BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0015.p         (115 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004753181.1| putative site-specific recombinase [Collimon...   147   6e-34
ref|YP_001352401.1| site-specific recombinase transmembrane prot...   123   7e-27
ref|YP_003775035.1| site-specific recombinase transmembrane prot...   114   5e-24
ref|YP_001099114.1| putative site-specific recombinase; putative...   111   5e-23
ref|YP_583178.1| site-specific recombinase Gcr [Cupriavidus meta...   105   3e-21

>ref|YP_004753181.1| putative site-specific recombinase [Collimonas fungivorans Ter331]
 gb|AEK62358.1| putative site-specific recombinase; putative membrane protein
           [Collimonas fungivorans Ter331]
          Length = 743

 Score =  147 bits (371), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 87/102 (85%)

Query: 1   LRALIGETAMLLRSQAAAIFGNLIAVIPTMLLMTAGFLLASGATLMTPEKARAALHSLSL 60
           LRAL+ E A+LLRSQAAA+FGNL+ V+P MLL++   +LA+ A +MT E+A A+LHSLS+
Sbjct: 458 LRALLSEIALLLRSQAAAVFGNLMGVVPAMLLISGAIMLATDAPMMTAERASASLHSLSV 517

Query: 61  VGPAPLYAALTGILLWLSSLAAGFADNWFALRRLREALAHQR 102
           +GP PL+AA TGILLWLSSL +GFADNWFALRRLREAL HQR
Sbjct: 518 IGPTPLFAAFTGILLWLSSLVSGFADNWFALRRLREALTHQR 559


>ref|YP_001352401.1| site-specific recombinase transmembrane protein [Janthinobacterium
           sp. Marseille]
 gb|ABR89655.1| site-specific recombinase transmembrane protein [Janthinobacterium
           sp. Marseille]
          Length = 712

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 79/102 (77%)

Query: 1   LRALIGETAMLLRSQAAAIFGNLIAVIPTMLLMTAGFLLASGATLMTPEKARAALHSLSL 60
           LR L+ + A LLRSQAAA+FGNL+AV P ++ ++  FL  +G  +M  +KA AA+ SLS 
Sbjct: 445 LRELLAKIAALLRSQAAAVFGNLLAVAPVIVALSFAFLFITGKPVMNADKAHAAIASLSF 504

Query: 61  VGPAPLYAALTGILLWLSSLAAGFADNWFALRRLREALAHQR 102
           VG  PL+AA TGILLWL+SL +GFADNWFALRRL+E++AH R
Sbjct: 505 VGVTPLFAAFTGILLWLASLISGFADNWFALRRLKESIAHHR 546


>ref|YP_003775035.1| site-specific recombinase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63127.1| site-specific recombinase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 738

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 80/119 (67%), Gaps = 6/119 (5%)

Query: 1   LRALIGETAMLLRSQAAAIFGNLIAVIPTMLLMTAGFLLASGATLMTPEKARAALHSLSL 60
           +R LI E+  LLRSQ+A IFGNL+AV+P    + A    A     M+ E AR ++ SLSL
Sbjct: 449 MRDLIAESGRLLRSQSAGIFGNLLAVVPVTAALCALGWFALDRRPMSLEAARQSVASLSL 508

Query: 61  VGPAPLYAALTGILLWLSSLAAGFADNWFALRRLREALAHQRP------DLXWASCSAW 113
           VGP PLYAALTG+LLWL+SL AGFADNWFALRR+RE +++ R        L    C+AW
Sbjct: 509 VGPTPLYAALTGVLLWLASLVAGFADNWFALRRVREVVSNHRRLVHGLGALRAQRCAAW 567


>ref|YP_001099114.1| putative site-specific recombinase; putative membrane protein
           [Herminiimonas arsenicoxydans]
 emb|CAL60987.1| putative Site-specific recombinase Gcr [Herminiimonas
           arsenicoxydans]
          Length = 715

 Score =  111 bits (277), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 77/102 (75%)

Query: 1   LRALIGETAMLLRSQAAAIFGNLIAVIPTMLLMTAGFLLASGATLMTPEKARAALHSLSL 60
           LR L+   A LLRSQAAA+FGNL+AV P ++ ++   +L     LM+ +KA + + SLSL
Sbjct: 445 LRELLARIAALLRSQAAAVFGNLLAVAPVVVALSLAVVLMFDKPLMSADKAHSTIASLSL 504

Query: 61  VGPAPLYAALTGILLWLSSLAAGFADNWFALRRLREALAHQR 102
           VG  PLYAA TG+LLWL+SL AGFADNWFALRR++E++AH R
Sbjct: 505 VGVTPLYAAFTGLLLWLASLMAGFADNWFALRRVKESIAHHR 546


>ref|YP_583178.1| site-specific recombinase Gcr [Cupriavidus metallidurans CH34]
 gb|ABF07909.1| site-specific recombinase Gcr [Cupriavidus metallidurans CH34]
          Length = 703

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 68/99 (68%)

Query: 4   LIGETAMLLRSQAAAIFGNLIAVIPTMLLMTAGFLLASGATLMTPEKARAALHSLSLVGP 63
            + +T  ++RS AAAIFGNL  V P  L +  G   A GA L+TP KA A + S S++GP
Sbjct: 454 FVDDTIAMIRSNAAAIFGNLSVVFPVALAIEWGVGKAFGAHLLTPAKAIATIESFSILGP 513

Query: 64  APLYAALTGILLWLSSLAAGFADNWFALRRLREALAHQR 102
            PLYA  TG+LLWLSSL AG+ADNWFAL R+ + +A+ R
Sbjct: 514 TPLYAIFTGVLLWLSSLIAGWADNWFALHRVHDVMAYNR 552