BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0024.p (668 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776993.1| 16S rRNA uridine-516 pseudouridylate synthas... 647 0.0 ref|YP_001354188.1| ribosomal large subunit pseudouridine syntha... 552 e-155 ref|YP_001100689.1| putative pseudouridine synthase (Uracil hydr... 551 e-154 ref|ZP_08276235.1| Ribosomal large subunit pseudouridine synthas... 540 e-151 ref|YP_004754093.1| ribosomal large subunit pseudouridine syntha... 534 e-149 >ref|YP_003776993.1| 16S rRNA uridine-516 pseudouridylate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ65085.1| 16S rRNA uridine-516 pseudouridylate synthase protein [Herbaspirillum seropedicae SmR1] Length = 560 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/581 (66%), Positives = 433/581 (74%), Gaps = 49/581 (8%) Query: 93 RAKKVVADADTAPAPAPVAESASPAAEAPKVIVTIGEEITAAPVLLDAPTDSARTKPARR 152 +AK V A+ APAPA E PKVIVT+G+E+ A PVLLDAP D R KPARR Sbjct: 18 KAKPVEAEQIAAPAPA----------ELPKVIVTVGDEVVAPPVLLDAPADPNRNKPARR 67 Query: 153 GVRGPRALRNNRAAQRAAEAGEG----EPHHAVAGDEQPLSVDANAPVPVADQAMAESRR 208 GVRGPRALRNNRAAQRAA + EG + + A ++QP Q + Sbjct: 68 GVRGPRALRNNRAAQRAAASAEGGVPGKADNGAAPEQQPRG-----------QFGKGHGQ 116 Query: 209 DGQGQDRNRQQKGKKPFVKGGK-PKAPQLGLRSHDAGDDVFSFVTSDAYDKEDGARSGAR 267 GQ + Q+GKK F K GK PKAPQLGLR+ + DD+FS+VTS+AYD+++ + GAR Sbjct: 117 GGQNAQNGQGQQGKKNFDKNGKKPKAPQLGLRAAEPVDDIFSYVTSEAYDRDENPKGGAR 176 Query: 268 GTHQLRGKNGRRDLTSEDDAPKLHKVLADSGLGSRRDMEELIVAGRVSVNGEPAHIGQRI 327 HQ+RGKNGRRDLT+EDDAPKLHKVLAD+GLGSRRDMEELIVAGRVSVNGEPAHIGQRI Sbjct: 177 QPHQMRGKNGRRDLTAEDDAPKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRI 236 Query: 328 LPTDQVRINGKLLQRKVSKKPPRVLVYHKPAGEIVSHNDPEGRPSVFDRLPNMKAAKWLA 387 LPTD VRINGKL+QRKVSK+PPRVLVYHKPAGEIVSH DPEGR SVFDRLP MKA KWLA Sbjct: 237 LPTDAVRINGKLIQRKVSKRPPRVLVYHKPAGEIVSHADPEGRNSVFDRLPTMKAGKWLA 296 Query: 388 VGRLDFNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELEQGMRQKLLHGVELDDG 447 VGRLD+NTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELE+GMRQKLL GVELDDG Sbjct: 297 VGRLDYNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLSGVELDDG 356 Query: 448 VAQFSKIADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSRLIRTRYGVMTLPQGLK 507 AQFS+IADGGGEGVNKWYRVTIGEGRNREVRRMFEA+GLTVSRLIRTRYG MTLPQ L+ Sbjct: 357 PAQFSRIADGGGEGVNKWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAMTLPQTLR 