BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0011.p (389 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753183.1| hypothetical protein CFU_2533 [Collimonas fu... 692 0.0 ref|YP_003775031.1| hypothetical protein Hsero_1610 [Herbaspiril... 673 0.0 ref|YP_001352399.1| hypothetical protein mma_0709 [Janthinobacte... 624 e-177 ref|NP_519117.1| hypothetical protein RSc0996 [Ralstonia solanac... 618 e-175 ref|YP_003753035.1| hypothetical protein RPSI07_2398 [Ralstonia ... 618 e-175 >ref|YP_004753183.1| hypothetical protein CFU_2533 [Collimonas fungivorans Ter331] gb|AEK62360.1| hypothetical protein CFU_2533 [Collimonas fungivorans Ter331] Length = 389 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/389 (82%), Positives = 360/389 (92%) Query: 1 MLIDFFFTLKDARIPVSIKEFLVLLEAMQKNVISPDIDDFYYLSRITLVKDEANYDKFDK 60 MLIDFFFTLKDA+IPVSIKEFL+LLEA+Q+ VISP +D+FYYL+R TLVKDEA++DKFD+ Sbjct: 1 MLIDFFFTLKDAKIPVSIKEFLLLLEALQRKVISPTLDNFYYLARTTLVKDEAHFDKFDQ 60 Query: 61 AFGSYFKGIETIFEKNPEIPLDWLMKRMQRELTPEQKAALEKFGYDKLMDRLKELLKEQH 120 AFG YFKGI+T+FEKN EIPL+WL++RM+REL+PEQ+A LEKFGYDKLM+RL+ELL+EQ Sbjct: 61 AFGRYFKGIQTVFEKNAEIPLEWLIQRMKRELSPEQQAQLEKFGYDKLMERLQELLEEQK 120 Query: 121 ERHEGGNKWIGTGGSSPFGNSGYNPEGIRIGGESKNRSAVKVWDERTYKDYDSERELGTR 180 ERHEGGNKWIGTGG+SPFG+ G NPEGIRIGG NR+AVKVWD R Y+DYD ERELGTR Sbjct: 121 ERHEGGNKWIGTGGTSPFGHGGSNPEGIRIGGSGGNRTAVKVWDARAYRDYDDERELGTR 180 Query: 181 NIKVALRRLRKFARDGAEEELALDDTIRATANNAGYLDIKMQPERRNNIKVMMLFDVGGS 240 NIKVALRRLRKFAR+G EELALDDTIRATANNAGYLDIKM+PER+NNIKV+ML DVGG+ Sbjct: 181 NIKVALRRLRKFAREGIAEELALDDTIRATANNAGYLDIKMRPERKNNIKVLMLLDVGGT 240 Query: 241 MDDHIARTEELFSAAKTEFKNMEFFYFHNCVYDYVWKNNRRRHAERFPTWDLLHKYSPDT 300 MDDHIARTEELFSAAKTEFKNMEFFYFHNCVYDY+WKNN+RRHAERFPTWD+L KY+PDT Sbjct: 241 MDDHIARTEELFSAAKTEFKNMEFFYFHNCVYDYLWKNNQRRHAERFPTWDILRKYTPDT 300 Query: 301 KLIFVGDATMSPYEIVQPGGSVEYNNPEAGAVWLQRFTSTFANFAWLNPEPEGLWQYRQS 360 KLIFVGDATMSPYEI+QPGGSVEYNN EAGA WLQRFT F F WLNPEPEGLWQYRQS Sbjct: 301 KLIFVGDATMSPYEILQPGGSVEYNNEEAGAEWLQRFTKAFPKFVWLNPEPEGLWQYRQS 360 Query: 361 ISIIQQLMSQRMFPLTIDGLERAMRLLSK 389 + +I+QLMS RMFP+T+DGLER MRLLSK Sbjct: 361 VEVIRQLMSNRMFPVTMDGLERGMRLLSK 389 >ref|YP_003775031.1| hypothetical protein Hsero_1610 [Herbaspirillum seropedicae SmR1] gb|ADJ63123.