BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0035.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775055.1| signal peptide protein [Herbaspirillum serop... 514 e-144 ref|YP_004753699.1| hypothetical protein CFU_3051 [Collimonas fu... 479 e-133 ref|ZP_08272653.1| Surface antigen [Oxalobacteraceae bacterium I... 464 e-129 ref|YP_002005892.1| hypothetical protein RALTA_A1886 [Cupriavidu... 402 e-110 ref|YP_726805.1| cytochrome d1 heme subunit [Ralstonia eutropha ... 400 e-109 >ref|YP_003775055.1| signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ63147.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 241/297 (81%), Positives = 270/297 (90%) Query: 1 VVVLNSGDATVTLLDQSTYKEINTFSVGKEPHHLMATPDNKSLIVASATGNQLIFLDPKT 60 VVVLNSGDA+V+LLD++ KE++TFSVGKEPHHLMATPDNKSLIVASATGNQL+FLDPKT Sbjct: 31 VVVLNSGDASVSLLDETGEKELSTFSVGKEPHHLMATPDNKSLIVASATGNQLLFLDPKT 90 Query: 61 GEVQRQLRGIIDPYQIGFSPDQKWFIANGLRLDRVDVYRYDGHNLDLAKRVRLAKTPSHI 120 G VQR++R IIDPYQIGF+PDQKWF+A GLRLDRVDVY YDG +L L+KR+ L KTPSHI Sbjct: 91 GAVQRKIRDIIDPYQIGFTPDQKWFVATGLRLDRVDVYSYDGQDLKLSKRIPLPKTPSHI 150 Query: 121 AFDAASTTAFITQQGSNEISAIDLATQQVKWTMPVGKLPAGIFMTPDNKYLLVGIMGKDY 180 AFD ASTTAFITQQGS++ISAIDLATQQVKWTMPVGKLPAGI MTPDNKYL+VGIMG DY Sbjct: 151 AFDNASTTAFITQQGSDQISAIDLATQQVKWTMPVGKLPAGIIMTPDNKYLMVGIMGADY 210 Query: 181 VQVIDWRTQKTVKTIRTGEGAHNFRAHGDKRYVYVSNRVSNTINILDLQTLESVGVISVP 240 V+VIDWRTQK VK I+TG GAHNFR GDKR+VYVSNRV+NTI+++D+ TLE+VG I VP Sbjct: 211 VEVIDWRTQKIVKKIKTGVGAHNFRGQGDKRFVYVSNRVANTISVVDMTTLENVGTIKVP 270 Query: 241 GGPDCMEVTDDGKTMWVTLRWVKKVAVIDLASKKITKIIPVGRSPHGIYFINRAADL 297 GGPDCMEVT DGKTMW TLRWVKKVAVIDLAS+ +TK+IPVGRSPHGIY NRA DL Sbjct: 271 GGPDCMEVTSDGKTMWATLRWVKKVAVIDLASRSVTKVIPVGRSPHGIYLHNRAPDL 327 >ref|YP_004753699.1| hypothetical protein CFU_3051 [Collimonas fungivorans Ter331] gb|AEK62876.1| conserved hypothetical signal peptide protein [Collimonas fungivorans Ter331] Length = 342 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 219/297 (73%), Positives = 261/297 (87%) Query: 1 VVVLNSGDATVTLLDQSTYKEINTFSVGKEPHHLMATPDNKSLIVASATGNQLIFLDPKT 60 VVVLNS DAT+TLLDQ+TYKEINTF VGKEPHHLM TPDNKSLIVA+ATGN L+FLDPK+ Sbjct: 46 VVVLNSRDATITLLDQTTYKEINTFPVGKEPHHLMPTPDNKSLIVAAATGNALLFLDPKS 105 Query: 61 GEVQRQLRGIIDPYQIGFSPDQKWFIANGLRLDRVDVYRYDGHNLDLAKRVRLAKTPSHI 120 G++Q Q++ I+DPYQIGFSP+QKWFIANGLRLDR+D+Y YDG NL LAKR+ L PSH+ Sbjct: 106 GQLQSQVKDIVDPYQIGFSPNQKWFIANGLRLDRIDIYGYDGKNLKLAKRLPLPSMPSHM 165 Query: 121 AFDAASTTAFITQQGSNEISAIDLATQQVKWTMPVGKLPAGIFMTPDNKYLLVGIMGKDY 180 AF A S AFIT QGS+E++A+DLATQ+VKWTMP+GK PAG++MTPDNKYLLVG+MG DY Sbjct: 166 AFTADSALAFITLQGSDELAAVDLATQKVKWTMPIGKQPAGVYMTPDNKYLLVGVMGSDY 225 Query: 181 VQVIDWRTQKTVKTIRTGEGAHNFRAHGDKRYVYVSNRVSNTINILDLQTLESVGVISVP 240 V V+DWRTQK VK I+TG+GAHNFR GD R+V+VSNRV+ +IN+LDL TLESVG I+VP Sbjct: 226 VAVVDWRTQKIVKKIKTGDGAHNFRPQGDNRHVFVSNRVAGSINVLDLNTLESVGSIAVP 285 Query: 241 GGPDCMEVTDDGKTMWVTLRWVKKVAVIDLASKKITKIIPVGRSPHGIYFINRAADL 297 GGPDCMEVT DGKTMWVT RW+K+V+V+DL ++K+ K I VGRSPHGIYF NRA++L Sbjct: 286 GGPDCMEVTADGKTMWVTQRWLKRVSVVDLGTRKVIKTIAVGRSPHGIYFNNRASEL 342 >ref|ZP_08272653.1| Surface antigen [Oxalobacteraceae bacterium IMCC9480] gb|EGF33876.1| Surface antigen [Oxalobacteraceae bacterium IMCC9480] Length = 286 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 212/285 (74%), Positives = 252/285 (88%) Query: 11 VTLLDQSTYKEINTFSVGKEPHHLMATPDNKSLIVASATGNQLIFLDPKTGEVQRQLRGI 70 ++L+DQ TYK +TFSVGKEPHHLMATPDNKSLIVASATG++L+FLDP TGE+QR+++ I Sbjct: 1 MSLIDQDTYKVTDTFSVGKEPHHLMATPDNKSLIVASATGDELVFLDPATGEIQRRVKNI 60 Query: 71 IDPYQIGFSPDQKWFIANGLRLDRVDVYRYDGHNLDLAKRVRLAKTPSHIAFDAASTTAF 130 DPYQIGFSPDQKWF+AN LRLDRVD+YRYDG ++ LAKRV L K PSH+ F A S+T F Sbjct: 61 ADPYQIGFSPDQKWFVANALRLDRVDIYRYDGKDMTLAKRVPLPKLPSHMVFTADSSTVF 120 Query: 131 ITQQGSNEISAIDLATQQVKWTMPVGKLPAGIFMTPDNKYLLVGIMGKDYVQVIDWRTQK 190 ITQQGS+EISAIDLATQ VKWTMPVGKLPAGI +TPD+KYL+VGIMG D V+VIDWRTQK Sbjct: 121 ITQQGSDEISAIDLATQTVKWTMPVGKLPAGITLTPDDKYLMVGIMGSDVVEVIDWRTQK 180 Query: 191 TVKTIRTGEGAHNFRAHGDKRYVYVSNRVSNTINILDLQTLESVGVISVPGGPDCMEVTD 250 VK I+ G G HNF D R+++VSNRVSNTIN++D++TLE+VG I+VPGGPDCME+T Sbjct: 181 VVKRIKAGAGTHNFHPKSDGRHMFVSNRVSNTINLIDMKTLENVGTINVPGGPDCMELTA 240 Query: 251 DGKTMWVTLRWVKKVAVIDLASKKITKIIPVGRSPHGIYFINRAA 295 DGKT+WVTLRW+KKVAVID+AS+K+ K+IPVGRSPHG+YFINRAA Sbjct: 241 DGKTLWVTLRWIKKVAVIDVASRKVIKLIPVGRSPHGVYFINRAA 285 >ref|YP_002005892.1| hypothetical protein RALTA_A1886 [Cupriavidus taiwanensis LMG 19424] emb|CAQ69827.