BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0060.p (289 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003694667.1| AraC family transcriptional regulator [Stark... 424 e-117 ref|YP_001188699.1| AraC family transcriptional regulator [Pseud... 373 e-101 ref|YP_004381286.1| AraC family transcriptional regulator [Pseud... 371 e-101 ref|YP_002129849.1| transcriptional regulator, AraC type [Phenyl... 361 9e-98 ref|YP_914869.1| AraC-like transcriptional regulator [Paracoccus... 347 1e-93 >ref|YP_003694667.1| AraC family transcriptional regulator [Starkeya novella DSM 506] gb|ADH90048.1| transcriptional regulator, AraC family [Starkeya novella DSM 506] Length = 294 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 213/287 (74%), Positives = 241/287 (83%) Query: 1 VQRYADAHAGRDGLAHTPIAGLTIVRATEVSELLYAISRPLVCLVLQGGKRVAMGAQAFA 60 V+R+A AHA +G+A TPI GLT VRA S L+YAISRPL CLV+QG K+V +G QAF Sbjct: 8 VRRHALAHADANGIAPTPIPGLTTVRAIAPSGLVYAISRPLACLVVQGAKQVTLGTQAFP 67 Query: 61 FSAGDSLLITADVPTVSQITHASLAAPYLSLVLELDPAVIADLAMQMEAAPASAQAPVRV 120 FSAGDSLLITADVPTVSQIT AS APYLSLVLELDPAV+A+L +M+AAP APVRV Sbjct: 68 FSAGDSLLITADVPTVSQITRASSGAPYLSLVLELDPAVVAELVAEMKAAPVGDVAPVRV 127 Query: 121 DPTDAEVADAALRLMRLLDRPAALPVLQTQLTRELHYWLLAGKHGAAIRNLGWPDSQARR 180 +PTDAEVADAALRLMRLLDRPA++PVLQ QL RE+HYWLL G+HG AIR LGWPDS A+R Sbjct: 128 EPTDAEVADAALRLMRLLDRPASVPVLQAQLVREMHYWLLTGRHGPAIRRLGWPDSHAQR 187 Query: 181 VARAVEVLRTDFAQALPVERLAAVAGMSPSSFHQHFRSVTSLSPLQFQKQLRLIEARRLM 240 V +AV VLRT+FA+ L VE LA VAGMSPSSFHQHFRSVTSLSPLQFQKQLRLIEARRLM Sbjct: 188 VGKAVAVLRTEFARPLRVEHLAGVAGMSPSSFHQHFRSVTSLSPLQFQKQLRLIEARRLM 247 Query: 241 LTDGVSASSAAFAVGYESVPQFTREYGRMFGLPPAKDTEEAKSKVRA 287 +G++AS AAF VGYESVPQFTREYGR+FGLPP +D A+ +V A Sbjct: 248 QAEGLAASRAAFEVGYESVPQFTREYGRLFGLPPVRDARAARGEVAA 294 >ref|YP_001188699.1| AraC family transcriptional regulator [Pseudomonas mendocina ymp] gb|ABP85967.1| transcriptional regulator, AraC family [Pseudomonas mendocina ymp] Length = 290 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 193/281 (68%), Positives = 225/281 (80%) Query: 1 VQRYADAHAGRDGLAHTPIAGLTIVRATEVSELLYAISRPLVCLVLQGGKRVAMGAQAFA 60 V+ Y D+ DG+A PIAGLTI+RA + S L +AI+RPLVCLVLQG KRV MG F Sbjct: 9 VRGYIDSRTAADGMALAPIAGLTIIRALQPSGLDHAITRPLVCLVLQGRKRVMMGTDIFT 68 Query: 61 