416 Query: 508 RGRWEELEENAVRTLLTVCGLEKPGGAEAPSGKSKGGNSGNRNGNGDNRNGNVNGDSQPR 567 RGRWEELEENAVR L+ CGLEK G E SG GG++G GNG+ PR Sbjct: 417 RGRWEELEENAVRNLMAACGLEKQAG-EGKSG--NGGHAGKGQGNGNG----------PR 463 Query: 568 SNANANPMQPRGPRRDQQPSWQGQGQGPRQGQGSRQGQGQGQGQGGRPQGNKPRQPDPLQ 627 NA MQ +GP++ + ++ QG G+ QG G G G + K RQPDPLQ Sbjct: 464 GNA----MQNKGPQKGRGGNYGNQGGNYGNQGGNYGNQGGGYGGGNKGGQPKSRQPDPLQ 519 Query: 628 TALGFPDAGQRRHNRPQRNGGS------GGMPGQGMGAGGQ 662 TALGFPDAGQRR+NRPQR G S GG+PG GG+ Sbjct: 520 TALGFPDAGQRRNNRPQRGGNSAPNFMLGGLPGMNRRRGGR 560 >ref|YP_001354188.1| ribosomal large subunit pseudouridine synthase B [Janthinobacterium sp. Marseille] gb|ABR89575.1| ribosomal large subunit pseudouridine synthase B [Janthinobacterium sp. Marseille] Length = 546 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 319/509 (62%), Positives = 357/509 (70%), Gaps = 32/509 (6%) Query: 140 APTDSARTKPARRGVRGPRALRNNRAAQR-AAEAGEGEPHHAVAGDEQPLSVDANAPVP- 197 A + A KPA+RG+RGPR LR R R A E + A E P +AP Sbjct: 30 AAQEGAGAKPAKRGLRGPRTLRRARNTPREATEPAVVKVDGAEGAQEMPQGEAGSAPADG 89 Query: 198 VADQAMAESRRDGQGQDRNRQQKGKKPFVKGGKPKA--PQLGLRSH---DAGDDVFSFVT 252 A + + R G+ Q + KG GKP PQ G + H D DDVFSFVT Sbjct: 90 EARRERTNNNRRGERQPGAKGAKGATRPQGRGKPNGAGPQRGGKPHGKADNADDVFSFVT 149 Query: 253 SDAYDKEDGARSGARGTHQLRGKNGRRDLTSEDDAPKLHKVLADSGLGSRRDMEELIVAG 312 SD +D A A G + K RRDLT++DDAPKLHKVLA++GLGSRRDMEELI+AG Sbjct: 150 SDDFDSL-AAEDSAGGKRRHEQKTVRRDLTADDDAPKLHKVLAEAGLGSRRDMEELIIAG 208 Query: 313 RVSVNGEPAHIGQRILPTDQVRINGKLLQRKVSKKPPRVLVYHKPAGEIVSHNDPEGRPS 372 RVSVNGEPAHIGQRILPTDQVRINGKL+QRKVSKKPPRVLVYHKPAGEIVS NDPEGRPS Sbjct: 209 RVSVNGEPAHIGQRILPTDQVRINGKLIQRKVSKKPPRVLVYHKPAGEIVSTNDPEGRPS 268 Query: 373 VFDRLPNMKAAKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELEQ 432 VFDRLP MKAAKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRY I+REYAVRTLGELE+ Sbjct: 269 VFDRLPTMKAAKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYGIDREYAVRTLGELEE 328 Query: 433 GMRQKLLHGVELDDGVAQFSKIADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSRL 492 GMRQKLL GVEL+DG+AQFSKIADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSRL Sbjct: 329 GMRQKLLAGVELEDGLAQFSKIADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSRL 388 Query: 493 IRTRYGVMTLPQGLKRGRWEELEENAVRTLLTVCGLEKPGGAEAPSGKSKGGNSGNRNGN 552 IRTRYG++TLP+ LKRGRWEE+EE+AVR LL + GL+K G P+ K R Sbjct: 389 