BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0007.p         (141 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775028.1| transcription regulator protein [Herbaspiril...   211   3e-53
ref|YP_004753611.1| MerR transcriptional regulator [Collimonas f...   207   4e-52
ref|YP_001020836.1| MerR family transcriptional regulator [Methy...   183   8e-45
ref|ZP_01916293.1| putative transcriptional regulator, MerR fami...   182   1e-44
ref|ZP_08404054.1| MerR family transcriptional regulator [Rubriv...   179   1e-43

>ref|YP_003775028.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63120.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score =  211 bits (538), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 112/127 (88%)

Query: 7   MNIGEAAQASGVSAKMIRHYEDIGLVPKVARTDAGYRIYGERDVHLLRFIRQGRVLGFSM 66
           MNIGEAA ASGVSAKMIRHYE+ GL+P+ +RTDAGYR+YG+RDVHLLRFIRQ R LGFSM
Sbjct: 1   MNIGEAASASGVSAKMIRHYEETGLIPRASRTDAGYRVYGQRDVHLLRFIRQARQLGFSM 60

Query: 67  KQIGDLMGLWLDQSRPSRKVKQLANDHIAELDIKIRELQAMKSTLQRLAHDCHGDSRPDC 126
            Q+ DL+GLWLDQSRPSRKVKQLA  HIAEL+ +I ELQ MK+TL++L   CHGD+RPDC
Sbjct: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIAELEQRISELQGMKATLEQLVQGCHGDNRPDC 120

Query: 127 PILDALG 133
           PIL+ALG
Sbjct: 121 PILEALG 127


>ref|YP_004753611.1| MerR transcriptional regulator [Collimonas fungivorans Ter331]
 gb|AEK62788.1| MerR transcriptional regulator [Collimonas fungivorans Ter331]
          Length = 133

 Score =  207 bits (527), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 96/129 (74%), Positives = 111/129 (86%)

Query: 5   TSMNIGEAAQASGVSAKMIRHYEDIGLVPKVARTDAGYRIYGERDVHLLRFIRQGRVLGF 64
            +MNIG+AA ASGVSAKMIRHYE+ GL+PK +R+D GYR Y ERD+HLLRFIRQGR+LGF
Sbjct: 3   NAMNIGDAALASGVSAKMIRHYEETGLIPKASRSDGGYRTYAERDIHLLRFIRQGRLLGF 62

Query: 65  SMKQIGDLMGLWLDQSRPSRKVKQLANDHIAELDIKIRELQAMKSTLQRLAHDCHGDSRP 124
           SMKQI +L+GLWLDQSRPS KVKQLA  HI ELD KI+ELQAMK+TL++LA  CHGD RP
Sbjct: 63  SMKQIAELIGLWLDQSRPSSKVKQLALSHITELDDKIKELQAMKATLEQLACHCHGDDRP 122

Query: 125 DCPILDALG 133
           DCPIL+ L 
Sbjct: 123 DCPILEGLA 131


>ref|YP_001020836.1| MerR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gb|ABM94601.1| transcriptional regulator, MerR family [Methylibium petroleiphilum
           PM1]
          Length = 159

 Score =  183 bits (464), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 84/128 (65%), Positives = 104/128 (81%)

Query: 6   SMNIGEAAQASGVSAKMIRHYEDIGLVPKVARTDAGYRIYGERDVHLLRFIRQGRVLGFS 65
           SMNIGEA++ASGVSAKMIRHYE +GL P+ ARTD+GYR Y  ++V  LRF+RQ R LGFS
Sbjct: 2   SMNIGEASKASGVSAKMIRHYESVGLFPEAARTDSGYRQYTAKEVGTLRFVRQSRDLGFS 61

Query: 66  MKQIGDLMGLWLDQSRPSRKVKQLANDHIAELDIKIRELQAMKSTLQRLAHDCHGDSRPD 125
           ++QI DL+GLW D+ RPSR+V+ LA  HI ELD K+ ELQ+MK+TL+ L H CHGD RPD
Sbjct: 62  IEQIRDLLGLWQDRKRPSRQVRALAQAHIEELDEKLNELQSMKATLEHLVHCCHGDDRPD 121

Query: 126 CPILDALG 133
           CPI+D+L 
Sbjct: 122 CPIIDSLA 129


>ref|ZP_01916293.1| putative transcriptional regulator, MerR family protein
           [Limnobacter sp. MED105]
 gb|EDM82469.1| putative transcriptional regulator, MerR family protein
           [Limnobacter sp. MED105]
          Length = 138

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 103/127 (81%)

Query: 8   NIGEAAQASGVSAKMIRHYEDIGLVPKVARTDAGYRIYGERDVHLLRFIRQGRVLGFSMK 67
            IGEAA  SG+SAKMIRHYE +GL+ + ARTDAGYR+Y  RD+H+LRFIR  R LGFS+K
Sbjct: 11  TIGEAAMESGISAKMIRHYEQVGLLKEAARTDAGYRLYNSRDLHVLRFIRHSRDLGFSIK 70

Query: 68  QIGDLMGLWLDQSRPSRKVKQLANDHIAELDIKIRELQAMKSTLQRLAHDCHGDSRPDCP 127
           QI +L+GLW D++RPSR+VK+LA  H++ L+ KIREL AMKS L+RL H C GDSRPDCP
Sbjct: 71  QIEELLGLWQDKTRPSREVKKLAQSHLSALESKIRELNAMKSELERLVHCCKGDSRPDCP 130

Query: 128 ILDALGS 134
           IL+ L +
Sbjct: 131 ILEGLAA 137


>ref|ZP_08404054.1| MerR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gb|EGJ12387.1| MerR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 133

 Score =  179 bits (454), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 102/131 (77%)

Query: 7   MNIGEAAQASGVSAKMIRHYEDIGLVPKVARTDAGYRIYGERDVHLLRFIRQGRVLGFSM 66
           MNIGEAA ASGVSAKMIRHYE IGL+P+  R+ AGYR Y ERDVH LRF+R  R LGF +
Sbjct: 1   MNIGEAAAASGVSAKMIRHYERIGLLPQAQRSAAGYRRYDERDVHTLRFVRHARDLGFPL 60

Query: 67  KQIGDLMGLWLDQSRPSRKVKQLANDHIAELDIKIRELQAMKSTLQRLAHDCHGDSRPDC 126
           ++I DL+GLW D+ RPSR+VK LA +H+A +D K+ ELQA+K+TL+RL   CHGD RPDC
Sbjct: 61  ERIRDLIGLWHDRERPSRQVKALAREHLAAIDAKLAELQAVKATLERLVQCCHGDERPDC 120

Query: 127 PILDALGSGLP 137
           PILD L    P
Sbjct: 121 PILDRLAGERP 131