BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0048.p (372 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase [Herbaspiri... 545 e-153 ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidase [Herminiimo... 474 e-131 ref|YP_004753687.1| Penicillin-binding protein (D-alanyl-D-alani... 471 e-130 emb|CAL61007.2| D-alanyl-D-alanine endopeptidase precursor (DD-e... 466 e-129 ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidase [Janthinoba... 464 e-128 >ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase [Herbaspirillum seropedicae SmR1] gb|ADJ63157.1| D-alanyl-D-alanine-endopeptidase (penicillin-binding) protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust. Identities = 292/372 (78%), Positives = 323/372 (86%), Gaps = 6/372 (1%) Query: 1 MLKSALAAVATALLVLVGTSSVQAQTSPNSKKTAVKKAVIKKNVVHRRPVAAPKRATQAS 60 M+KSALA + + L + G + AQT N+ K VKKAV K+ +PV+ + + S Sbjct: 1 MIKSALAVLTSLLFIHAGLAPAAAQTVNNTAKKPVKKAVAKRAA---QPVS--RTVAKGS 55 Query: 61 LDRREKLVKKVAVVHGKRRVVYQRVAAMPTVPVVPPVMTAGDMAGLNLTQDPLALRSNVA 120 L+ REKLV+KV VV GKR+V YQRV+A P+VPVVPPVMTAGDMAGLNLT DPLALRSNVA Sbjct: 56 LNNREKLVRKVTVVKGKRQVSYQRVSAAPSVPVVPPVMTAGDMAGLNLTPDPLALRSNVA 115 Query: 121 LVIDQASSQVLFEKNSSVALPIASVTKLMTSLVVVEARQNMEEILTVSDDDVDRQKHSSS 180 LVIDQA+SQVLFEKNS VALPIASVTKLMT+LVVVEARQNMEE+LTV+DDDVDR+KHSSS Sbjct: 116 LVIDQANSQVLFEKNSGVALPIASVTKLMTALVVVEARQNMEEVLTVTDDDVDREKHSSS 175 Query: 181 RLRVGAQLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTHYVD 240 RLRVGA LSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDT YVD Sbjct: 176 RLRVGATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTRYVD 235 Query: 241 STGLSSNNVASARDLAKLVVAAYNYPIIRQYSTDAKYMVEPSGHALQYASSNRLVASKDW 300 STGLSS NVASARDLAKLVVAAYNYPIIRQYSTD KYMVEPSGHALQY SSNRL ++K+W Sbjct: 236 STGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHALQYNSSNRLTSNKEW 295 Query: 301 DIGLQKTGYINEAGHCLVMLTKIEGRSVVMVFLDSKGKLSHVGDAARMRKWLSEQGPQNL 360 DIGLQKTG+INEAGHCLVM T+IEGR +VMVFLDSKG+LSHVGDAARMRKWL + P NL Sbjct: 296 DIGLQKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAARMRKWLVDDQPSNL 355 Query: 361 TRVNLRARADEG 372 TR+ + RADEG Sbjct: 356 TRMKM-VRADEG 366 >ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidase [Herminiimonas arsenicoxydans] Length = 400 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/312 (72%), Positives = 270/312 (86%), Gaps = 1/312 (0%) Query: 55 RATQASLDRREKLVKKVAVVHGKRRVVYQRVAAMPTVPVVPPVMTAGDMAGLNLTQDPLA 114 R ASL+ EKLVKKV V+GK+RV+YQRVA P +P VPPVMTAGD+AGL++T+D LA Sbjct: 87 RTRSASLNSDEKLVKKVVTVNGKKRVIYQRVA-QPVIPTVPPVMTAGDIAGLSMTRDALA 145 Query: 115 LRSNVALVIDQASSQVLFEKNSSVALPIASVTKLMTSLVVVEARQNMEEILTVSDDDVDR 