BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0005.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001189707.1| hypothetical protein Pmen_4228 [Pseudomonas ...    98   5e-19
ref|YP_002799451.1| hypothetical protein Avin_22850 [Azotobacter...    96   2e-18
ref|YP_004382343.1| hypothetical protein MDS_4560 [Pseudomonas m...    95   4e-18
ref|YP_003964686.1| hypothetical protein EIO_2292 [Ketogulonicig...    94   5e-18
ref|YP_004793823.1| hypothetical protein BurJV3_3280 [Burkholder...    94   6e-18

>ref|YP_001189707.1| hypothetical protein Pmen_4228 [Pseudomonas mendocina ymp]
 gb|ABP86975.1| conserved hypothetical protein 156 [Pseudomonas mendocina ymp]
          Length = 115

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 74/123 (60%), Gaps = 12/123 (9%)

Query: 3   KSSACALALSARLTVAAVAAVAAIAAIPAFAQYTGPSHKPAIQTVASAAKSADDTHVVLV 62
           K +A AL +   L+ AA A             YTGP   P + TVA+A ++ADDTHVVL 
Sbjct: 2   KRTAFALMVLPLLSTAAFAT-----------GYTGPGATPQVTTVAAALEAADDTHVVLE 50

Query: 63  GFIIAKLRDEHYTFQDNSGKIEIEIDDKHFPSTPVSETTQVRIHGKVDKHLGKDATIDVK 122
           G I+ +L+DE Y F+D +G I++EIDD+ +P   VSE  +VR+ G+VDK       IDV 
Sbjct: 51  GQIVKRLQDELYEFKDGTGTIQVEIDDEDWPGQSVSENAKVRLTGEVDKDFNS-REIDVD 109

Query: 123 KVE 125
           +VE
Sbjct: 110 RVE 112


>ref|YP_002799451.1| hypothetical protein Avin_22850 [Azotobacter vinelandii DJ]
 gb|ACO78476.1| Conserved hypothetical protein 156 [Azotobacter vinelandii DJ]
          Length = 114

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 74/108 (68%), Gaps = 4/108 (3%)

Query: 20  VAAVAAIAAIPAFA-QYTGPSHKPAIQTVASAAKSADDTHVVLVGFIIAKLRDEHYTFQD 78
           +  + ++ A  +FA  YTGP  + AI TV++A ++AD+T V L G I+ +L+ EHY FQD
Sbjct: 6   ILLITSLIATGSFAAGYTGPGAQGAISTVSAAREAADETPVTLEGRIVRQLKHEHYEFQD 65

Query: 79  NSGKIEIEIDDKHFPSTPVSETTQVRIHGKVDKHL-GKDATIDVKKVE 125
            +G IE+EIDD+ +P+T + E  QVR+ G+VDK L G+  TIDV  +E
Sbjct: 66  RTGSIEVEIDDEDWPTTAIDEKRQVRLQGEVDKELFGR--TIDVDFIE 111


>ref|YP_004382343.1| hypothetical protein MDS_4560 [Pseudomonas mendocina NK-01]
 gb|AEB60591.1| hypothetical protein MDS_4560 [Pseudomonas mendocina NK-01]
          Length = 115

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 74/123 (60%), Gaps = 12/123 (9%)

Query: 3   KSSACALALSARLTVAAVAAVAAIAAIPAFAQYTGPSHKPAIQTVASAAKSADDTHVVLV 62
           K +A AL +   L+ AA A             YTGP   P + TV++A ++ADD HVVL 
Sbjct: 2   KRTALALMVLPLLSTAAFAT-----------GYTGPGATPQVTTVSAALEAADDNHVVLE 50

Query: 63  GFIIAKLRDEHYTFQDNSGKIEIEIDDKHFPSTPVSETTQVRIHGKVDKHLGKDATIDVK 122
           G I+ +L+DE Y F+D +G I++EIDD+ +P+  VSE  +VR+ G+VDK       IDV 
Sbjct: 51  GQIVKRLQDELYEFKDATGTIQVEIDDEDWPAQKVSENAKVRLTGEVDKDFNS-REIDVD 109

Query: 123 KVE 125
           +VE
Sbjct: 110 RVE 112


>ref|YP_003964686.1| hypothetical protein EIO_2292 [Ketogulonicigenium vulgare Y25]
 gb|ADO43386.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25]
 gb|AEM41671.1| putative exported protein [Ketogulonigenium vulgarum WSH-001]
          Length = 122

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 8/107 (7%)

Query: 26  IAAIPAFAQYTGPSHKPA-------IQTVAS-AAKSADDTHVVLVGFIIAKLRDEHYTFQ 77
           + A PA AQY GP+  P        + TVA   A   DD +V L GF+I ++  E Y F+
Sbjct: 12  LCAAPAVAQYVGPAGAPEGVSPGYPLTTVAEIKADPRDDANVTLEGFLIRQIDRETYVFR 71

Query: 78  DNSGKIEIEIDDKHFPSTPVSETTQVRIHGKVDKHLGKDATIDVKKV 124
           D++G+IE+EID+  FP  PVSETT+VRI G+VD H  +D  ID  +V
Sbjct: 72  DDTGEIEVEIDEDDFPRQPVSETTRVRIEGEVDTHRLRDTDIDADRV 118


>ref|YP_004793823.1| hypothetical protein BurJV3_3280 [Burkholderia sp. JV3]
 gb|AEM52597.1| protein of unknown function DUF388, OB-fold [Burkholderia sp. JV3]
          Length = 120

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 66/114 (57%)

Query: 11  LSARLTVAAVAAVAAIAAIPAFAQYTGPSHKPAIQTVASAAKSADDTHVVLVGFIIAKLR 70
           ++  L +A +A   A+ + PAFAQYTGP    A  TVA A    DD  VVL G ++AKL 
Sbjct: 1   MNRLLAIALIATPLALLSPPAFAQYTGPGAGTASSTVADARAQRDDQPVVLRGNLVAKLG 60

Query: 71  DEHYTFQDNSGKIEIEIDDKHFPSTPVSETTQVRIHGKVDKHLGKDATIDVKKV 124
            E Y F+D SG+IE+EIDD+  P   V   T V + GKVD H  K   IDV  V
Sbjct: 61  HERYQFRDASGQIEVEIDDEDMPPQAVGADTVVELRGKVDTHRFKPTDIDVDHV 114