IRTRYGLLTLPKNLKRGRWEEMEEHAVRDLLALSGLDKNTGEAGPANKG-------RAAG 441 Query: 553 GDNRNGNVNGDSQPRSNANANPMQPRGPRRDQQPSWQGQGQGPRQGQGSRQGQGQGQGQG 612 GD VNG+ PR + QPR P + WQ G G + QG G+ QGQ Sbjct: 442 GD----RVNGNRAPRVDNGLG--QPRSPSQ-----WQNTGTGQGRSQGQNPGKPNRQGQ- 489 Query: 613 GRPQGNKPRQPDPLQTALGFPDAGQRRHN 641 + RQPDPLQT+LGFP GQ R + Sbjct: 490 -----QRSRQPDPLQTSLGFPGMGQPRRS 513 >ref|YP_001100689.1| putative pseudouridine synthase (Uracil hydrolyase) [Herminiimonas arsenicoxydans] emb|CAL62568.1| Pseudouridine synthase [Herminiimonas arsenicoxydans] Length = 538 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 319/511 (62%), Positives = 354/511 (69%), Gaps = 54/511 (10%) Query: 148 KPARRGVRGPRALRNNRAAQRAAEAGEGEPHHAVAGDEQPLSVDANAPVPVADQAMAESR 207 KP +RG+RGPR LR R A R+ A P +EQ V VP A E R Sbjct: 42 KPVKRGLRGPRTLRRARNAPRSGPANHDTP------EEQNAVVVETQAVP----ASGEVR 91 Query: 208 RDGQGQDRNRQQKGKKPFVKGGKP--KAPQLGLRSHDAG---DDVFSFVTSDAYDKEDGA 262 R+ + RQ K P GK P G + H G DDVFSFVTS+A+D Sbjct: 92 RERNPRRDERQPGTKGPQKSSGKSGGAGPNRGSKPHSRGGDADDVFSFVTSEAFDTLSVD 151 Query: 263 RSGARGTHQLRGKNGRRDLTSEDDAPKLHKVLADSGLGSRRDMEELIVAGRVSVNGEPAH 322 A G + K+ RRDLT++DDAPKLHKVLA++GLGSRRDMEELI+AGRVSVNGEPAH Sbjct: 152 DDKAGGKRRPEQKSVRRDLTADDDAPKLHKVLAEAGLGSRRDMEELIIAGRVSVNGEPAH 211 Query: 323 IGQRILPTDQVRINGKLLQRKVSKKPPRVLVYHKPAGEIVSHNDPEGRPSVFDRLPNMKA 382 IGQRILP DQVRINGKL+QRKVS KPPRVLVYHKPAGEIVS NDPEGRPSVF+RLP MKA Sbjct: 212 IGQRILPADQVRINGKLIQRKVSNKPPRVLVYHKPAGEIVSTNDPEGRPSVFERLPTMKA 271 Query: 383 AKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELEQGMRQKLLHGV 442 AKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRY I+REYAVRTLGELE+GMRQKLL GV Sbjct: 272 AKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYGIDREYAVRTLGELEEGMRQKLLAGV 331 Query: 443 ELDDGVAQFSKIADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSRLIRTRYGVMTL 502 EL+DG+AQFSKIADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSRLIRTRYG +TL Sbjct: 332 ELEDGLAQFSKIADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSRLIRTRYGTLTL 391 Query: 503 PQGLKRGRWEELEENAVRTLLTVCGLEKPGGAEAPSGKSKGGNSGNRNGNGDNRNGNVNG 562 P+ LKRGRWEE+EE+AVR LL + GLEK AP G RN D +NGN Sbjct: 392 PKNLKRGRWEEMEEHAVRDLLAMSGLEKKSVDGAPKG---------RNSPADRQNGN--- 439 Query: 563 DSQPRSNANANPMQPRGPRRDQQPSWQGQGQGPRQGQGSRQGQGQGQGQGGRPQGN---- 618 R PR D + G + P Q G+ GQG+ QGQ G+P G Sbjct: 440 ---------------RAPRVD---NGMGLPRSPSQ-WGNLGGQGRPQGQNGKPAGGRQGQ 