BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0027.p (534 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775049.1| branched-chain amino acid ABC transporter pe... 490 e-136 ref|YP_549162.1| extracellular ligand-binding receptor [Polaromo... 437 e-120 ref|YP_982653.1| extracellular ligand-binding receptor [Polaromo... 436 e-120 ref|YP_003447741.1| branched-chain amino acid transport system s... 402 e-110 ref|YP_420841.1| ABC-type branched-chain amino acid transport sy... 400 e-109 >ref|YP_003775049.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63141.1| ABC-type branched-chain amino acid transport systems periplasmic component, protein [Herbaspirillum seropedicae SmR1] Length = 413 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 239/379 (63%), Positives = 301/379 (79%), Gaps = 4/379 (1%) Query: 24 AENIRIGEINSYTGVAQSSQAYRNGADLAVAEINAGGGLLGRNLELISRDDSGSPDEAVR 83 AE IRIGEINS ++ + QAYRNG LA+ +INA GG+ GR L+L+ R+D G D+A R Sbjct: 35 AEAIRIGEINSRHRLSTAGQAYRNGLALALEQINAAGGVGGRPLQLVVREDDGDADQAAR 94 Query: 84 HAEALIKTDRVDVLTGSMLSNVALAVAKTAASEKKLFVVGDALSDAITLDKGNRYTFRLR 143 +A ALI D V+VLTGSMLS+VALAV++ AA + + VVGDALSDAITLDKGNRYTFR+R Sbjct: 95 NARALISQDHVEVLTGSMLSDVALAVSREAARGRTVLVVGDALSDAITLDKGNRYTFRVR 154 Query: 144 PSTYTQAAMLAEAAAKLPGRRWAIVAPNYEYGQSAVANFKLLLKERRPDIEFVAEQWPAL 203 PSTY QAAMLAE AA+LPGRRWA+VAPNYEYGQSAVA+FKLLLK+ RPD+EFV++QWPAL Sbjct: 155 PSTYMQAAMLAEQAARLPGRRWAVVAPNYEYGQSAVASFKLLLKQARPDVEFVSDQWPAL 214 Query: 204 GKMRAEVVVKALRQARPDAIFNAAFGSDLQQFAEEGSRQGLFAATTVFSM-SAG-PTLGD 261 GK++A+ V +A+RQ+RPD IFNA FG DLQ+F + G+RQ LF V SM SAG P+L Sbjct: 215 GKIKADDVARAIRQSRPDGIFNATFGEDLQKFVQAGNRQQLFEGVRVVSMASAGAPSLDP 274 Query: 262 VLAQYEGTKNWVVLGYPSEQLATPEHQRFREAYLKRFNDRPLLQAVFGYSTVMSIAAGIK 321 +Q E ++W+ +GYP +Q++ PEHQRF EAYLKRF++RP L AVFGY+T+M+IAAG+K Sbjct: 275 --SQSEAIRDWLAIGYPWDQVSLPEHQRFLEAYLKRFSERPQLSAVFGYTTMMAIAAGLK 332 Query: 322 KAGSVDSEKLVTAMRGLGVETPVGPITFRAHDQQSSMGAFVATLVCKDGRSNMTEWHYLD 381 K+ D E LV AMRGL +P+GP++FRA DQQ+S+GAFV + KDGRS+M +W YLD Sbjct: 333 KSEGGDGEVLVEAMRGLQFGSPLGPVSFRALDQQASLGAFVGLVSQKDGRSSMRDWRYLD 392 Query: 382 GARYMPDDNYIKGRRPASA 400 GA Y+P Y++ RRPASA Sbjct: 393 GAAYLPPPAYVRSRRPASA 411 >ref|YP_549162.1| extracellular ligand-binding receptor [Polaromonas sp. JS666] gb|ABE44264.