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 389 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/389 (83%), Positives = 365/389 (93%) Query: 1 MLIDFFFTLKDARIPVSIKEFLVLLEAMQKNVISPDIDDFYYLSRITLVKDEANYDKFDK 60 MLIDFF+T+K A +PVSIKEFL LLEAM K VISP +D+FY+LSR+TLVKDEA++DKFD+ Sbjct: 1 MLIDFFYTVKQAGVPVSIKEFLTLLEAMDKQVISPSLDEFYFLSRLTLVKDEAHFDKFDR 60 Query: 61 AFGSYFKGIETIFEKNPEIPLDWLMKRMQRELTPEQKAALEKFGYDKLMDRLKELLKEQH 120 AFG+YFKGIETIFEK PEIPL+WL+K++QR+LTPEQKAA+EKFGYDKLMDRLK+LL+EQ Sbjct: 61 AFGAYFKGIETIFEKRPEIPLEWLVKQLQRDLTPEQKAAIEKFGYDKLMDRLKQLLEEQK 120 Query: 121 ERHEGGNKWIGTGGSSPFGNSGYNPEGIRIGGESKNRSAVKVWDERTYKDYDSERELGTR 180 ERHEGG+KWIGTGG SPFG+ GYNPEGIRIGG+ RSAVKVW+ER Y+DYD ERELGTR Sbjct: 121 ERHEGGSKWIGTGGVSPFGHGGYNPEGIRIGGKGGQRSAVKVWEERQYQDYDGERELGTR 180 Query: 181 NIKVALRRLRKFARDGAEEELALDDTIRATANNAGYLDIKMQPERRNNIKVMMLFDVGGS 240 NIKVALRRLR+FAR+G +EELALDDTIRATA+NAGYLDI+MQPER+N IKV+MLFDVGGS Sbjct: 181 NIKVALRRLRRFAREGLDEELALDDTIRATASNAGYLDIRMQPERKNKIKVLMLFDVGGS 240 Query: 241 MDDHIARTEELFSAAKTEFKNMEFFYFHNCVYDYVWKNNRRRHAERFPTWDLLHKYSPDT 300 MDDHIARTEELFSAA+TEFKNMEFFYFHNCVYDY+WKNNRRRHAERFPTWD+L KY+PDT Sbjct: 241 MDDHIARTEELFSAARTEFKNMEFFYFHNCVYDYLWKNNRRRHAERFPTWDVLRKYTPDT 300 Query: 301 KLIFVGDATMSPYEIVQPGGSVEYNNPEAGAVWLQRFTSTFANFAWLNPEPEGLWQYRQS 360 KLIFVGDATMSPYEIVQPGG+VEYNN EAGA WLQRFTSTF +F WLNPEPEGLWQYRQS Sbjct: 301 KLIFVGDATMSPYEIVQPGGAVEYNNAEAGAEWLQRFTSTFPHFVWLNPEPEGLWQYRQS 360 Query: 361 ISIIQQLMSQRMFPLTIDGLERAMRLLSK 389 I++I+QLM+ RMFPLT+DGLE AMRLLSK Sbjct: 361 IALIRQLMNDRMFPLTMDGLEGAMRLLSK 389 >ref|YP_001352399.1| hypothetical protein mma_0709 [Janthinobacterium sp. Marseille] gb|ABR89754.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 382 Score = 624 bits (1610), Expect = e-177, Method: Compositional matrix adjust. Identities = 284/381 (74%), Positives = 341/381 (89%) Query: 9 LKDARIPVSIKEFLVLLEAMQKNVISPDIDDFYYLSRITLVKDEANYDKFDKAFGSYFKG 68 LKDA+IPVSIKEFLVLLEA++K VIS DDFYYL+R+TLVKDEAN+DKFD+AF YFKG Sbjct: 2 LKDAKIPVSIKEFLVLLEALEKEVISLSFDDFYYLARLTLVKDEANFDKFDRAFSLYFKG 61 Query: 69 IETIFEKNPEIPLDWLMKRMQRELTPEQKAALEKFGYDKLMDRLKELLKEQHERHEGGNK 128 I T FE+N IPLDWL+K R+L+PE++A L+K+GYDKL +RL++LLKEQ ERHEGG+K Sbjct: 62 