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 328 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/295 (65%), Positives = 238/295 (80%), Gaps = 1/295 (0%) Query: 1 VVVLNSGDATVTLLDQSTYKEINTFSVGKEPHHLMATPDNKSLIVASATGNQLIFLDPKT 60 VV+LNSGDATVTL+D+ T K ++TF +GKEPHHL+ATPD+KSLIVA+A GN L+FLDP T Sbjct: 31 VVILNSGDATVTLIDKDTQKVLDTFPIGKEPHHLIATPDDKSLIVANAVGNDLVFLDPVT 90 Query: 61 GEVQRQLRGIIDPYQIGFSPDQKWFIANGLRLDRVDVYRYDGHNLDLAKRVRLAKTPSHI 120 G+VQ+++ I DPYQIGFSPDQKWF+A G RLDRVDVYR+DG L LAK+ LAKTPSHI Sbjct: 91 GKVQQRVPNIDDPYQIGFSPDQKWFVATGNRLDRVDVYRWDGKALKLAKQYPLAKTPSHI 150 Query: 121 AFDAASTTAFITQQGSNEISAIDLATQQVKWTMPVGKLPAGIFMTPDNKYLLVGIMGKDY 180 AF A S AFIT Q SNEI+AIDL TQ V W M G PAGI++TPD KYLLVG+ G DY Sbjct: 151 AFTADSRIAFITLQDSNEIAAIDLVTQNVMWRMETGSAPAGIWVTPDQKYLLVGMTGADY 210 Query: 181 VQVIDWRTQKTVKTIRTGEGAHNFRAHGDKRYVYVSNRVSNTINILDLQTLESVGVIS-V 239 V VIDWRT+ VK I+TG+GAHNFRA GD+R++++SNRV+ +I+I+D QTL VG I+ + Sbjct: 211 VAVIDWRTRTVVKQIQTGKGAHNFRAVGDRRHLFLSNRVTGSISIIDQQTLSKVGDITGL 270 Query: 240 PGGPDCMEVTDDGKTMWVTLRWVKKVAVIDLASKKITKIIPVGRSPHGIYFINRA 294 P GPD ME+T DGKT+WVT RW + V ++D+AS+K+ K + VGRSPHGIYF RA Sbjct: 271 PPGPDDMELTADGKTLWVTFRWARSVGLVDVASRKLVKTVRVGRSPHGIYFRTRA 325 >ref|YP_726805.1| cytochrome d1 heme subunit [Ralstonia eutropha H16] emb|CAJ93437.1| cytochrome d1 heme domain [Ralstonia eutropha H16] Length = 332 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/295 (64%), Positives = 239/295 (81%), Gaps = 1/295 (0%) Query: 1 VVVLNSGDATVTLLDQSTYKEINTFSVGKEPHHLMATPDNKSLIVASATGNQLIFLDPKT 60 VV+LNSGDATVTL+D++T K + TF +GKEPHHL+ATPD+KSLIVA+A GN L+FLDP + Sbjct: 35 VVILNSGDATVTLIDKNTQKVLETFPIGKEPHHLIATPDDKSLIVANAVGNDLVFLDPVS 94 Query: 61 GEVQRQLRGIIDPYQIGFSPDQKWFIANGLRLDRVDVYRYDGHNLDLAKRVRLAKTPSHI 120 G+VQ+++ + DPYQIGFSPDQKWF+A G RLDRVD+YR+DG L LAK+ LAKTPSHI Sbjct: 95 GKVQQRVPNVDDPYQIGFSPDQKWFVATGNRLDRVDLYRWDGKALKLAKQFPLAKTPSHI 154 Query: 121 AFDAASTTAFITQQGSNEISAIDLATQQVKWTMPVGKLPAGIFMTPDNKYLLVGIMGKDY 180 AF A S AFIT Q SNE++AIDL TQ V W M G PAGI++TPD KYLLVG+ G DY Sbjct: 155 AFTADSRIAFITLQDSNEVAAIDLVTQNVMWRMETGSAPAGIWVTPDQKYLLVGMTGADY 214 Query: 181 VQVIDWRTQKTVKTIRTGEGAHNFRAHGDKRYVYVSNRVSNTINILDLQTLESVGVIS-V 239 V VIDWRT+ VK I+TG+GAHNFRA GDKR++++SNRV+++I+I+D QTL VG I+ + Sbjct: 215 VAVIDWRTRTVVKQIQTGKGAHNFRAVGDKRHLFLSNRVTSSISIIDQQTLAKVGDITGL 274 Query: 240 PGGPDCMEVTDDGKTMWVTLRWVKKVAVIDLASKKITKIIPVGRSPHGIYFINRA 294 P GPD ME+T DGKT+WVT RW + V ++D+AS+K+ K + VGRSPHGIYF RA Sbjct: 275 PPGPDDMELTADGKTLWVTFRWARSVGLVDVASRKLVKTVRVGRSPHGIYFRTRA 329