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Polaromonas sp. JS666] Length = 405 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/377 (55%), Positives = 265/377 (70%), Gaps = 2/377 (0%) Query: 27 IRIGEINSYTGVAQSSQAYRNGADLAVAEINAGGGLLGRNLELISRDDSGSPDEAVRHAE 86 I+IGEINSY+ + Q +Q YR G LAV E+N GGLLGR +E+I+RDD+G P+EA+RHA Sbjct: 30 IKIGEINSYSTIPQFTQPYRQGWQLAVEEVNVAGGLLGRKVEVIARDDAGKPEEALRHAI 89 Query: 87 ALIKTDRVDVLTGSMLSNVALAVAKTAASEKKLFVVGDALSDAITLDKGNRYTFRLRPST 146 L ++VDVL G LSNV LA+A A K+++V + L+DA+ DKGNRYTFRLRPST Sbjct: 90 ELTSKEKVDVLAGGFLSNVGLALADHAQKNKRVYVASEPLTDALVWDKGNRYTFRLRPST 149 Query: 147 YTQAAMLAEAAAKLPGRRWAIVAPNYEYGQSAVANFKLLLKERRPDIEFVAEQWPALGKM 206 Y QAAML E AAKLP RRWA +APNYEYGQSAVA+FK LLK RRPD+EFV EQWPALGK+ Sbjct: 150 YMQAAMLVEEAAKLPARRWATIAPNYEYGQSAVASFKELLKARRPDVEFVGEQWPALGKL 209 Query: 207 RAEVVVKALRQARPDAIFNAAFGSDLQQFAEEGSRQGLFAATTVFSMSAG-PTLGDVLAQ 265 A ++A Q++PDAIFN FG+DL + EG+++G+F T V S+ +G P DVL Sbjct: 210 DAGTTLQATMQSKPDAIFNVTFGADLAKLVREGNQRGIFPKTPVVSLLSGEPEYLDVLKD 269 Query: 266 YEGTKNWVVLGYPSEQLATPEHQRFREAYLKRFNDRPLLQAVFGYSTVMSIAAGIKKAGS 325 E K W+V GYP +Q+ + EH F Y +RFN+ P + +V GY+T+ +I A IKKA S Sbjct: 270 -ETPKGWIVTGYPWDQIDSQEHASFAANYYRRFNEYPKVGSVVGYATMQAIFAAIKKANS 328 Query: 326 VDSEKLVTAMRGLGVETPVGPITFRAHDQQSSMGAFVATLVCKDGRSNMTEWHYLDGARY 385 D+EKLVTA+RGL TP GP FRA D QS+MGA+V L + + M +W Y DG Y Sbjct: 329 TDNEKLVTALRGLKFSTPFGPAEFRALDHQSTMGAYVGKLDLRGHKGTMVQWRYADGKAY 388 Query: 386 MPDDNYIKGRRPASAFQ 402 +P D Y+K RRP A + Sbjct: 389 LPSDAYVKARRPPDAMK 405 >ref|YP_982653.1| extracellular ligand-binding receptor [Polaromonas naphthalenivorans CJ2] gb|ABM37732.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Polaromonas naphthalenivorans CJ2] Length = 411 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/383 (54%), Positives = 268/383 (69%), Gaps = 2/383 (0%) Query: 21 AAQAENIRIGEINSYTGVAQSSQAYRNGADLAVAEINAGGGLLGRNLELISRDDSGSPDE 80 +A + I+IGEINSY+ + Q +Q YR G LAV EIN GGLLGR +E+I+RDD+G P+E Sbjct: 30 SASNKPIKIGEINSYSTMPQFTQPYRQGWQLAVEEINLSGGLLGRKVEVIARDDAGKPEE 89 Query: 81 AVRHAEALIKTDRVDVLTGSMLSNVALAVAKTAASEKKLFVVGDALSDAITLDKGNRYTF 