FSAGDSLLITADVPTVSQITHASLAAPYLSLVLELDPAVIADLAMQMEAAPASAQAPVRV 120 F AGDSLLITADVPTVSQIT AS APY+SLV++LDPA++ +L +M+A P + AP+R+ Sbjct: 69 FGAGDSLLITADVPTVSQITEASGEAPYISLVIDLDPALLTELMEEMKAVPVTDAAPIRI 128 Query: 121 DPTDAEVADAALRLMRLLDRPAALPVLQTQLTRELHYWLLAGKHGAAIRNLGWPDSQARR 180 +PTD EVA+A LRLMRLL RPA+ VL L RELHYWLLAG+HG AI LGWPD A+R Sbjct: 129 EPTDTEVAEAVLRLMRLLGRPASAAVLHASLMRELHYWLLAGRHGPAISRLGWPDGHAQR 188 Query: 181 VARAVEVLRTDFAQALPVERLAAVAGMSPSSFHQHFRSVTSLSPLQFQKQLRLIEARRLM 240 +ARAV VLRT+F + LPVERLA VAGMS SSFHQHFR TSL+PLQFQKQLRLIEARRLM Sbjct: 189 IARAVTVLRTEFHRPLPVERLAGVAGMSVSSFHQHFRKQTSLTPLQFQKQLRLIEARRLM 248 Query: 241 LTDGVSASSAAFAVGYESVPQFTREYGRMFGLPPAKDTEEA 281 L +G SASSAAF+VGYESV QF+REY R+FGLPPA+DT A Sbjct: 249 LGEGASASSAAFSVGYESVSQFSREYRRLFGLPPARDTTVA 289 >ref|YP_004381286.1| AraC family transcriptional regulator [Pseudomonas mendocina NK-01] gb|AEB59534.1| AraC family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 290 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 188/277 (67%), Positives = 224/277 (80%) Query: 1 VQRYADAHAGRDGLAHTPIAGLTIVRATEVSELLYAISRPLVCLVLQGGKRVAMGAQAFA 60 V+ Y D GLA PI GLTI+R +E S L YAI+RPL CLVLQG KRV MG + F Sbjct: 9 VRDYLDKSENFGGLAQAPIPGLTIIRTSEPSGLDYAITRPLACLVLQGCKRVMMGTRTFN 68 Query: 61 FSAGDSLLITADVPTVSQITHASLAAPYLSLVLELDPAVIADLAMQMEAAPASAQAPVRV 120 FSAGDSLLITADVPTVSQI AS APY+SLV++LDPA++ +L +M+A P++ P+R+ Sbjct: 69 FSAGDSLLITADVPTVSQILEASHEAPYISLVIDLDPALLTELMEEMKAVPSAEVEPIRI 128 Query: 121 DPTDAEVADAALRLMRLLDRPAALPVLQTQLTRELHYWLLAGKHGAAIRNLGWPDSQARR 180 +PTD+EVA+AALRLMRLL+RPA+ VL RELHYWLLAG+HG+AI LGWPD A+R Sbjct: 129 EPTDSEVAEAALRLMRLLERPASAAVLHASRVRELHYWLLAGRHGSAISRLGWPDGHAQR 188 Query: 181 VARAVEVLRTDFAQALPVERLAAVAGMSPSSFHQHFRSVTSLSPLQFQKQLRLIEARRLM 240 +ARAV+VLRT+F + LPVE LA+VAGMSPSSFH HFR+ TSL+PLQFQKQLRLIEARRLM Sbjct: 189 IARAVKVLRTEFTRPLPVEHLASVAGMSPSSFHHHFRNQTSLTPLQFQKQLRLIEARRLM 248 Query: 241 LTDGVSASSAAFAVGYESVPQFTREYGRMFGLPPAKD 277 +G SASSAAFAVGYESV QF+REY R+FGLPPA+D Sbjct: 249 TGEGASASSAAFAVGYESVSQFSREYRRLFGLPPARD 285 >ref|YP_002129849.1| transcriptional regulator, AraC type [Phenylobacterium zucineum HLK1] gb|ACG77420.1| transcriptional regulator, AraC type [Phenylobacterium zucineum HLK1] Length = 296 Score = 361 bits (926), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 185/282 (65%), Positives = 