ISTAFEENANIPLDWLLKNAARKLSPEEQALLQKYGYDKLAERLQQLLKEQKERHEGGSK 121 Query: 129 WIGTGGSSPFGNSGYNPEGIRIGGESKNRSAVKVWDERTYKDYDSERELGTRNIKVALRR 188 WIGTGG+SPFGNSG NPEGIRIGGES+NR+AVKVW++RTY+DYD++RE+GTRN+KVALRR Sbjct: 122 WIGTGGTSPFGNSGTNPEGIRIGGESRNRTAVKVWEQRTYRDYDADREIGTRNVKVALRR 181 Query: 189 LRKFARDGAEEELALDDTIRATANNAGYLDIKMQPERRNNIKVMMLFDVGGSMDDHIART 248 LRKFAR GA +E +LDDT+RATANNAGYLDIKMQPER+NNIKV+ML DVGG+MD+HI RT Sbjct: 182 LRKFARHGAADEFSLDDTVRATANNAGYLDIKMQPERKNNIKVLMLLDVGGTMDEHIQRT 241 Query: 249 EELFSAAKTEFKNMEFFYFHNCVYDYVWKNNRRRHAERFPTWDLLHKYSPDTKLIFVGDA 308 EELFSAAK EFKNMEF+YFHNCVYD +W+NN+R+ ERF TWD+L KY+PDTK+IFVGDA Sbjct: 242 EELFSAAKAEFKNMEFYYFHNCVYDQLWRNNQRKRTERFSTWDVLRKYTPDTKVIFVGDA 301 Query: 309 TMSPYEIVQPGGSVEYNNPEAGAVWLQRFTSTFANFAWLNPEPEGLWQYRQSISIIQQLM 368 TMSPYEI+Q GG+V+Y+N EAGA WLQRFT TF N+ WLNPEPE +W+YRQSI+II++ M Sbjct: 302 TMSPYEILQVGGAVDYHNEEAGAEWLQRFTKTFPNYIWLNPEPEHIWEYRQSIAIIRRQM 361 Query: 369 SQRMFPLTIDGLERAMRLLSK 389 RM+PLT++GLER MR LSK Sbjct: 362 DNRMYPLTLEGLERGMRTLSK 382 >ref|NP_519117.1| hypothetical protein RSc0996 [Ralstonia solanacearum GMI1000] emb|CAD14698.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 391 Score = 618 bits (1594), Expect = e-175, Method: Compositional matrix adjust. Identities = 287/391 (73%), Positives = 337/391 (86%), Gaps = 2/391 (0%) Query: 1 MLIDFFFTLKDARIPVSIKEFLVLLEAMQKNVISPDIDDFYYLSRITLVKDEANYDKFDK 60 MLIDFFFTL+ AR+PVS+KE+L+LLE +++ VI+P +D FY+L+R TLVKDE +YDKFD+ Sbjct: 1 MLIDFFFTLRHARLPVSVKEYLMLLEGLKRQVIAPSLDQFYFLARTTLVKDEKHYDKFDQ 60 Query: 61 AFGSYFKGIETIFEKNPEIPLDWLMKRMQRELTPEQKAALEKFG-YDKLMDRLKELLKEQ 119 AFG+YFKG+E + EIPLDWL K+++RELTPE+KA +E G DKLM+RL+ELL EQ Sbjct: 61 AFGAYFKGVEDAIDWRAEIPLDWLAKQLERELTPEEKAQVEAMGGIDKLMERLRELLSEQ 120 Query: 120 HERHEGGNKWIGTGGSSPFGNSGYNPEGIRIGGESK-NRSAVKVWDERTYKDYDSERELG 178 HERHEGG+KWIGTGG+SPFG+ GYNPEG+RIGG SK NR+AVKVW+ R Y+DYD ELG Sbjct: 121 HERHEGGSKWIGTGGTSPFGHGGYNPEGVRIGGPSKGNRTAVKVWEARAYRDYDDTVELG 180 Query: 179 TRNIKVALRRLRKFARDGAEEELALDDTIRATANNAGYLDIKMQPERRNNIKVMMLFDVG 238 TRNIKVALRRLRKFARDGA+ EL LDDTI ATA NAG LDIKM+PER NN+KV+ML DVG Sbjct: 181 TRNIKVALRRLRKFARDGADVELDLDDTIHATAANAGLLDIKMRPERHNNVKVLMLMDVG 240 Query: 239 GSMDDHIARTEELFSAAKTEFKNMEFFYFHNCVYDYVWKNNRRRHAERFPTWDLLHKYSP 