BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0030.p         (94 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776997.1| glutamate synthase [Herbaspirillum seropedic...   165   2e-39
ref|YP_004754076.1| ferredoxin-dependent glutamate synthase [Col...   145   2e-33
ref|YP_003905705.1| glutamate synthase (NADPH) [Burkholderia sp....   134   5e-30
ref|YP_004226922.1| glutamate synthase (NADPH) [Burkholderia sp....   132   2e-29
ref|ZP_02882567.1| ferredoxin-dependent glutamate synthase [Burk...   132   2e-29

>ref|YP_003776997.1| glutamate synthase [Herbaspirillum seropedicae SmR1]
 gb|ADJ65089.1| glutamate synthase (NADPH) protein [Herbaspirillum seropedicae
           SmR1]
          Length = 531

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 83/88 (94%)

Query: 1   VPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPFHIVHRINDHEIQLLSEMLKYLEP 60
           VPDKAERV+RFHQSTLHALQELVQAAGLPHTSALRP HIV RINDHEIQL+S +LKYL+P
Sbjct: 443 VPDKAERVFRFHQSTLHALQELVQAAGLPHTSALRPHHIVRRINDHEIQLMSNVLKYLQP 502

Query: 61  GDLITGNYRYQVYEKYWPIARAESFHPE 88
            DL+ GNYRY+VYEK+WPIARAESFHPE
Sbjct: 503 NDLLDGNYRYRVYEKFWPIARAESFHPE 530


>ref|YP_004754076.1| ferredoxin-dependent glutamate synthase [Collimonas fungivorans
           Ter331]
 gb|AEK63253.1| ferredoxin-dependent glutamate synthase [Collimonas fungivorans
           Ter331]
          Length = 538

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 77/87 (88%)

Query: 1   VPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPFHIVHRINDHEIQLLSEMLKYLEP 60
           VPDKAERVYRFH+STLHALQELVQAAGLPH SALR  HIV R +DHE++L+S++L YL+P
Sbjct: 443 VPDKAERVYRFHESTLHALQELVQAAGLPHASALRAHHIVRRTSDHEVKLMSDLLHYLQP 502

Query: 61  GDLITGNYRYQVYEKYWPIARAESFHP 87
           GDL+   YRY V+EKYWPI+RAESFHP
Sbjct: 503 GDLLNQKYRYPVFEKYWPISRAESFHP 529


>ref|YP_003905705.1| glutamate synthase (NADPH) [Burkholderia sp. CCGE1003]
 gb|ADN56414.1| Glutamate synthase (NADPH) [Burkholderia sp. CCGE1003]
          Length = 536

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 76/89 (85%)

Query: 1   VPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPFHIVHRINDHEIQLLSEMLKYLEP 60
           VPDKA+RV+ FH +TLHAL+E+VQAAGL H + LR  HIV R++ HE+QL+SE+LKYLEP
Sbjct: 443 VPDKADRVFNFHHNTLHALKEIVQAAGLKHPAELRAHHIVRRVSSHEVQLMSELLKYLEP 502

Query: 61  GDLITGNYRYQVYEKYWPIARAESFHPEI 89
            DL+ GNYRY +YEK+WP+AR++SF P++
Sbjct: 503 NDLLNGNYRYSLYEKWWPVARSDSFSPKV 531


>ref|YP_004226922.1| glutamate synthase (NADPH) [Burkholderia sp. CCGE1001]
 gb|ADX53862.1| Glutamate synthase (NADPH) [Burkholderia sp. CCGE1001]
          Length = 536

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 76/89 (85%)

Query: 1   VPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPFHIVHRINDHEIQLLSEMLKYLEP 60
           VPDKA+RV+ FH +TLHAL+E+VQAAGL H + LR  HIV R++ HE+QL+SE+LKYLEP
Sbjct: 443 VPDKADRVFNFHHNTLHALKEIVQAAGLKHPAELRAHHIVRRVSSHEVQLMSELLKYLEP 502

Query: 61  GDLITGNYRYQVYEKYWPIARAESFHPEI 89
            DL+ GNYRY +YEK+WP+A+++SF P++
Sbjct: 503 NDLLNGNYRYSLYEKWWPVAQSDSFSPKV 531


>ref|ZP_02882567.1| ferredoxin-dependent glutamate synthase [Burkholderia graminis
           C4D1M]
 gb|EDT11770.1| ferredoxin-dependent glutamate synthase [Burkholderia graminis
           C4D1M]
          Length = 536

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 76/89 (85%)

Query: 1   VPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPFHIVHRINDHEIQLLSEMLKYLEP 60
           VPDKA+RV+ FH +TLHAL+E+VQAAGL H + LR  HIV R++ HE+QL+SE+LKYLEP
Sbjct: 443 VPDKADRVFSFHHNTLHALKEIVQAAGLKHPAELRAHHIVRRVSSHEVQLMSELLKYLEP 502

Query: 61  GDLITGNYRYQVYEKYWPIARAESFHPEI 89
            DL+ GNYRY +YEK+WP+A+++SF P++
Sbjct: 503 NDLLNGNYRYSLYEKWWPVAQSDSFSPKV 531