BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0017.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775037.1| periplasmic cytochrome c553 protein [Herbasp...   160   4e-38
ref|YP_001352402.1| cytochrome c553 [Janthinobacterium sp. Marse...   159   2e-37
ref|YP_001099115.1| putative cytochrome c [Herminiimonas arsenic...   157   5e-37
emb|CBJ38158.1| cytochrome c, class IC [Ralstonia solanacearum C...   148   2e-34
ref|YP_295247.1| cytochrome c, class I [Ralstonia eutropha JMP13...   148   2e-34

>ref|YP_003775037.1| periplasmic cytochrome c553 protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63129.1| periplasmic cytochrome c553 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 106

 Score =  160 bits (406), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/106 (72%), Positives = 88/106 (83%), Gaps = 2/106 (1%)

Query: 1   MKKLFVLLALAGIASAASAVDLAGNT--GKVNVSMCIGCHGIPGYKATFPEVYQVPMLGG 58
           MKK  V LAL G+  +ASA D+ GN    +  VSMCIGCHGIPGYKA++PEVYQVPMLGG
Sbjct: 1   MKKHLVFLALVGVVGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGG 60

Query: 59  QSEKYIENALKAYQKGERKHPSMQGIAGSLSDKDIAELAAYYSQQK 104
           QS  YIE+AL+AYQKGERKHPSM G+A SLSD+DIA+LAAYYSQQK
Sbjct: 61  QSAAYIESALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK 106


>ref|YP_001352402.1| cytochrome c553 [Janthinobacterium sp. Marseille]
 gb|ABR91511.1| cytochrome c553 [Janthinobacterium sp. Marseille]
          Length = 106

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 89/106 (83%), Gaps = 2/106 (1%)

Query: 1   MKKLFVLLALAGIASAASAVDLAGNT--GKVNVSMCIGCHGIPGYKATFPEVYQVPMLGG 58
           MKKLF LLALAG+A   +A ++ G+   G   VSMCIGCHGIPGYKATFPEVYQVPM+GG
Sbjct: 1   MKKLFALLALAGVAHITTAAEIVGDAKAGANKVSMCIGCHGIPGYKATFPEVYQVPMIGG 60

Query: 59  QSEKYIENALKAYQKGERKHPSMQGIAGSLSDKDIAELAAYYSQQK 104
           QS+KYI  AL AY+KG+R HPSM+GIA SLSD+DIA++AAYYSQQK
Sbjct: 61  QSDKYIAAALHAYKKGDRNHPSMRGIAESLSDQDIADVAAYYSQQK 106


>ref|YP_001099115.1| putative cytochrome c [Herminiimonas arsenicoxydans]
 emb|CAL60988.1| Putative cytochrome c [Herminiimonas arsenicoxydans]
          Length = 123

 Score =  157 bits (397), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/106 (70%), Positives = 87/106 (82%), Gaps = 2/106 (1%)

Query: 1   MKKLFVLLALAGIASAASAVDLAGNTGKV--NVSMCIGCHGIPGYKATFPEVYQVPMLGG 58
           MKKLF LLA AG+A+ A A ++ G+       VSMCIGCH IPGYKATFPEVYQVPM+GG
Sbjct: 18  MKKLFALLAFAGVANIAVAAEVVGDAKAAANKVSMCIGCHAIPGYKATFPEVYQVPMIGG 77

Query: 59  QSEKYIENALKAYQKGERKHPSMQGIAGSLSDKDIAELAAYYSQQK 104
           QSEKYI +AL AY+KGER HPSM GIA S+SD+DIA++AAYYSQQK
Sbjct: 78  QSEKYIISALHAYKKGERNHPSMHGIAASMSDQDIADVAAYYSQQK 123


>emb|CBJ38158.1| cytochrome c, class IC [Ralstonia solanacearum CMR15]
          Length = 115

 Score =  148 bits (374), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 87/105 (82%), Gaps = 2/105 (1%)

Query: 1   MKKLFVLLALAGIASAASAVDLAGNT--GKVNVSMCIGCHGIPGYKATFPEVYQVPMLGG 58
           MKK+  ++AL  + ++ASA D+ GN   G   V+MCIGCH IP Y+A++PEVY+VP LGG
Sbjct: 1   MKKILTMVALGALTASASAADIQGNAQAGAGKVAMCIGCHAIPDYRASYPEVYRVPYLGG 60

Query: 59  QSEKYIENALKAYQKGERKHPSMQGIAGSLSDKDIAELAAYYSQQ 103
           Q+ KYIE+AL AY+KGERKHP+M+GIAGSLSD+DIA+LAAYYSQQ
Sbjct: 61  QNAKYIESALNAYRKGERKHPTMRGIAGSLSDQDIADLAAYYSQQ 105


>ref|YP_295247.1| cytochrome c, class I [Ralstonia eutropha JMP134]
 gb|AAZ60403.1| Cytochrome c, class I [Ralstonia eutropha JMP134]
          Length = 115

 Score =  148 bits (374), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 89/106 (83%), Gaps = 2/106 (1%)

Query: 1   MKKLFVLLALAGIASAASAVDLAGN--TGKVNVSMCIGCHGIPGYKATFPEVYQVPMLGG 58
           MKKL  ++ L   A+AA A ++ GN    K  V+MCIGCHGIPGY+A+FPEVY+VPMLGG
Sbjct: 1   MKKLLTMVVLGAAATAAQAQEVKGNGDAAKDKVAMCIGCHGIPGYRASFPEVYEVPMLGG 60

Query: 59  QSEKYIENALKAYQKGERKHPSMQGIAGSLSDKDIAELAAYYSQQK 104
           QS KYIENALK+YQKG+RKHP+M+GIA SLSD+DIA++AAYYSQQK
Sbjct: 61  QSAKYIENALKSYQKGDRKHPTMRGIAASLSDQDIADVAAYYSQQK 106