174 L S+VALVIDQ++S+VLFEKN++V LPIAS+TKLMT LVVVEA+Q+M E+L V+ +D+DR Sbjct: 146 LASSVALVIDQSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQDMNEMLEVTAEDIDR 205 Query: 175 QKHSSSRLRVGAQLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMM 234 +K+SSSRLRVG+QLSR +MLHIALMSSENRAASALGR+YPGGL AFVA MNAKA+SLGM Sbjct: 206 EKNSSSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGLRAFVATMNAKAKSLGMR 265 Query: 235 DTHYVDSTGLSSNNVASARDLAKLVVAAYNYPIIRQYSTDAKYMVEPSGHALQYASSNRL 294 THYVDSTGLSSNNVASARDLAKLVV AYN+PI+RQYSTD+KY+VEP G ALQYA+SNRL Sbjct: 266 GTHYVDSTGLSSNNVASARDLAKLVVEAYNHPILRQYSTDSKYVVEPGGRALQYANSNRL 325 Query: 295 VASKDWDIGLQKTGYINEAGHCLVMLTKIEGRSVVMVFLDSKGKLSHVGDAARMRKWLSE 354 V + DW+IG+QKTGYI+EAG CLVM T I+ R +VM+FLDSKGK S +GDAAR+RKWL Sbjct: 326 VTNPDWEIGIQKTGYISEAGRCLVMQTNIKERPIVMIFLDSKGKFSRLGDAARIRKWLET 385 Query: 355 QGPQNLTRVNLR 366 PQN+ R N R Sbjct: 386 MEPQNVARSNRR 397 >ref|YP_004753687.1| Penicillin-binding protein (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Collimonas fungivorans Ter331] gb|AEK62864.1| Penicillin-binding protein precursor (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase) [Collimonas fungivorans Ter331] Length = 387 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 218/316 (68%), Positives = 272/316 (86%) Query: 50 VAAPKRATQASLDRREKLVKKVAVVHGKRRVVYQRVAAMPTVPVVPPVMTAGDMAGLNLT 109 ++A R+ AS ++ EKLVKKV +VHG+R+V YQR+A P VP +PPV++AG+ AGLNLT Sbjct: 67 ISARGRSNTASFNKNEKLVKKVVMVHGRRKVTYQRIAFAPVVPALPPVLSAGEQAGLNLT 126 Query: 110 QDPLALRSNVALVIDQASSQVLFEKNSSVALPIASVTKLMTSLVVVEARQNMEEILTVSD 169 +DPL L+S+VALV+DQ SS+VL +KNS +ALPIAS+TKLMTS+VVVE++Q+M E+LTV+D Sbjct: 127 RDPLELKSSVALVLDQNSSEVLLDKNSHIALPIASLTKLMTSMVVVESKQDMNEVLTVTD 186 Query: 170 DDVDRQKHSSSRLRVGAQLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKAR 229 DD+DR+KHSSSRLR+G+QL+R DMLHIALMSSENRAASALGR+YPGGLPAFVAAMNAKAR Sbjct: 187 DDIDREKHSSSRLRIGSQLTRADMLHIALMSSENRAASALGRSYPGGLPAFVAAMNAKAR 246 Query: 230 SLGMMDTHYVDSTGLSSNNVASARDLAKLVVAAYNYPIIRQYSTDAKYMVEPSGHALQYA 289 +LGM +THYVDSTGLS NVASARDL++LV+AAY +P+IRQYSTD+KY+VEP G LQY+ Sbjct: 247 ALGMTETHYVDSTGLSHLNVASARDLSRLVMAAYQHPVIRQYSTDSKYVVEPGGRPLQYS 306 Query: 290 SSNRLVASKDWDIGLQKTGYINEAGHCLVMLTKIEGRSVVMVFLDSKGKLSHVGDAARMR 349 +SN LV + +W IGLQKTGYINEAG C+VM T I+GR +VMVFLDS+GK S DA R+R Sbjct: 307 TSNHLVENPEWQIGLQKTGYINEAGRCMVMQTTIDGRQIVMVFLDSRGKYSRQADADRVR 366 Query: 350 KWLSEQGPQNLTRVNL 365 KWL++ P LTRV + Sbjct: 367 KWLADAHPATLTRVKI 382 >emb|CAL61007.2| D-alanyl-D-alanine endopeptidase precursor (DD-endopeptidase) (Penicillin-binding protein 5) (PBP-5) [Herminiimonas arsenicoxydans] Length = 308 