480 Query: 619 ---KPRQPDPLQTALGFPDAGQ-RRHNRPQR 645 + RQPDPLQT+LGFP GQ RR N P R Sbjct: 481 GQPRSRQPDPLQTSLGFPGMGQPRRSNGPNR 511 >ref|ZP_08276235.1| Ribosomal large subunit pseudouridine synthase B [Oxalobacteraceae bacterium IMCC9480] gb|EGF30293.1| Ribosomal large subunit pseudouridine synthase B [Oxalobacteraceae bacterium IMCC9480] Length = 621 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 330/589 (56%), Positives = 381/589 (64%), Gaps = 66/589 (11%) Query: 81 AADAPAPKKRAPRAKKVVADADTAPAPAPVAESASPAAEAPKVIVTIGEEITAAPVLLDA 140 +A+ P+KR PRAK V A A +A AS AP + ++ + AAP Sbjct: 19 SAEPKVPRKRTPRAKPPVQAVAEASAAPAIATVASGEPAAPSMSLSSTPDAAAAP----- 73 Query: 141 PTDSARTKPARRGVRGPRALRNNRAAQRAAEAGEGEPHHAVAGDEQPLSVDANAPVPVAD 200 RR VRGPR LR R + +AVA D + AP P Sbjct: 74 ----------RRNVRGPRNLRRTR---------DPVERNAVAQDGTAVVAQEGAPDPAQP 114 Query: 201 QAMAESRRDGQGQDRNRQQKGKKPFVKGGKPKAPQL---------GLRSHDAGDDVFSFV 251 + R+ + R R + +P +GG K+ Q R DA D VFSFV Sbjct: 115 AQVRPPRQHAPREARPRSNE-DRPKGQGGAQKSRQKQPAGNAARNAPRGTDA-DSVFSFV 172 Query: 252 TSDAYDKEDGARSGARGTHQLRGKNGRRDLTSEDDAPKLHKVLADSGLGSRRDMEELIVA 311 TS A+D G G K RRDLT++DDAPKLHKVLA++GLGSRRDMEELI++ Sbjct: 173 TSAAFDDSTGDEPG--NGRSPAAKVVRRDLTADDDAPKLHKVLAEAGLGSRRDMEELIIS 230 Query: 312 GRVSVNGEPAHIGQRILPTDQVRINGKLLQRKVSKKPPRVLVYHKPAGEIVSHNDPEGRP 371 GRVSVNGEPAHIGQRIL DQVRINGKL+QR+VSKKPPRVLVYHKPAGEIVSH+DP+GRP Sbjct: 231 GRVSVNGEPAHIGQRILAQDQVRINGKLIQRRVSKKPPRVLVYHKPAGEIVSHDDPDGRP 290 Query: 372 SVFDRLPNMKAAKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELE 431 SVF+RLPNMKA KWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYNI+REYAVRTLGELE Sbjct: 291 SVFERLPNMKAGKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYNIDREYAVRTLGELE 350 Query: 432 QGMRQKLLHGVELDDGVAQFSKIADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSR 491 +GMRQKLL GVELDDGVAQFS++ADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSR Sbjct: 351 EGMRQKLLAGVELDDGVAQFSRVADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSR 410 Query: 492 LIRTRYGVMTLPQGLKRGRWEELEENAVRTLLTVCGLEKPGGAEAPS-GKSKGGNSGNRN 550 LIRTRYG M LP LKRGRWEE++E++VR LL + GLEK G PS G+S +S Sbjct: 411 LIRTRYGAMVLPPNLKRGRWEEMDEHSVRDLLKISGLEKTVGKSEPSRGRSDEHDS---- 466 Query: 551 GNGDNRNGNVNGDSQPRSNANANPMQPRGPRRD--QQPSWQGQGQ-GPRQGQGSRQGQGQ 607 G VNG+ R+ A A P G R + + WQG+G+ GP +G G GQGQ Sbjct: 467 ------EGGVNGNRIERAPATARHGAPNGNRANAPEPGQWQGKGRSGPARGPGGFAGQGQ 