140 A+RHA L ++VDVL G LSNV LA+A A ++L++ + L+DAI DKGNRYTF Sbjct: 90 ALRHAIELTSREKVDVLAGGYLSNVGLALADHAQKNRRLYIASEPLTDAIVWDKGNRYTF 149 Query: 141 RLRPSTYTQAAMLAEAAAKLPGRRWAIVAPNYEYGQSAVANFKLLLKERRPDIEFVAEQW 200 RLRPSTY QAAML E AAK+P RRWA +APNYEYGQSAVA+F+ LLK RRPD+EFV EQW Sbjct: 150 RLRPSTYMQAAMLVEEAAKMPARRWATIAPNYEYGQSAVASFRELLKARRPDVEFVGEQW 209 Query: 201 PALGKMRAEVVVKALRQARPDAIFNAAFGSDLQQFAEEGSRQGLFAATTVFSMSAG-PTL 259 PALGK+ A ++A+ Q++PDAIFN FG+DL + EG+++G+F V SM +G P Sbjct: 210 PALGKLEAGTALQAMMQSKPDAIFNVTFGADLAKLVREGNQRGIFPRVPVVSMLSGEPEY 269 Query: 260 GDVLAQYEGTKNWVVLGYPSEQLATPEHQRFREAYLKRFNDRPLLQAVFGYSTVMSIAAG 319 DVL E K W+V GYP +Q+ + EH F Y +RF + P + +V GYST+ +I AG Sbjct: 270 LDVLKD-ETPKGWIVTGYPWDQIDSQEHASFAANYYRRFKEYPKVGSVVGYSTMQAIFAG 328 Query: 320 IKKAGSVDSEKLVTAMRGLGVETPVGPITFRAHDQQSSMGAFVATLVCKDGRSNMTEWHY 379 IKKA S+D+EKLV +RGL TP GP FRA DQQS+MGA+V L + + M W Y Sbjct: 329 IKKANSLDNEKLVVTLRGLKFSTPFGPAEFRAIDQQSTMGAYVGKLDMRGNKGTMVNWRY 388 Query: 380 LDGARYMPDDNYIKGRRPASAFQ 402 DG Y+P D Y+K RRPA A + Sbjct: 389 ADGKAYLPSDAYVKARRPADAMK 411 >ref|YP_003447741.1| branched-chain amino acid transport system substrate-binding protein [Azospirillum sp. B510] dbj|BAI71197.1| branched-chain amino acid transport system substrate-binding protein [Azospirillum sp. B510] Length = 418 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/375 (52%), Positives = 257/375 (68%), Gaps = 3/375 (0%) Query: 27 IRIGEINSYTGVAQSSQAYRNGADLAVAEINAGGGLLGR-NLELISRDDSGSPDEAVRHA 85 +R+GEINSYTG+ + YR G LA+ EINA GG++G L+++S DD+G PD+AVR A Sbjct: 45 VRVGEINSYTGLPAFTIPYRQGWQLALEEINAAGGVIGCCELQVVSHDDAGKPDDAVRVA 104 Query: 86 EALIKTDRVDVLTGSMLSNVALAVAKTAASEKKLFVVGDALSDAITLDKGNRYTFRLRPS 145 + ++ + +DVL G+ S++ LAVA AA K FV + L+DAIT KGNRYTFRLRPS Sbjct: 105 QEMVSNEAIDVLAGTYFSHIGLAVADFAARNKIPFVAAEPLTDAITWSKGNRYTFRLRPS 164 Query: 146 TYTQAAMLAEAAAKLPGRRWAIVAPNYEYGQSAVANFKLLLKERRPDIEFVAEQWPALGK 205 TY QAAML E AAKLP +RWA VAPNYEYGQSAVA FK +L E+RPD+EFVAEQWPA GK Sbjct: 165 TYMQAAMLVEEAAKLPAKRWATVAPNYEYGQSAVAWFKQMLSEKRPDVEFVAEQWPAQGK 224 Query: 206 MRAEVVVKALRQARPDAIFNAAFGSDLQQFAEEGSRQGLFAATTVFSMSAG-PTLGDVLA 264 + A V+AL A+PDAIFN FG+DL +F EG +GLF V S+ G P + + Sbjct: 225 