BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0042.p         (219 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775061.1| deacetylase [Herbaspirillum seropedicae SmR1...   237   9e-61
ref|YP_004753691.1| Deacetylase [Collimonas fungivorans Ter331] ...   231   5e-59
ref|ZP_04761739.1| histone deacetylase superfamily [Acidovorax d...   194   6e-48
ref|NP_519727.1| hypothetical protein RSc1606 [Ralstonia solanac...   190   1e-46
gb|AEG68982.1| Deacetylase [Ralstonia solanacearum Po82]              190   1e-46

>ref|YP_003775061.1| deacetylase [Herbaspirillum seropedicae SmR1]
 gb|ADJ63153.1| deacetylase protein [Herbaspirillum seropedicae SmR1]
          Length = 331

 Score =  237 bits (605), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 125/145 (86%)

Query: 1   LRAYYSDHFVLPLPVGHRFPMIKYRLIREGAARAVADLEFHEAQAATDGVLALAHHPRYV 60
           ++AYYSDHFVLPLP GHRFPM+KYR+IREGAAR V  LEFHEA  A+DG LALAHHP Y+
Sbjct: 16  VKAYYSDHFVLPLPPGHRFPMVKYRMIREGAARTVPGLEFHEAMPASDGELALAHHPDYI 75

Query: 61  DLVSRGALPEQVQKDIGFPWSPEMVERSRRSAGATIAACRSALEQGVAINLAGGTHHAYA 120
              SRG L    Q++IGFPWSPEMVERSRRS+GATIAACR+A  +GVA+NLAGGTHHAY 
Sbjct: 76  GRASRGELTAAEQREIGFPWSPEMVERSRRSSGATIAACRAAFSEGVAVNLAGGTHHAYG 135

Query: 121 DRGAGFCVFNDAAVASRLMQAERRA 145
           D GAGFCVFNDAA+A+RLMQAERRA
Sbjct: 136 DHGAGFCVFNDAAIAARLMQAERRA 160


>ref|YP_004753691.1| Deacetylase [Collimonas fungivorans Ter331]
 gb|AEK62868.1| Deacetylase [Collimonas fungivorans Ter331]
          Length = 311

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 107/146 (73%), Positives = 125/146 (85%), Gaps = 2/146 (1%)

Query: 1   LRAYYSDHFVLPLPVGHRFPMIKYRLIREGAARAVADLEFHEAQAATDGVLALAHHPRYV 60
           ++A+YSDHFVLPLP GHRFPM KYRLI E A R ++D++FHEA   +DGVLALAHHP Y+
Sbjct: 1   MKAFYSDHFVLPLPAGHRFPMQKYRLIHEAALRTISDIDFHEAPTTSDGVLALAHHPHYI 60

Query: 61  DLVSRGALPEQVQKDIGFPWSPEMVERSRRSAGATIAACRSALEQG--VAINLAGGTHHA 118
             VS G LPE VQK IGFPW+P+MVERSRRSAGATIAACR+AL     +A+NLAGGTHHA
Sbjct: 61  SAVSAGTLPESVQKAIGFPWTPQMVERSRRSAGATIAACRAALTDPGRIAVNLAGGTHHA 120

Query: 119 YADRGAGFCVFNDAAVASRLMQAERR 144
           +AD+GAGFCVFNDAA+A+RLMQAERR
Sbjct: 121 FADQGAGFCVFNDAAIAARLMQAERR 146


>ref|ZP_04761739.1| histone deacetylase superfamily [Acidovorax delafieldii 2AN]
 gb|EER61453.1| histone deacetylase superfamily [Acidovorax delafieldii 2AN]
          Length = 311

 Score =  194 bits (494), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 95/143 (66%), Positives = 112/143 (78%)

Query: 1   LRAYYSDHFVLPLPVGHRFPMIKYRLIREGAARAVADLEFHEAQAATDGVLALAHHPRYV 60
           + AYY+DHFVLPLP GHRFPM KY ++R+  A  +  +   EA AA+DG LALAH P Y+
Sbjct: 1   MHAYYADHFVLPLPQGHRFPMAKYGMLRDRLALDLPGVALQEAPAASDGELALAHVPSYI 60

Query: 61  DLVSRGALPEQVQKDIGFPWSPEMVERSRRSAGATIAACRSALEQGVAINLAGGTHHAYA 120
             V+ G L    Q++IGFPWSP M ER+RRS GATIAACR+AL +GVA NLAGGTHHAYA
Sbjct: 61  QAVATGTLAPAAQREIGFPWSPAMAERARRSVGATIAACRAALREGVAGNLAGGTHHAYA 120

Query: 121 DRGAGFCVFNDAAVASRLMQAER 143
           DRG+GFCVFND AVA+RLMQAER
Sbjct: 121 DRGSGFCVFNDIAVAARLMQAER 143


>ref|NP_519727.1| hypothetical protein RSc1606 [Ralstonia solanacearum GMI1000]
 emb|CAD15308.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 323

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/140 (66%), Positives = 107/140 (76%)

Query: 1   LRAYYSDHFVLPLPVGHRFPMIKYRLIREGAARAVADLEFHEAQAATDGVLALAHHPRYV 60
           ++A+Y+DHFVLPLP GHRFPM KY L+RE A   V  L  HEA  A D  L LAH P YV
Sbjct: 3   MQAFYTDHFVLPLPPGHRFPMRKYSLLRERALAEVPGLVMHEAPRAGDDALLLAHAPDYV 62

Query: 61  DLVSRGALPEQVQKDIGFPWSPEMVERSRRSAGATIAACRSALEQGVAINLAGGTHHAYA 120
             V  G L    Q++IGFPWSPEMVERSRRSAGAT+AAC +A+  G+A+NLAGGTHHAYA
Sbjct: 63  SAVGAGRLDPARQREIGFPWSPEMVERSRRSAGATMAACEAAMADGIAVNLAGGTHHAYA 122

Query: 121 DRGAGFCVFNDAAVASRLMQ 140
           D+G GFCVFNDAA+ASR MQ
Sbjct: 123 DKGGGFCVFNDAAIASRWMQ 142


>gb|AEG68982.1| Deacetylase [Ralstonia solanacearum Po82]
          Length = 324

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/140 (65%), Positives = 107/140 (76%)

Query: 1   LRAYYSDHFVLPLPVGHRFPMIKYRLIREGAARAVADLEFHEAQAATDGVLALAHHPRYV 60
           ++A+Y+DHFVLPLP GHRFPM KY L+RE  A  V  L  HEA  A D  L LAH P Y+
Sbjct: 3   MQAFYTDHFVLPLPPGHRFPMRKYSLLRERIAAEVPGLVLHEAPRAGDDALLLAHAPDYI 62

Query: 61  DLVSRGALPEQVQKDIGFPWSPEMVERSRRSAGATIAACRSALEQGVAINLAGGTHHAYA 120
           D V  G L    Q++IGFPWSP MVERSRRSAGAT+AAC +A+  G+A+NLAGGTHHAYA
Sbjct: 63  DAVGAGKLDPARQREIGFPWSPAMVERSRRSAGATMAACEAAMADGIAVNLAGGTHHAYA 122

Query: 121 DRGAGFCVFNDAAVASRLMQ 140
           D+G GFCVFNDAA+A+R MQ
Sbjct: 123 DKGGGFCVFNDAAIAARWMQ 142