222/282 (78%) Query: 1 VQRYADAHAGRDGLAHTPIAGLTIVRATEVSELLYAISRPLVCLVLQGGKRVAMGAQAFA 60 V+RYA+ HA G+A T + GL +VR T EL +AI RPL+CLV+QG K+V MG++ Sbjct: 9 VRRYAERHADAAGVARTSVRGLNLVRTTSTGELRHAIERPLICLVVQGAKQVTMGSRTLT 68 Query: 61 FSAGDSLLITADVPTVSQITHASLAAPYLSLVLELDPAVIADLAMQMEAAPASAQAPVRV 120 FSAGDS+L+TAD PTVSQIT AS APYL+L L+LD AVIA L +M+AA A +R Sbjct: 69 FSAGDSMLLTADAPTVSQITQASGGAPYLALALDLDAAVIAGLCDEMKAAAVDAGPALRF 128 Query: 121 DPTDAEVADAALRLMRLLDRPAALPVLQTQLTRELHYWLLAGKHGAAIRNLGWPDSQARR 180 PTDAE ADAALRL+ LL+RPA++PVLQ QL RE+HYWLLAG+HG AIR LG P SQARR Sbjct: 129 QPTDAEAADAALRLVTLLERPASIPVLQAQLVREMHYWLLAGRHGPAIRQLGSPASQARR 188 Query: 181 VARAVEVLRTDFAQALPVERLAAVAGMSPSSFHQHFRSVTSLSPLQFQKQLRLIEARRLM 240 +ARAVE+LR DFA +PV RLAA A MSPS+FH+HFR+VTSLSPLQFQKQLRLIEARRLM Sbjct: 189 IARAVEILRKDFAAPIPVARLAAAARMSPSTFHKHFRTVTSLSPLQFQKQLRLIEARRLM 248 Query: 241 LTDGVSASSAAFAVGYESVPQFTREYGRMFGLPPAKDTEEAK 282 L G+ S AA+ VGYESVPQFTREY R FG PP ++T++A+ Sbjct: 249 LAKGLRPSVAAYEVGYESVPQFTREYRRQFGQPPGRETQQAR 290 >ref|YP_914869.1| AraC-like transcriptional regulator [Paracoccus denitrificans PD1222] gb|ABL69173.1| transcriptional regulator, AraC family [Paracoccus denitrificans PD1222] Length = 304 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 176/282 (62%), Positives = 215/282 (76%), Gaps = 1/282 (0%) Query: 1 VQRYADAHAGRDGLAHTPIAGLTIVRATEVSELLYAISRPLVCLVLQGGKRVAMGAQAFA 60 V+R+ADAHA R GLA TP GL +VR EL A+ +PL+ + LQG KRV MG +F Sbjct: 21 VRRHADAHADRFGLAPTPFPGLGVVRVMRPGELQVAVQKPLIAICLQGRKRVTMGTTSFD 80 Query: 61 FSAGDSLLITADVPTVSQITHASLAAPYLSLVLELDPAVIADLAMQMEAAPASAQAPVRV 120 + AG++L+ITADVPT SQI AS AAPY +L LELDPA++ L+++ + PA A APVR+ Sbjct: 81 YGAGEALVITADVPTTSQILDASPAAPYYALALELDPALLRRLSVEADLRPAGA-APVRI 139 Query: 121 DPTDAEVADAALRLMRLLDRPAALPVLQTQLTRELHYWLLAGKHGAAIRNLGWPDSQARR 180 +P D +V DAA RLMRLL RPAALPVL L RE+HYWLL G+HGAAIR LG DS A R Sbjct: 140 EPADPDVTDAAWRLMRLLGRPAALPVLGESLLREMHYWLLTGRHGAAIRGLGVVDSHAHR 199 Query: 181 VARAVEVLRTDFAQALPVERLAAVAGMSPSSFHQHFRSVTSLSPLQFQKQLRLIEARRLM 240 +ARAV ++R D+A+ L + LAAVAGMS SSFHQHFR++T+LSPLQFQKQLRLIEARR M Sbjct: 200 IARAVALIRQDYARTLRIGDLAAVAGMSESSFHQHFRTITTLSPLQFQKQLRLIEARRQM 259 Query: 241 LTDGVSASSAAFAVGYESVPQFTREYGRMFGLPPAKDTEEAK 282 L DGV + AA AVGYESVPQFTR+Y R+FG+PP +D EA+ Sbjct: 260 LADGVGITHAAHAVGYESVPQFTRDYARLFGMPPGRDMREAR 301