298 GSMDDHI R EELFSAAK EFK++E++YFHNCVY+++WKNNRRRHAERF TWD++ KY P Sbjct: 241 GSMDDHIKRVEELFSAAKAEFKHLEYYYFHNCVYEWLWKNNRRRHAERFSTWDVIRKYPP 300 Query: 299 DTKLIFVGDATMSPYEIVQPGGSVEYNNPEAGAVWLQRFTSTFANFAWLNPEPEGLWQYR 358 D KLIFVGDATMSPYEI+Q GGSVEYNNPEAGAVWLQR F FAWLNPEPEGLWQYR Sbjct: 301 DYKLIFVGDATMSPYEILQAGGSVEYNNPEAGAVWLQRLIEQFPRFAWLNPEPEGLWQYR 360 Query: 359 QSISIIQQLMSQRMFPLTIDGLERAMRLLSK 389 QS+S+I Q+M RM+P+TI GLE AMRLLSK Sbjct: 361 QSVSVINQIMKTRMYPVTIAGLEAAMRLLSK 391 >ref|YP_003753035.1| hypothetical protein RPSI07_2398 [Ralstonia solanacearum PSI07] emb|CBJ51763.1| conserved protein of unknown function [Ralstonia solanacearum PSI07] Length = 391 Score = 618 bits (1593), Expect = e-175, Method: Compositional matrix adjust. Identities = 287/391 (73%), Positives = 338/391 (86%), Gaps = 2/391 (0%) Query: 1 MLIDFFFTLKDARIPVSIKEFLVLLEAMQKNVISPDIDDFYYLSRITLVKDEANYDKFDK 60 MLIDFFFTL+ A++PVS+KE+L LLE +++ VI+P +D FY+L+R TLVKDE +YDKFD+ Sbjct: 1 MLIDFFFTLRHAKLPVSVKEYLTLLEGLKQQVIAPSLDAFYFLARTTLVKDEKHYDKFDQ 60 Query: 61 AFGSYFKGIETIFEKNPEIPLDWLMKRMQRELTPEQKAALEKFG-YDKLMDRLKELLKEQ 119 AFG+YFKG+E + + +IPLDWL K+++RELTPE+KA +E G DKLM+RLKELL EQ Sbjct: 61 AFGAYFKGVEDMIDWRADIPLDWLTKKLERELTPEEKAGIEAMGGLDKLMERLKELLSEQ 120 Query: 120 HERHEGGNKWIGTGGSSPFGNSGYNPEGIRIGGESK-NRSAVKVWDERTYKDYDSERELG 178 HERHEGG+KWIGTGG+SPFG+ GYNPEGIRIGG SK NR+AVKVW+ R Y+DYD ELG Sbjct: 121 HERHEGGSKWIGTGGTSPFGHGGYNPEGIRIGGPSKGNRTAVKVWEARAYRDYDDMVELG 180 Query: 179 TRNIKVALRRLRKFARDGAEEELALDDTIRATANNAGYLDIKMQPERRNNIKVMMLFDVG 238 TRN+KVALRRLRKFARDGA+ EL LDDTI ATA NAG LDIKM+PER NN+KV+ML DVG Sbjct: 181 TRNLKVALRRLRKFARDGADVELDLDDTIHATAANAGLLDIKMRPERHNNVKVLMLMDVG 240 Query: 239 GSMDDHIARTEELFSAAKTEFKNMEFFYFHNCVYDYVWKNNRRRHAERFPTWDLLHKYSP 298 GSMDDHI R E LFSAAKTEFK++E++YFHNCVY+++WKNNRRRHAERF TWD++ KY P Sbjct: 241 GSMDDHIKRVEALFSAAKTEFKHLEYYYFHNCVYEWLWKNNRRRHAERFSTWDVIRKYPP 300 Query: 299 DTKLIFVGDATMSPYEIVQPGGSVEYNNPEAGAVWLQRFTSTFANFAWLNPEPEGLWQYR 358 D KLIFVGDATMSPYEI+Q GGSVEY+NPEAGAVWLQR T F FAWLNPEPEGLWQYR Sbjct: 301 DYKLIFVGDATMSPYEILQAGGSVEYSNPEAGAVWLQRLTEQFPKFAWLNPEPEGLWQYR 360 Query: 359 QSISIIQQLMSQRMFPLTIDGLERAMRLLSK 389 QSIS+I Q+M RM+P+TI GLE AMRLLSK Sbjct: 361 QSISVISQIMKTRMYPVTIAGLEAAMRLLSK 391