BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0028.p         (141 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776997.1| glutamate synthase [Herbaspirillum seropedic...    99   3e-19
ref|YP_001894336.1| ferredoxin-dependent glutamate synthase [Bur...    97   1e-18
ref|ZP_02882567.1| ferredoxin-dependent glutamate synthase [Burk...    96   1e-18
ref|YP_557040.1| glutamate synthase (NADPH) [Burkholderia xenovo...    96   1e-18
ref|ZP_06843835.1| Glutamate synthase (NADPH) [Burkholderia sp. ...    96   1e-18

>ref|YP_003776997.1| glutamate synthase [Herbaspirillum seropedicae SmR1]
 gb|ADJ65089.1| glutamate synthase (NADPH) protein [Herbaspirillum seropedicae
          SmR1]
          Length = 531

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 3/73 (4%)

Query: 20 HVVSWWWAAAPLALSMIGVRDIVQRRHAVLRNYPLMGHFRFLFEAIRPEIRQYFFEGENX 79
          H + W W   PLAL+ +G+ D++Q+RHAVLRNYP++GHFRF+FEAIRPE+RQYFFE E  
Sbjct: 26 HQLGWGWGLIPLALTAVGLHDLLQKRHAVLRNYPIIGHFRFMFEAIRPELRQYFFEDE-- 83

Query: 80 ISAPRPTSTAARS 92
              RP S   RS
Sbjct: 84 -MDGRPFSRKKRS 95


>ref|YP_001894336.1| ferredoxin-dependent glutamate synthase [Burkholderia
          phytofirmans PsJN]
 gb|ACD15112.1| ferredoxin-dependent glutamate synthase [Burkholderia
          phytofirmans PsJN]
          Length = 536

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 54/73 (73%), Gaps = 3/73 (4%)

Query: 20 HVVSWWWAAAPLALSMIGVRDIVQRRHAVLRNYPLMGHFRFLFEAIRPEIRQYFFEGENX 79
          H +SW+W   PLAL  +G+ D+ Q+RHA+LRNYPL GHFRFLFE IRPEIRQYF EG+  
Sbjct: 26 HHISWFWIIVPLALVALGLFDLTQQRHAILRNYPLWGHFRFLFEFIRPEIRQYFVEGD-- 83

Query: 80 ISAPRPTSTAARS 92
           +  +P S A RS
Sbjct: 84 -TDEKPFSRAQRS 95


>ref|ZP_02882567.1| ferredoxin-dependent glutamate synthase [Burkholderia graminis
          C4D1M]
 gb|EDT11770.1| ferredoxin-dependent glutamate synthase [Burkholderia graminis
          C4D1M]
          Length = 536

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 63/93 (67%), Gaps = 5/93 (5%)

Query: 1  MILWFMI-FLTLALAILASGHVVSWWWAAAPLALSMIGVRDIVQRRHAVLRNYPLMGHFR 59
          + +W  I  L L+ A+ A+ HV SW W   PLAL  +G+ D+ Q+RHA+LRNYPL GHFR
Sbjct: 7  LAMWSAIALLGLSTALAATQHV-SWLWIVVPLALVALGIFDLTQQRHAILRNYPLWGHFR 65

Query: 60 FLFEAIRPEIRQYFFEGENXISAPRPTSTAARS 92
          FLFE IRPEIRQYF E +   +  +P S A RS
Sbjct: 66 FLFEFIRPEIRQYFVEND---TDEKPFSRAQRS 95


>ref|YP_557040.1| glutamate synthase (NADPH) [Burkholderia xenovorans LB400]
 gb|ABE28988.1| Glutamate synthase (NADPH) [Burkholderia xenovorans LB400]
          Length = 536

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 54/73 (73%), Gaps = 3/73 (4%)

Query: 20 HVVSWWWAAAPLALSMIGVRDIVQRRHAVLRNYPLMGHFRFLFEAIRPEIRQYFFEGENX 79
          H +SW+W   PLAL  +G+ D+ Q+RHA+LRNYPL GHFRFLFE IRPEIRQYF EG+  
Sbjct: 26 HHISWFWIIVPLALVALGLFDLTQQRHAILRNYPLWGHFRFLFEFIRPEIRQYFVEGD-- 83

Query: 80 ISAPRPTSTAARS 92
           +  +P S A RS
Sbjct: 84 -TDEKPFSRAQRS 95


>ref|ZP_06843835.1| Glutamate synthase (NADPH) [Burkholderia sp. Ch1-1]
 gb|EFG68530.1| Glutamate synthase (NADPH) [Burkholderia sp. Ch1-1]
          Length = 536

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 54/73 (73%), Gaps = 3/73 (4%)

Query: 20 HVVSWWWAAAPLALSMIGVRDIVQRRHAVLRNYPLMGHFRFLFEAIRPEIRQYFFEGENX 79
          H +SW+W   PLAL  +G+ D+ Q+RHA+LRNYPL GHFRFLFE IRPEIRQYF EG+  
Sbjct: 26 HHISWFWIIVPLALVALGLFDLTQQRHAILRNYPLWGHFRFLFEFIRPEIRQYFVEGD-- 83

Query: 80 ISAPRPTSTAARS 92
           +  +P S A RS
Sbjct: 84 -TDEKPFSRAQRS 95