BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0001.p         (216 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGP43234.1| CAIB/BAIF family CoA transferase [Achromobacter x...   124   1e-26
ref|YP_004212680.1| L-carnitine dehydratase/bile acid-inducible ...   119   4e-25
ref|YP_371907.1| L-carnitine dehydratase/bile acid-inducible pro...   117   1e-24
ref|ZP_07777218.1| L-carnitine dehydratase/bile acid-inducible p...   116   2e-24
ref|YP_350111.1| L-carnitine dehydratase/bile acid-inducible pro...   115   5e-24

>gb|EGP43234.1| CAIB/BAIF family CoA transferase [Achromobacter xylosoxidans AXX-A]
          Length = 338

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 68/85 (80%)

Query: 12  SGAWKTRRGFDSLVQMSSGIAEAGMRRLGRDKPTPLPVQALDHATGYLMATAAIRGLTQR 71
           SG W+ RRGFDSLVQMS+GIAEAGMR  G D+P PLP QALDHATGYLMA AAIRGLT+R
Sbjct: 191 SGPWQGRRGFDSLVQMSTGIAEAGMRAKGADRPVPLPCQALDHATGYLMAAAAIRGLTER 250

Query: 72  LKTGKGSEVLTSLARMAQLLVTGSG 96
           L TG G+    SLAR AQLLVT  G
Sbjct: 251 LATGAGNTTRASLARSAQLLVTHRG 275


>ref|YP_004212680.1| L-carnitine dehydratase/bile acid-inducible protein F [Rahnella sp.
           Y9602]
 gb|ADW73553.1| L-carnitine dehydratase/bile acid-inducible protein F [Rahnella sp.
           Y9602]
          Length = 460

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 66/81 (81%)

Query: 12  SGAWKTRRGFDSLVQMSSGIAEAGMRRLGRDKPTPLPVQALDHATGYLMATAAIRGLTQR 71
           SG W+ RRGFDSLVQMS GIAE GM+R GR KP PLPVQALDH TGYLMA A ++GLTQR
Sbjct: 316 SGPWRERRGFDSLVQMSCGIAEQGMQRSGRHKPVPLPVQALDHTTGYLMAAAVLQGLTQR 375

Query: 72  LKTGKGSEVLTSLARMAQLLV 92
           ++TG+GSE   SLAR A+ L+
Sbjct: 376 METGQGSECRLSLARTARELM 396


>ref|YP_371907.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia
           sp. 383]
 gb|ABB11263.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia
           sp. 383]
          Length = 477

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 65/77 (84%)

Query: 12  SGAWKTRRGFDSLVQMSSGIAEAGMRRLGRDKPTPLPVQALDHATGYLMATAAIRGLTQR 71
           SG W+ RRGFDSL+Q S+GIAEAGMR +GRD+P  LPVQA+DHATGYLMATAAIRGLT R
Sbjct: 328 SGEWRCRRGFDSLIQTSTGIAEAGMRVMGRDEPVNLPVQAIDHATGYLMATAAIRGLTTR 387

Query: 72  LKTGKGSEVLTSLARMA 88
           +K G G+EV  SLAR A
Sbjct: 388 MKLGVGTEVRASLARTA 404


>ref|ZP_07777218.1| L-carnitine dehydratase/bile acid-inducible protein F [Pseudomonas
           fluorescens WH6]
 gb|EFQ61696.1| L-carnitine dehydratase/bile acid-inducible protein F [Pseudomonas
           fluorescens WH6]
          Length = 449

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 65/81 (80%)

Query: 12  SGAWKTRRGFDSLVQMSSGIAEAGMRRLGRDKPTPLPVQALDHATGYLMATAAIRGLTQR 71
           SG W+ RRGFDSLVQMSSGIA+AGM     DKP PLP+QALDHATGYLMA +AIR L++R
Sbjct: 308 SGPWRNRRGFDSLVQMSSGIADAGMAWKQSDKPVPLPLQALDHATGYLMAASAIRALSER 367

Query: 72  LKTGKGSEVLTSLARMAQLLV 92
           LKTG+G     SLAR A+LLV
Sbjct: 368 LKTGRGGSARLSLARTAKLLV 388


>ref|YP_350111.1| L-carnitine dehydratase/bile acid-inducible protein F [Pseudomonas
           fluorescens Pf0-1]
 gb|ABA76120.1| putative CoA transferase family protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 448

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 68/92 (73%), Gaps = 1/92 (1%)

Query: 12  SGAWKTRRGFDSLVQMSSGIAEAGMRRLGRDKPTPLPVQALDHATGYLMATAAIRGLTQR 71
           SG W+ RRGFDSLVQMSSGIAEAG R    DKPTPLPVQALDHATGYLMA + IR L +R
Sbjct: 308 SGPWQNRRGFDSLVQMSSGIAEAGQRWKQADKPTPLPVQALDHATGYLMAASVIRLLAER 367

Query: 72  LKTGKGSEVLTSLARMAQLLVTGSGKQVDAAL 103
           L++G+G     SLAR A+LL+   G   D AL
Sbjct: 368 LRSGRGGSARLSLARTAKLLIE-HGPGTDQAL 398