BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0004.p         (150 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775026.1| Pb-specific transcription regulator protein ...   232   2e-59
ref|YP_004751782.1| transcriptional regulator [Collimonas fungiv...   227   6e-58
ref|YP_001099902.1| transcriptional regulator CadR [Herminiimona...   220   5e-56
ref|YP_001353487.1| MerR family transcriptional regulator [Janth...   214   3e-54
ref|YP_002945446.1| MerR family transcriptional regulator [Vario...   187   5e-46

>ref|YP_003775026.1| Pb-specific transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63118.1| Pb-specific transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 150

 Score =  232 bits (591), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/150 (80%), Positives = 134/150 (89%)

Query: 1   MDALKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLD 60
           MD LKIGELAA+ DCPVET+RYYE+EALLP PTRSQ NYRLYG+RHVERLQFIRHCRSLD
Sbjct: 1   MDTLKIGELAAKADCPVETVRYYEKEALLPEPTRSQANYRLYGERHVERLQFIRHCRSLD 60

Query: 61  MTLDEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQA 120
           MTLDEVR LL+ RDAPE++CG VNALLDKHIGHVA+RIA+L+ LQAQL+ LRAQC+ AQ 
Sbjct: 61  MTLDEVRELLRLRDAPEQDCGGVNALLDKHIGHVAERIAQLQALQAQLRQLRAQCEVAQP 120

Query: 121 TRDCGILQGLANMSDDSKPVNLGSHGSGCH 150
            RDCGILQGLA++ DD KP NLGSHG GCH
Sbjct: 121 ARDCGILQGLASLPDDLKPANLGSHGGGCH 150


>ref|YP_004751782.1| transcriptional regulator [Collimonas fungivorans Ter331]
 gb|AEK60959.1| transcriptional regulator [Collimonas fungivorans Ter331]
          Length = 151

 Score =  227 bits (578), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 109/148 (73%), Positives = 119/148 (80%), Gaps = 1/148 (0%)

Query: 3   ALKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLDMT 62
           +LKIGELA+   CPVETIRYYERE LLP   RSQ NYRLYG  H+ERLQFIRHCRSLDMT
Sbjct: 5   SLKIGELASHAGCPVETIRYYEREGLLPLAARSQNNYRLYGQAHIERLQFIRHCRSLDMT 64

Query: 63  LDEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQATR 122
           LDEVR LLQFRD PE+NC EVN+LLD HI HVA RI+ELK LQ QLK LR QC   QA +
Sbjct: 65  LDEVRRLLQFRDLPEDNCAEVNSLLDHHIEHVADRISELKALQTQLKQLRKQCQKTQAAK 124

Query: 123 DCGILQGLANMSDDSKPVNLGSHGSGCH 150
           DCGILQGLA+M D++ P NLGSHG G H
Sbjct: 125 DCGILQGLADMEDEA-PANLGSHGGGVH 151


>ref|YP_001099902.1| transcriptional regulator CadR [Herminiimonas arsenicoxydans]
 emb|CAL61777.1| transcriptional regulator (CadR) [Herminiimonas arsenicoxydans]
          Length = 151

 Score =  220 bits (561), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/150 (70%), Positives = 121/150 (80%), Gaps = 1/150 (0%)

Query: 1   MDALKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLD 60
           +  LKIGELAA+T   VETIRYYE++ LLP P RS GNYR+YG+ HV+RLQFIRHCRSLD
Sbjct: 3   LQILKIGELAAQTGSSVETIRYYEQQNLLPQPARSAGNYRIYGEAHVKRLQFIRHCRSLD 62

Query: 61  MTLDEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQA 120
           MTLDE+R+LL FRD PEENC  VN LLDKHIGHVA RI ELK LQ QL+ LR++C T Q+
Sbjct: 63  MTLDEIRTLLNFRDTPEENCAGVNTLLDKHIGHVADRIRELKALQVQLQELRSRCLTVQS 122

Query: 121 TRDCGILQGLANMSDDSKPVNLGSHGSGCH 150
           T+ CGILQGLAN +DD  P NLGSH  GCH
Sbjct: 123 TQACGILQGLAN-ADDIDPRNLGSHSGGCH 151


>ref|YP_001353487.1| MerR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR90387.1| transcriptional regulator, MerR family [Janthinobacterium sp.
           Marseille]
          Length = 151

 Score =  214 bits (545), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 117/150 (78%), Gaps = 1/150 (0%)

Query: 1   MDALKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLD 60
           + ALKIGELA +T   VETIRYYE++ LLP   RS  NYRLYGD HV RLQFIRHCRSLD
Sbjct: 3   LQALKIGELALQTGSSVETIRYYEQQNLLPQAMRSSSNYRLYGDEHVRRLQFIRHCRSLD 62

Query: 61  MTLDEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQA 120
           MTLDE+R+LL FRD PEENC  VN LLDKHI HV+ RI ELK LQ +LK LR++C T Q 
Sbjct: 63  MTLDEIRTLLSFRDTPEENCAGVNTLLDKHIEHVSHRIKELKALQTELKQLRSRCLTTQT 122

Query: 121 TRDCGILQGLANMSDDSKPVNLGSHGSGCH 150
             +CGILQGLAN ++DS+P  LG+HG GCH
Sbjct: 123 VEECGILQGLAN-AEDSEPKKLGTHGGGCH 151


>ref|YP_002945446.1| MerR family transcriptional regulator [Variovorax paradoxus S110]
 gb|ACS20180.1| transcriptional regulator, MerR family [Variovorax paradoxus S110]
          Length = 157

 Score =  187 bits (475), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)

Query: 4   LKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDRHVERLQFIRHCRSLDMTL 63
           +KIG+LA   + PVETIRYYERE LLPAP R++GNYR+Y D H +RL FIR CRSLDMTL
Sbjct: 1   MKIGDLAKAANTPVETIRYYEREQLLPAPARTEGNYRIYDDEHAQRLGFIRRCRSLDMTL 60

Query: 64  DEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELKKLQAQLKSLRAQCDTAQATRD 123
           DE+R+LL+FRDAP E+CGEVN LLD HIGHVA RI ELK L+ QLK+LR QC   ++ R+
Sbjct: 61  DEIRNLLRFRDAPGEDCGEVNQLLDDHIGHVAARIRELKTLEKQLKALRQQCCGPESARN 120

Query: 124 CGILQGLANMSDDSKPVNLGSHGSGCH 150
           CGILQ L   +  ++P   G H    H
Sbjct: 121 CGILQELDTAAPAAEP--FGQHAGHVH 145