BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0033.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775054.1| FKBP-type peptidyl-prolyl cis-trans isomeras...   189   1e-46
ref|YP_001099127.1| peptidyl-prolyl cis-trans isomerase [Hermini...   176   1e-42
ref|YP_004753700.1| peptidyl-prolyl cis-trans isomerase [Collimo...   167   6e-40
ref|YP_001352414.1| peptidyl-prolyl cis-trans isomerase [Janthin...   165   3e-39
ref|YP_003753187.1| peptidyl-prolyl cis-trans isomerase [Ralston...   159   1e-37

>ref|YP_003775054.1| FKBP-type peptidyl-prolyl cis-trans isomerase [Herbaspirillum
          seropedicae SmR1]
 emb|CAM32609.1| FKBP-type peptidyl-prolyl cis-trans isomerase I protein
          [Herbaspirillum seropedicae]
 gb|ADJ63146.1| FKBP-type peptidyl-prolyl cis-trans isomerase I protein
          [Herbaspirillum seropedicae SmR1]
          Length = 118

 Score =  189 bits (480), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/99 (90%), Positives = 95/99 (95%)

Query: 1  MSTIATSSGLQYEEIQVGAGDEAKAGNHVSVHYTGWLQNPDGSAGSKFDSSKDRNDPFAF 60
          MSTI T+SGLQYEEI +GAGDEAKAG+HV+VHYTGWLQN DGSAGSKFDSSKDRNDPFAF
Sbjct: 1  MSTITTASGLQYEEINIGAGDEAKAGSHVTVHYTGWLQNDDGSAGSKFDSSKDRNDPFAF 60

Query: 61 PLGAGHVIKGWDEGVQGMKVGGVRKLIIPAALGYGARGA 99
          PLGAGHVIKGWDEGVQGMKVGG RKLIIPA+LGYGARGA
Sbjct: 61 PLGAGHVIKGWDEGVQGMKVGGTRKLIIPASLGYGARGA 99


>ref|YP_001099127.1| peptidyl-prolyl cis-trans isomerase [Herminiimonas
          arsenicoxydans]
 emb|CAL61000.1| Peptidyl-prolyl cis-trans isomerase [Herminiimonas
          arsenicoxydans]
          Length = 118

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 90/99 (90%)

Query: 1  MSTIATSSGLQYEEIQVGAGDEAKAGNHVSVHYTGWLQNPDGSAGSKFDSSKDRNDPFAF 60
          M+T +TSSGLQYE+  VG G EA AGNHV+VHYTGWLQNPDGSAG+KFDSSKDRNDPF F
Sbjct: 1  MATTSTSSGLQYEDKVVGDGAEAAAGNHVTVHYTGWLQNPDGSAGTKFDSSKDRNDPFQF 60

Query: 61 PLGAGHVIKGWDEGVQGMKVGGVRKLIIPAALGYGARGA 99
          PLGAGHVIKGWDEGVQGMK+GG R LIIPA+LGYGARGA
Sbjct: 61 PLGAGHVIKGWDEGVQGMKIGGTRTLIIPASLGYGARGA 99


>ref|YP_004753700.1| peptidyl-prolyl cis-trans isomerase [Collimonas fungivorans
          Ter331]
 gb|AEK62877.1| peptidyl-prolyl cis-trans isomerase (rotamase) [Collimonas
          fungivorans Ter331]
          Length = 118

 Score =  167 bits (422), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 80/99 (80%), Positives = 85/99 (85%)

Query: 1  MSTIATSSGLQYEEIQVGAGDEAKAGNHVSVHYTGWLQNPDGSAGSKFDSSKDRNDPFAF 60
          MST  T SGLQYE++ VG G EAKAG+HV+VHYTGWLQN DGSAG KFDSSKDR DPF F
Sbjct: 1  MSTTTTVSGLQYEDVIVGDGAEAKAGDHVTVHYTGWLQNSDGSAGKKFDSSKDRGDPFEF 60

Query: 61 PLGAGHVIKGWDEGVQGMKVGGVRKLIIPAALGYGARGA 99
          PL AGHVIKGWDEGVQGMK+GG R LIIPAALGYG RGA
Sbjct: 61 PLNAGHVIKGWDEGVQGMKIGGTRTLIIPAALGYGPRGA 99


>ref|YP_001352414.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp.
          Marseille]
 gb|ABR90039.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp.
          Marseille]
          Length = 118

 Score =  165 bits (417), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/99 (79%), Positives = 87/99 (87%)

Query: 1  MSTIATSSGLQYEEIQVGAGDEAKAGNHVSVHYTGWLQNPDGSAGSKFDSSKDRNDPFAF 60
          M+T +TSSGLQYE+  VG G EA AG HV+VHYTGWLQN DGSAG+KFDSSKDR DPF F
Sbjct: 1  MATTSTSSGLQYEDKVVGDGAEATAGAHVTVHYTGWLQNDDGSAGAKFDSSKDRGDPFQF 60

Query: 61 PLGAGHVIKGWDEGVQGMKVGGVRKLIIPAALGYGARGA 99
          PLGAGHVIKGWDEGVQGMK+GG R LIIP++LGYGARGA
Sbjct: 61 PLGAGHVIKGWDEGVQGMKIGGTRTLIIPSSLGYGARGA 99


>ref|YP_003753187.1| peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum
          PSI07]
 emb|CAQ57092.1| fkbp-type peptidyl-prolyl cis-trans isomerase
          (ppiase)(immunophilin) protein [Ralstonia solanacearum
          MolK2]
 emb|CBJ51924.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum
          PSI07]
 emb|CCA82775.1| peptidyl-prolyl cis-trans isomerase [blood disease bacterium
          R229]
          Length = 117

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 84/99 (84%), Gaps = 1/99 (1%)

Query: 1  MSTIATSSGLQYEEIQVGAGDEAKAGNHVSVHYTGWLQNPDGSAGSKFDSSKDRNDPFAF 60
          M+T  T SGLQYE++ VG G EA AG +V+VHYTGWL   +G AG KFDSSKDRNDPFAF
Sbjct: 1  MTTTTTPSGLQYEDVTVGDGAEATAGKYVTVHYTGWLYE-NGQAGRKFDSSKDRNDPFAF 59

Query: 61 PLGAGHVIKGWDEGVQGMKVGGVRKLIIPAALGYGARGA 99
          PLGAGHVIKGWDEGVQGMKVGG RKLIIPA LGYGARGA
Sbjct: 60 PLGAGHVIKGWDEGVQGMKVGGTRKLIIPAELGYGARGA 98