LEAGPTVQALAAAKPDAIFNVTFGADLAKFVREGEGRGLFRNRKVVSLLTGEPEYLEPMK 284 Query: 265 QYEGTKNWVVLGYPSEQLATPEHQRFREAYLKRFNDRPLLQAVFGYSTVMSIAAGIKKAG 324 + E + W+V GYP +Q+ TP H+ F AY RF + P ++ GY T+ ++AAGI KA Sbjct: 285 E-EAPEGWIVTGYPWDQIDTPAHKAFVAAYTARFKESPKAGSLVGYITMKAVAAGITKAK 343 Query: 325 SVDSEKLVTAMRGLGVETPVGPITFRAHDQQSSMGAFVATLVCKDGRSNMTEWHYLDGAR 384 S ++E +V A+ GL +++PVGP+TFRA D Q++MGA+V KDGR M +W Y DGA Sbjct: 344 SANAEPIVDALAGLTIDSPVGPVTFRASDHQATMGAYVGVTTVKDGRGTMKDWRYADGAN 403 Query: 385 YMPDDNYIKGRRPAS 399 Y+P D + RPA Sbjct: 404 YLPPDEAARKMRPAE 418 >ref|YP_420841.1| ABC-type branched-chain amino acid transport systems [Magnetospirillum magneticum AMB-1] dbj|BAE50282.1| ABC-type branched-chain amino acid transport systems [Magnetospirillum magneticum AMB-1] Length = 411 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/379 (51%), Positives = 259/379 (68%), Gaps = 2/379 (0%) Query: 10 AALALGLAMTVAAQAENIRIGEINSYTGVAQSSQAYRNGADLAVAEINAGGGLLGRNLEL 69 AAL G M A+ A+ I+IGEINSYT + + YR+G LA+ EINA GG+ G+ LE+ Sbjct: 22 AALMAGSQMGTASAADTIKIGEINSYTSLPAFTLPYRSGWQLALDEINAAGGINGKKLEV 81 Query: 70 ISRDDSGSPDEAVRHAEALIKTDRVDVLTGSMLSNVALAVAKTAASEKKLFVVGDALSDA 129 ISRDD G P +AV A L+ + V VL G+ S++ LAV+ A K +FV + L+DA Sbjct: 82 ISRDDGGKPGDAVTAANELVSRENVSVLFGTFFSHIGLAVSDFANQRKIVFVAAEPLTDA 141 Query: 130 ITLDKGNRYTFRLRPSTYTQAAMLAEAAAKLPGRRWAIVAPNYEYGQSAVANFKLLLKER 189 +T++KGNRYTFRLRP TY QAAML + AAKLP + WA VAPNYEYGQ AV FK L+ + Sbjct: 142 LTMEKGNRYTFRLRPGTYMQAAMLVDQAAKLPAKTWATVAPNYEYGQVAVKVFKELMSAK 201 Query: 190 RPDIEFVAEQWPALGKMRAEVVVKALRQARPDAIFNAAFGSDLQQFAEEGSRQGLFAATT 249 RPDI++V EQWPA+GK+ V+AL +A P+AIFN FG+DL +F EG+ +GLF + Sbjct: 202 RPDIKWVDEQWPAMGKIDGGATVQALARAEPEAIFNVTFGADLTKFIREGNTRGLFKNRS 261 Query: 250 VFSMSAG-PTLGDVLAQYEGTKNWVVLGYPSEQLATPEHQRFREAYLKRFNDRPLLQAVF 308 V S+ G P D L E W+V GYP EQ+ TPEH+ F +AY +FND P L +V Sbjct: 262 VVSLLTGEPEYLDPLGD-ETPSGWIVSGYPWEQIKTPEHEAFLKAYKAKFNDYPRLGSVV 320 Query: 309 GYSTVMSIAAGIKKAGSVDSEKLVTAMRGLGVETPVGPITFRAHDQQSSMGAFVATLVCK 368 GY+T+ ++A I+KAGSVD++KL+ A GL +++P+GPITFRA D QS+MG ++ K Sbjct: 321 GYNTMKAVAEMIRKAGSVDTDKLIAAGEGLKIDSPLGPITFRAEDHQSTMGGYIGKTAMK 380 Query: 369 DGRSNMTEWHYLDGARYMP 387 DG+ M +WHY +GA Y+P Sbjct: 381 DGKGMMVDWHYANGADYLP 399