520 Query: 608 GQGQGGRPQGN--------------KPRQPDPLQTALGFPDAGQ-RRHN 641 +G G P + RQPDP+QTALGFP GQ RR N Sbjct: 521 PRGPGAYPAQGQGGQGQGRGAPAKARSRQPDPMQTALGFPGMGQPRRSN 569 >ref|YP_004754093.1| ribosomal large subunit pseudouridine synthase B [Collimonas fungivorans Ter331] gb|AEK63270.1| Ribosomal large subunit pseudouridine synthase B [Collimonas fungivorans Ter331] Length = 668 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 338/552 (61%), Positives = 373/552 (67%), Gaps = 46/552 (8%) Query: 1 MKPSSSNDDQQIDLLGAAADNATAVKP-ARKRVKKAAAEDVATEVAPIEKPAKAPAKPRA 59 M P SSND +DL A D A KP ARK A A A PA+ Sbjct: 1 MNPPSSNDAPVVDLT-ATTDPKPAKKPRARKVAADAPIAADAAVPAAAAAEPAKPARAPR 59 Query: 60 KKVAAEAPAETVAPAPVAAEVAADAPAPKKRAPRAK-KVVADADTAPAPAPVAESASPAA 118 KK A A + A A P K APR K +VV + TA E AA Sbjct: 60 KKAVAAAESGAAETAVAAETATPAKP---KAAPRKKVQVVVEPSTA------VEFVVEAA 110 Query: 119 EAPKVIVTIGEEITAAPVLLDAPTDSARTKPARRGVRGPRALRNNR-----AAQRAAEAG 173 A V V +EI+ AP AR +PA+RGVRGPRALR+NR AA + Sbjct: 111 PAVVVPVVANQEISEAP---------ARERPAKRGVRGPRALRSNRAAQRAQESAAAASS 161 Query: 174 EGEPHHAVAGDEQPLSVDANAPVPVADQAMAESR-----------RDGQGQDRNRQQKGK 222 E +A + QP A P D A E R R+G+ R RQ KGK Sbjct: 162 AAEAGNAAVTEGQPSVAQVQA--PAGDPAAGEPRQQRGDRNNGAGRNGERNSRERQPKGK 219 Query: 223 KPFVKGGKP-KAPQLG--LRSHDAGDDVFSFVTSDAYDKEDGARSGARGTHQLRGKNGRR 279 KP + GKP + P+ G R DA D+ FSFVTS+++D A A Q K+ RR Sbjct: 220 KPLAQNGKPGQGPRGGKPSRGGDA-DEAFSFVTSESFDTLVTAEDAAGRQAQ---KSVRR 275 Query: 280 DLTSEDDAPKLHKVLADSGLGSRRDMEELIVAGRVSVNGEPAHIGQRILPTDQVRINGKL 339 DLT+EDDAPKLHKVLAD GLGSRRDMEELI+AGRVSVNGEPAHIGQRILPTDQVRINGKL Sbjct: 276 DLTAEDDAPKLHKVLADVGLGSRRDMEELIIAGRVSVNGEPAHIGQRILPTDQVRINGKL 335 Query: 340 LQRKVSKKPPRVLVYHKPAGEIVSHNDPEGRPSVFDRLPNMKAAKWLAVGRLDFNTEGLL 399 LQRKVSK+PPRVLVYHKPAGEIVSHNDP+GRPSVFDRLPNMKAAKWLAVGRLDFNTEGLL Sbjct: 336 LQRKVSKRPPRVLVYHKPAGEIVSHNDPDGRPSVFDRLPNMKAAKWLAVGRLDFNTEGLL 395 Query: 400 LFTTSGDLANRLMHPRYNIEREYAVRTLGELEQGMRQKLLHGVELDDGVAQFSKIADGGG 459 LFTTSGDLANRLMHPRY I+REYAVRTLGELEQGMRQKLL GVEL+DGVAQF+KIADGGG Sbjct: 396 LFTTSGDLANRLMHPRYGIDREYAVRTLGELEQGMRQKLLAGVELEDGVAQFTKIADGGG 455 Query: 460 EGVNKWYRVTIGEGRNREVRRMFEAIGLTVSRLIRTRYGVMTLPQGLKRGRWEELEENAV 519 EG+NKWYRV IGEGRNREVRRMFEAIGLTVSRLIRTRYG MTLP+GLKRGRWEEL+ENAV Sbjct: 456 EGINKWYRVVIGEGRNREVRRMFEAIGLTVSRLIRTRYGAMTLPRGLKRGRWEELDENAV 515 Query: 520 RTLLTVCGLEKP 531 R +L GL+KP Sbjct: 516 RDMLAAHGLDKP 527