BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0046.p (274 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775063.1| XRE family transcription regulator protein [... 361 6e-98 ref|YP_004753689.1| hypothetical protein CFU_3041 [Collimonas fu... 308 5e-82 ref|YP_003976610.1| transcriptional regulator 1 [Achromobacter x... 279 3e-73 gb|EFV84843.1| transcriptional regulator [Achromobacter xylosoxi... 275 5e-72 ref|ZP_06685607.1| helix-turn-helix domain protein [Achromobacte... 275 7e-72 >ref|YP_003775063.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63155.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 361 bits (927), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 180/264 (68%), Positives = 207/264 (78%), Gaps = 1/264 (0%) Query: 12 LKPDIKRKALGEFIKSQREQISPTLAGLGHLSHGTRRRTPGLRREEVAQLCGISVTWYTW 71 ++PD+ R+ALGEFIK+QR+Q++P AGL ++ RRRTPGLRREEVAQLCGISVTWYTW Sbjct: 1 MEPDLARRALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTW 60 Query: 72 IEQGRTDSISPQALARIADALHLPRAKRTYLFELAEKKDPVHQEDHTES-IAPEILDVVR 130 IEQGRT+S+SPQALARIADAL LPRAKRTYLFELA KKDP + H ES IAPEIL+VV Sbjct: 61 IEQGRTESVSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPEILEVVS 120 Query: 131 SIRQPAYVLDRYWNALACNAPARKLFTGWLTAGSEYGNLLFFTFCTTASQELITDWEQRA 190 R PAY+LDR WN +A N ARKLF GWL S NLL F F + ++ L DWEQRA Sbjct: 121 QFRAPAYLLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQRA 180 Query: 191 RRLVAEFRADCGQYLDDPQIKTMVEELSARSALFKRAWSLQDVVEREGGKRLFRHPVQGE 250 RLVAEFRADC LDDP ++ +V+ELSA +ALF+RAW LQDVV REGG+R FR P E Sbjct: 181 HRLVAEFRADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTE 240 Query: 251 LTYQQVNFRVANRPDLKLITLMPV 274 L Y QVNFRVANRPDLKL+TLMP Sbjct: 241 LRYLQVNFRVANRPDLKLVTLMPA 264 >ref|YP_004753689.1| hypothetical protein CFU_3041 [Collimonas fungivorans Ter331] gb|AEK62866.1| hypothetical protein CFU_3041 [Collimonas fungivorans Ter331] Length = 260 Score = 308 bits (790), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 162/258 (62%), Positives = 195/258 (75%), Gaps = 3/258 (1%) Query: 17 KRKALGEFIKSQREQISPTLAGLGHLSHGTRRRTPGLRREEVAQLCGISVTWYTWIEQGR 76 KRKALGEFI++QR Q+ PT A L TRRRTPGLRREEVAQLC ISVTWYTWIEQGR Sbjct: 6 KRKALGEFIRTQRIQL-PTAAL--RLGGSTRRRTPGLRREEVAQLCDISVTWYTWIEQGR 62 Query: 77 TDSISPQALARIADALHLPRAKRTYLFELAEKKDPVHQEDHTESIAPEILDVVRSIRQPA 136 T S+S ALARIA+AL L RAKR YLFEL+ KKDP Q+ + I EIL V +I+ PA Sbjct: 63 TVSVSAAALARIAEALQLSRAKRAYLFELSGKKDPQAQDGLAQEIPAEILAVTDTIKTPA 122 Query: 137 YVLDRYWNALACNAPARKLFTGWLTAGSEYGNLLFFTFCTTASQELITDWEQRARRLVAE 196 Y+LDR+WNA+A N A+ LF GWL + NLL +T+CT + LI+DWEQRA RL AE Sbjct: 123 YLLDRHWNAVAWNRAAKTLFVGWLDKKTASRNLLEYTYCTADAANLISDWEQRASRLAAE 182 Query: 197 FRADCGQYLDDPQIKTMVEELSARSALFKRAWSLQDVVEREGGKRLFRHPVQGELTYQQV 256 FRADCG YLD+P+I +V LSA S+ FKRAW+L DVVE+EGG+R F HP G+L+Y+QV Sbjct: 183 FRADCGMYLDEPEIAELVARLSAASSAFKRAWNLHDVVEKEGGERRFSHPTLGQLSYRQV 242 Query: 257 NFRVANRPDLKLITLMPV 274 N RVANR +LKL+ L+P+ Sbjct: 243 NLRVANRLELKLVMLLPL 260 >ref|YP_003976610.1| transcriptional regulator 1 [Achromobacter xylosoxidans A8] gb|ADP13895.1| transcriptional regulator 1 [Achromobacter xylosoxidans A8] Length = 272 Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 139/257 (54%), Positives = 181/257 (70%), Gaps = 5/257 (1%) Query: 16 IKRKALGEFIKSQREQISPTLAGLGHLSHGTRRRTPGLRREEVAQLCGISVTWYTWIEQG 75 ++R+ALGEF++S R +I+P +AGL G RRRTPGLRREEVAQLCGISVTWYTWIEQG Sbjct: 17 LRRQALGEFVRSARSRITPQMAGL---PEGMRRRTPGLRREEVAQLCGISVTWYTWIEQG 73 Query: 76 RTDSISPQALARIADALHLPRAKRTYLFELAEKKDPVHQEDHTESIAPEILDVVRSIRQP 135 R S+SP +RIA L L RA+R YLF+LA+ DP H D + P + + V +I P Sbjct: 74 REVSVSPSVWSRIAGVLQLARAERAYLFDLADCADPQHGRDDAGAPGP-LQECVNAINAP 132 Query: 136 AYVLDRYWNALACNAPARKLFTGWLTAGSEYGNLLFFTFCTTASQELITDWEQRARRLVA 195 AYVLDR WN LA N P R+LF W +E NLL + F A++EL+ DW+QRARR+VA Sbjct: 133 AYVLDRAWNVLAYNEPLRELFDNWPARDAE-PNLLRYIFLDPAARELVVDWDQRARRVVA 191 Query: 196 EFRADCGQYLDDPQIKTMVEELSARSALFKRAWSLQDVVEREGGKRLFRHPVQGELTYQQ 255 EFRAD G +LD+P + +++ L+ +S +F W+ VVEREGG R F+HP +G+L YQQ Sbjct: 192 EFRADAGAHLDEPGVLALLDSLNRQSPVFAHWWTRHAVVEREGGLREFQHPGRGKLAYQQ 251 Query: 256 VNFRVANRPDLKLITLM 272 + FR+A PDLKL+ L+ Sbjct: 252 ITFRLATHPDLKLVMLL 268 >gb|EFV84843.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 275 Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 137/257 (53%), Positives = 176/257 (68%), Gaps = 4/257 (1%) Query: 16 IKRKALGEFIKSQREQISPTLAGLGHLSHGTRRRTPGLRREEVAQLCGISVTWYTWIEQG 75 ++R+ALGEF++S R +I+P +AGL G RRRTPGLRREEVAQLCGISVTWYTWIEQG Sbjct: 17 LRRQALGEFVRSARSRITPQMAGL---PEGMRRRTPGLRREEVAQLCGISVTWYTWIEQG 73 Query: 76 RTDSISPQALARIADALHLPRAKRTYLFELAEKKDPVHQEDHTESIAPEILDVVRSIRQP 135 R S+SP +RIA L L RA+R YLF+LA+ DP H D + + V +I P Sbjct: 74 REVSVSPSVWSRIAGVLQLARAERAYLFDLADCADPQHARDDALGAPGSLRECVDAITAP 133 Query: 136 AYVLDRYWNALACNAPARKLFTGWLTAGSEYGNLLFFTFCTTASQELITDWEQRARRLVA 195 AYVLDR WN LACN P R+LF W E NLL + F A++EL+ DWEQRARR+VA Sbjct: 134 AYVLDRAWNVLACNEPLRELFDDWPARDPE-PNLLRYIFLDPAARELVVDWEQRARRVVA 192 Query: 196 EFRADCGQYLDDPQIKTMVEELSARSALFKRAWSLQDVVEREGGKRLFRHPVQGELTYQQ 255 EFRAD G +LD+P + +++ L+ +S +F W+ VVEREGG R F HP +G + +QQ Sbjct: 193 EFRADAGAHLDEPTVLALIDALNRQSPVFAHWWNRHAVVEREGGLREFAHPRRGRMAFQQ 252 Query: 256 VNFRVANRPDLKLITLM 272 + FR+A DLKL+ L+ Sbjct: 253 ITFRLATHLDLKLVMLL 269 >ref|ZP_06685607.1| helix-turn-helix domain protein [Achromobacter piechaudii ATCC 43553] gb|EFF77453.1| helix-turn-helix domain protein [Achromobacter piechaudii ATCC 43553] Length = 261 Score = 275 bits (702), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 138/257 (53%), Positives = 177/257 (68%), Gaps = 4/257 (1%) Query: 16 IKRKALGEFIKSQREQISPTLAGLGHLSHGTRRRTPGLRREEVAQLCGISVTWYTWIEQG 75 ++R+ALGEF++S R +I+P +AGL G RRRTPGLRREEVAQLCGISVTWYTWIEQG Sbjct: 1 MRRQALGEFVRSARSRITPRMAGL---PEGMRRRTPGLRREEVAQLCGISVTWYTWIEQG 57 Query: 76 RTDSISPQALARIADALHLPRAKRTYLFELAEKKDPVHQEDHTESIAPEILDVVRSIRQP 135 R S+SP +RIA L L RA+R YLF+LA+ DP H D + + + V +I P Sbjct: 58 REVSVSPAVWSRIAGVLQLARAERAYLFDLADCADPHHARDDAGAAPGPLQECVDAINAP 117 Query: 136 AYVLDRYWNALACNAPARKLFTGWLTAGSEYGNLLFFTFCTTASQELITDWEQRARRLVA 195 AYVLDR WN LA NAP R LF W E NLL + F A++EL+ DW+QRARR+VA Sbjct: 118 AYVLDRAWNVLAYNAPLRDLFDNWPARDPE-PNLLRYIFLDPAARELVVDWDQRARRVVA 176 Query: 196 EFRADCGQYLDDPQIKTMVEELSARSALFKRAWSLQDVVEREGGKRLFRHPVQGELTYQQ 255 EFRAD G +LD+ + T+++ L+ +S +F W+ VVEREGG R F+HP G L +QQ Sbjct: 177 EFRADAGAHLDESGVLTLLDTLNRQSPVFAHWWTRHAVVEREGGLREFQHPRDGRLAFQQ 236 Query: 256 VNFRVANRPDLKLITLM 272 + FR+A PDLKL+ L+ Sbjct: 237 ITFRLATHPDLKLVMLL 253