BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0022.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001352407.1| electron transport complex protein RnfB [Jan... 340 9e-92 ref|YP_001099120.1| putative electron transport complex protein:... 338 5e-91 ref|YP_004753168.1| putative electron transport complex protein:... 335 3e-90 ref|YP_003775042.1| ferredoxin [4Fe-4S]-type protein [Herbaspiri... 333 9e-90 ref|ZP_08275218.1| putative NADH:ubiquinone oxidoreductase, subu... 303 1e-80 >ref|YP_001352407.1| electron transport complex protein RnfB [Janthinobacterium sp. Marseille] gb|ABR89968.1| electron transport complex protein RnfB [Janthinobacterium sp. Marseille] Length = 233 Score = 340 bits (873), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 179/225 (79%), Positives = 194/225 (86%) Query: 1 VSSSAVLTLADQIENLLPQTQCGKCGYPACRPYAEAIADGSAGYNQCPPGGAEGVARLAQ 60 VS + +LADQ+E+LLPQTQC KCGYPACRPYAEAIADGSA YNQCPPGG EGVARLA Sbjct: 4 VSPPSQKSLADQLEDLLPQTQCTKCGYPACRPYAEAIADGSANYNQCPPGGIEGVARLAH 63 Query: 61 LLARPLLPLNPANGLERPRTRAVIDEAACIGCTLCIQACPVDAIVGAAKQMHTVQPDLCT 120 LL +P++P+NP NG ERPR AVIDE+ CIGCTLCIQACPVDAIVGAAKQMHT+ DLCT Sbjct: 64 LLGKPVIPINPVNGHERPRPVAVIDESLCIGCTLCIQACPVDAIVGAAKQMHTIVNDLCT 123 Query: 121 GCDLCVAPCPVDCIAMVEVTPGLTGWQAWSQEQADAARARHDFRSFRLRREKRENDDRLA 180 GCDLCVAPCPVDCIAMVEVTPG TGW AWSQ QAD ARARHDFR+ RL+REK END RLA Sbjct: 124 GCDLCVAPCPVDCIAMVEVTPGKTGWDAWSQAQADDARARHDFRTQRLQREKEENDARLA 183 Query: 181 AKAAAKLKEVEAADALTPAEKAEQDRKKAIIQAAIERARLKKEQA 225 AKAAAKL+ V+A + EKAEQ RKKAIIQAAIERARLKKEQA Sbjct: 184 AKAAAKLQAVQAETPASEEEKAEQARKKAIIQAAIERARLKKEQA 228 >ref|YP_001099120.1| putative electron transport complex protein: ferredoxin subunit (RfnB) [Herminiimonas arsenicoxydans] emb|CAL60993.1| Putative electron transport complex, ferredoxin subunit [Herminiimonas arsenicoxydans] Length = 239 Score = 338 bits (866), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 174/230 (75%), Positives = 197/230 (85%) Query: 1 VSSSAVLTLADQIENLLPQTQCGKCGYPACRPYAEAIADGSAGYNQCPPGGAEGVARLAQ 60 VSS +LADQ+E+LLPQTQC KCGYPACRPYAEA+ADG A YNQCPPGG EGVARLA+ Sbjct: 10 VSSPTEKSLADQLEDLLPQTQCTKCGYPACRPYAEAMADGRASYNQCPPGGIEGVARLAR 69 Query: 61 LLARPLLPLNPANGLERPRTRAVIDEAACIGCTLCIQACPVDAIVGAAKQMHTVQPDLCT 120 +L + ++P+NP NG+ERPR AVIDE+ CIGCTLCIQACPVDAIVGAAKQMHT+ DLCT Sbjct: 70 VLGKKVIPINPVNGVERPRPVAVIDESLCIGCTLCIQACPVDAIVGAAKQMHTIVTDLCT 129 Query: 121 GCDLCVAPCPVDCIAMVEVTPGLTGWQAWSQEQADAARARHDFRSFRLRREKRENDDRLA 180 GCDLCVAPCPVDCIAMVE TPG TGW AWSQ +ADAARARHDFR+ RL+REK EN+ RLA Sbjct: 130 GCDLCVAPCPVDCIAMVEYTPGKTGWDAWSQAEADAARARHDFRTLRLQREKEENEARLA 189 Query: 181 AKAAAKLKEVEAADALTPAEKAEQDRKKAIIQAAIERARLKKEQAAVNDQ 230 AKAAAKL+ +++ L+ EK EQ RKKAIIQAAIERARLKKEQA +DQ Sbjct: 190 AKAAAKLQALQSETPLSEEEKNEQARKKAIIQAAIERARLKKEQAEKDDQ 239 >ref|YP_004753168.1| putative electron transport complex protein: ferredoxin subunit [Collimonas fungivorans Ter331] gb|AEK62345.1| putative electron transport complex protein: ferredoxin subunit [Collimonas fungivorans Ter331] Length = 302 Score = 335 bits (860), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 177/217 (81%), Positives = 191/217 (88%) Query: 10 ADQIENLLPQTQCGKCGYPACRPYAEAIADGSAGYNQCPPGGAEGVARLAQLLARPLLPL 69 AD+IE LLPQTQC KCGYPACRPYAEAIADGSAGYNQCPPGG +GVARLAQLL +P++PL Sbjct: 78 ADRIEALLPQTQCTKCGYPACRPYAEAIADGSAGYNQCPPGGQQGVARLAQLLQQPVIPL 137 Query: 70 NPANGLERPRTRAVIDEAACIGCTLCIQACPVDAIVGAAKQMHTVQPDLCTGCDLCVAPC 129 NPANG ERPR AVIDEAACIGCTLCIQACPVDAI GAAKQMHTV DLCTGCDLC+APC Sbjct: 138 NPANGAERPRPLAVIDEAACIGCTLCIQACPVDAIAGAAKQMHTVINDLCTGCDLCLAPC 197 Query: 130 PVDCIAMVEVTPGLTGWQAWSQEQADAARARHDFRSFRLRREKRENDDRLAAKAAAKLKE 189 PVDCI MV+V+ TGW AW+Q+QADAARARHDFR+ RL REKREND+RLAAKAA KLK Sbjct: 198 PVDCITMVDVSGTDTGWDAWTQQQADAARARHDFRAVRLAREKRENDERLAAKAAEKLKA 257 Query: 190 VEAADALTPAEKAEQDRKKAIIQAAIERARLKKEQAA 226 V A A TP ++AEQ RKKAIIQAAIERARLKKEQ A Sbjct: 258 VAAESAATPEQQAEQQRKKAIIQAAIERARLKKEQQA 294 >ref|YP_003775042.1| ferredoxin [4Fe-4S]-type protein [Herbaspirillum seropedicae SmR1] gb|ADJ63134.1| ferredoxin [4Fe-4S]-type protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 333 bits (855), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 181/231 (78%), Positives = 198/231 (85%), Gaps = 2/231 (0%) Query: 1 VSSSAVLTLADQIENLLPQTQCGKCGYPACRPYAEAIADGSAGYNQCPPGGAEGVARLAQ 60 ++SSA +LAD++E+LLPQTQC KCGYPACRPYAEAIA+G A YNQCPPGG EGVARLAQ Sbjct: 6 ITSSA--SLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVARLAQ 63 Query: 61 LLARPLLPLNPANGLERPRTRAVIDEAACIGCTLCIQACPVDAIVGAAKQMHTVQPDLCT 120 LL RP++PLNP +G E+PR AVIDEA CIGCTLCIQACPVDAI GAAKQMHTV LCT Sbjct: 64 LLGRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDALCT 123 Query: 121 GCDLCVAPCPVDCIAMVEVTPGLTGWQAWSQEQADAARARHDFRSFRLRREKRENDDRLA 180 GCDLCVAPCPVDCI+MVEVTPG TGWQAW QEQADAARARH +R+ RLRR+K END RLA Sbjct: 124 GCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDARLA 183 Query: 181 AKAAAKLKEVEAADALTPAEKAEQDRKKAIIQAAIERARLKKEQAAVNDQP 231 AKAAAKLKEVEAA A TP E+AE RKKAIIQAA+ERARLKK QA P Sbjct: 184 AKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQASHP 234 >ref|ZP_08275218.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Oxalobacteraceae bacterium IMCC9480] gb|EGF31313.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 166/226 (73%), Positives = 190/226 (84%), Gaps = 1/226 (0%) Query: 1 VSSSAVLTLADQIENLLPQTQCGKCGYPACRPYAEAIADGSAGYNQCPPGGAEGVARLAQ 60 VS + +LAD+IE+ LPQTQC KCGY CRPYAEAIADGSAG NQCPPGG EG+ RLA Sbjct: 14 VSHPVMKSLADRIEDALPQTQCTKCGYAGCRPYAEAIADGSAGINQCPPGGQEGIVRLAS 73 Query: 61 LLARPLLPLNPANGLERPRTRAVIDEAACIGCTLCIQACPVDAIVGAAKQMHTVQPDLCT 120 LL RP++ LNP +G+ERPR A+IDEA CIGCTLCIQACPVDAI+GA KQMHT+ DLCT Sbjct: 74 LLDRPVIALNPVHGIERPRPVAIIDEALCIGCTLCIQACPVDAILGAPKQMHTILADLCT 133 Query: 121 GCDLCVAPCPVDCIAMVEVTPGLTGWQAWSQEQADAARARHDFRSFRLRREKRENDDRLA 180 GCDLCVAPCPVDCIAMV VT TGWQAW+++QAD ARARHDFR+ RL RE+R+ND RL Sbjct: 134 GCDLCVAPCPVDCIAMVAVT-TTTGWQAWTEQQADEARARHDFRAARLLRERRDNDARLL 192 Query: 181 AKAAAKLKEVEAADALTPAEKAEQDRKKAIIQAAIERARLKKEQAA 226 AKAAAKLKEVE+A L+ A+ AE+DRKKAIIQAAIERAR+K+E A Sbjct: 193 AKAAAKLKEVESAPTLSAADSAERDRKKAIIQAAIERARIKRETDA 238