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 223/302 (73%), Positives = 265/302 (87%), Gaps = 1/302 (0%) Query: 65 EKLVKKVAVVHGKRRVVYQRVAAMPTVPVVPPVMTAGDMAGLNLTQDPLALRSNVALVID 124 EKLVKKV V+GK+RV+YQRVA P +P VPPVMTAGD+AGL++T+D LAL S+VALVID Sbjct: 5 EKLVKKVVTVNGKKRVIYQRVA-QPVIPTVPPVMTAGDIAGLSMTRDALALASSVALVID 63 Query: 125 QASSQVLFEKNSSVALPIASVTKLMTSLVVVEARQNMEEILTVSDDDVDRQKHSSSRLRV 184 Q++S+VLFEKN++V LPIAS+TKLMT LVVVEA+Q+M E+L V+ +D+DR+K+SSSRLRV Sbjct: 64 QSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQDMNEMLEVTAEDIDREKNSSSRLRV 123 Query: 185 GAQLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTHYVDSTGL 244 G+QLSR +MLHIALMSSENRAASALGR+YPGGL AFVA MNAKA+SLGM THYVDSTGL Sbjct: 124 GSQLSRANMLHIALMSSENRAASALGRHYPGGLRAFVATMNAKAKSLGMRGTHYVDSTGL 183 Query: 245 SSNNVASARDLAKLVVAAYNYPIIRQYSTDAKYMVEPSGHALQYASSNRLVASKDWDIGL 304 SSNNVASARDLAKLVV AYN+PI+RQYSTD+KY+VEP G ALQYA+SNRLV + DW+IG+ Sbjct: 184 SSNNVASARDLAKLVVEAYNHPILRQYSTDSKYVVEPGGRALQYANSNRLVTNPDWEIGI 243 Query: 305 QKTGYINEAGHCLVMLTKIEGRSVVMVFLDSKGKLSHVGDAARMRKWLSEQGPQNLTRVN 364 QKTGYI+EAG CLVM T I+ R +VM+FLDSKGK S +GDAAR+RKWL PQN+ R N Sbjct: 244 QKTGYISEAGRCLVMQTNIKERPIVMIFLDSKGKFSRLGDAARIRKWLETMEPQNVARSN 303 Query: 365 LR 366 R Sbjct: 304 RR 305 >ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille] gb|ABR89912.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille] Length = 436 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 223/304 (73%), Positives = 264/304 (86%), Gaps = 1/304 (0%) Query: 57 TQASLDRREKLVKKVAVVHGKRRVVYQRVAAMPTVPVVPPVMTAGDMAGLNLTQDPLALR 116 T SL+ EKLVKK VV GK++V+YQRVA P + VVPPV+TAGD+AGLN+T+D LAL Sbjct: 125 TTTSLNSNEKLVKKEVVVRGKKKVIYQRVAK-PVMTVVPPVLTAGDIAGLNMTRDSLALA 183 Query: 117 SNVALVIDQASSQVLFEKNSSVALPIASVTKLMTSLVVVEARQNMEEILTVSDDDVDRQK 176 SNVALV+DQ++S VLFEKN++V LPIAS+TKLMT LVVVEA+Q+M EIL V+++D+DR+K Sbjct: 184 SNVALVLDQSTSAVLFEKNANVTLPIASITKLMTGLVVVEAQQDMNEILEVTEEDIDREK 243 Query: 177 HSSSRLRVGAQLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDT 236 +SSSRLRVG+QLSR +MLHIALMSSENRAASALGR+YPGG+ AFVAAMNAKARSLGM T Sbjct: 244 NSSSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGIRAFVAAMNAKARSLGMNGT 303 Query: 237 HYVDSTGLSSNNVASARDLAKLVVAAYNYPIIRQYSTDAKYMVEPSGHALQYASSNRLVA 296 HYVDSTGLSSNNVASA DLAKLV+AA N+ I+RQYSTD KY+VEP G ALQYA+SNRLV Sbjct: 304 HYVDSTGLSSNNVASAADLAKLVIAASNHSILRQYSTDTKYVVEPGGRALQYANSNRLVN 363 Query: 297 SKDWDIGLQKTGYINEAGHCLVMLTKIEGRSVVMVFLDSKGKLSHVGDAARMRKWLSEQG 356 + DW+IG+QKTGYI+EAG CLVM I GR +VM+FLDSKGKLS +GDAAR+RKWL Q Sbjct: 364 NPDWEIGIQKTGYISEAGRCLVMQANINGRPIVMIFLDSKGKLSRLGDAARIRKWLETQH 423 Query: 357 PQNL 360 PQN+ Sbjct: 424 PQNI 427