM Sbjct: 84 WYAKAWDDFQLASVLWVTVEVVGAVVLLSIALGVPAAYALARVQFRGKRFALLVFLLPLM 143 Query: 137 IPPITYGIPLATLMYELHLAGTLPGVIIANLLPALPFVILVMTPFIEQIDPNLESAARVF 196 +PP+TYGIP+AT+MY++ LAGTLPGVI+ANL+PALPFVILVMTPFIEQIDPNLE+AAR+F Sbjct: 144 VPPVTYGIPMATVMYKIGLAGTLPGVILANLVPALPFVILVMTPFIEQIDPNLEAAARIF 203 Query: 197 GARTFTMFRHVLVPLLAPGILAASLLVLVRTIAMFELTFLTAGADTQTLVVALYYSVFAA 256 GA T+ FR+VL+PLL PG+LAA LLVLVRTI MFELTF TAG TQTLVVALYY+VF+ Sbjct: 204 GANTWRYFRYVLLPLLVPGMLAAGLLVLVRTIGMFELTFFTAGPSTQTLVVALYYAVFST 263 Query: 257 GVRASQSIDAMAMVYMIVTLIWLLIAMRFVSPTQLVSRVKEHPQ 300 GVRA QSIDAMAM+YM +TL+W++IA++FVSPTQLVSRVK+ Q Sbjct: 264 GVRAPQSIDAMAMIYMAITLVWVVIALQFVSPTQLVSRVKQERQ 307 >ref|ZP_02906598.1| binding-protein-dependent transport systems inner membrane component [Burkholderia ambifaria MEX-5] gb|EDT42263.1| binding-protein-dependent transport systems inner membrane component [Burkholderia ambifaria MEX-5] Length = 307 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/284 (70%), Positives = 239/284 (84%), Gaps = 1/284 (0%) Query: 17 SRQPAPKRRSHWASRAWSGLVVGLMTFFLINVGLMIASVATNSVAKRWLGTWLPNGWTLE 76 +R P K RS+ A RAW LV GLM FFL+NV L+IA+VA NSVA RW GT LP G+TL Sbjct: 25 ARAPQ-KMRSNLAGRAWKALVWGLMAFFLLNVMLLIATVAVNSVATRWFGTPLPQGFTLH 83 Query: 77 WYSAAWQEFQLGDVLLVTVQVVLSVVVLSILIGVPAAYTLARRNFRGKKLLTGLFLLPLM 136 WY+ AW++FQL VL VTV+VV +VV+LS+ +GVPAAY LAR FRGK+ +FLLPLM Sbjct: 84 WYAKAWEDFQLASVLWVTVEVVGAVVLLSVALGVPAAYALARVRFRGKRFALLVFLLPLM 143 Query: 137 IPPITYGIPLATLMYELHLAGTLPGVIIANLLPALPFVILVMTPFIEQIDPNLESAARVF 196 +PP+TYGIP+AT+MY++ LAGTL GVI+ANL+PALPFVILVMTPFIEQIDPNLE+AAR+F Sbjct: 144 VPPVTYGIPMATVMYKVGLAGTLSGVILANLVPALPFVILVMTPFIEQIDPNLEAAARIF 203 Query: 197 GARTFTMFRHVLVPLLAPGILAASLLVLVRTIAMFELTFLTAGADTQTLVVALYYSVFAA 256 GA T+ FR+VL+PLL PG+LAA+LLVLVRTI MFELTF TAG TQTLVVALYY+VF+ Sbjct: 204 GANTWRYFRYVLLPLLVPGMLAAALLVLVRTIGMFELTFFTAGPSTQTLVVALYYAVFST 263 Query: 257 GVRASQSIDAMAMVYMIVTLIWLLIAMRFVSPTQLVSRVKEHPQ 300 GVRA QSIDAMAM+YM +TLIW++IA++FVSPTQLVSRVK+ Q Sbjct: 264 GVRAPQSIDAMAMIYMAITLIWVVIALQFVSPTQLVSRVKQERQ 307 >ref|YP_773485.1| binding-protein-dependent transport systems inner membrane component [Burkholderia ambifaria AMMD] gb|ABI87151.1| binding-protein-dependent transport systems inner membrane component [Burkholderia ambifaria AMMD] Length = 307 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/284 (70%), Positives = 239/284 (84%), Gaps = 1/284 (0%) Query: 17 SRQPAPKRRSHWASRAWSGLVVGLMTFFLINVGLMIASVATNSVAKRWLGTWLPNGWTLE 76 +R P K RS+ A RAW LV GLM FFL+NV L+IA+VA NSVA RW GT LP G+TL Sbjct: 25 ARTPQ-KMRSNLAGRAWKALVWGLMAFFLLNVMLLIATVAVNSVATRWFGTPLPQGFTLH 83 Query: 77 WYSAAWQEFQLGDVLLVTVQVVLSVVVLSILIGVPAAYTLARRNFRGKKLLTGLFLLPLM 136 WY+ AW++FQL VL VTV+VV +VV+LS+ +GVPAAY LAR FRGK+ +FLLPLM Sbjct: 84 WYAKAWEDFQLASVLWVTVEVVGAVVLLSVALGVPAAYALARVRFRGKRFALLVFLLPLM 143 Query: 137 IPPITYGIPLATLMYELHLAGTLPGVIIANLLPALPFVILVMTPFIEQIDPNLESAARVF 196 +PP+TYGIP+AT+MY++ LAGTL GVI+ANL+PALPFVILVMTPFIEQIDPNLE+AAR+F Sbjct: 144 VPPVTYGIPMATVMYKVGLAGTLSGVILANLVPALPFVILVMTPFIEQIDPNLEAAARIF 203 Query: 197 GARTFTMFRHVLVPLLAPGILAASLLVLVRTIAMFELTFLTAGADTQTLVVALYYSVFAA 256 GA T+ FR+VL+PLL PG+LAA+LLVLVRTI MFELTF TAG TQTLVVALYY+VF+ Sbjct: 204 GANTWRYFRYVLLPLLVPGMLAAALLVLVRTIGMFELTFFTAGPSTQTLVVALYYAVFST 263 Query: 257 GVRASQSIDAMAMVYMIVTLIWLLIAMRFVSPTQLVSRVKEHPQ 300 GVRA QSIDAMAM+YM +TLIW++IA++FVSPTQLVSRVK+ Q Sbjct: 264 GVRAPQSIDAMAMIYMAITLIWVVIALQFVSPTQLVSRVKQERQ 307