BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0023.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754092.1| hypothetical protein CFU_3445 [Collimonas fu... 258 3e-67 ref|ZP_08276236.1| clustered with transcription termination prot... 255 2e-66 ref|YP_001354187.1| hypothetical protein mma_2497 [Janthinobacte... 255 3e-66 ref|YP_003776992.1| hypothetical protein Hsero_3606 [Herbaspiril... 254 4e-66 sp|A6T0Z0.2|RIMP_JANMA RecName: Full=Ribosome maturation factor ... 254 6e-66 >ref|YP_004754092.1| hypothetical protein CFU_3445 [Collimonas fungivorans Ter331] gb|AEK63269.1| hypothetical protein CFU_3445 [Collimonas fungivorans Ter331] Length = 161 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 127/162 (78%), Positives = 146/162 (90%), Gaps = 1/162 (0%) Query: 40 LQLLDLIETTLSGMGYELVDLEKADRGLVRVFIDFPFADADKGPITVEDCEKVTHQLLHV 99 +QLL+LIETT+ GMGYELV+ EKA RG++RV+IDF +A++G ITVEDCEKVTHQLLHV Sbjct: 1 MQLLELIETTVVGMGYELVEFEKAARGVLRVYIDFTPENAEQGQITVEDCEKVTHQLLHV 60 Query: 100 FTVENVNYERLEVSSPGLDRPLKKLSDYVRFADQEAIVKLRMPMPGAANRKTFQGILRAP 159 TVENV YERLEVSSPGLDRPLKKL+DYVRFA +EAIVKLR+PMPGAA+RK+FQG+L P Sbjct: 61 LTVENVVYERLEVSSPGLDRPLKKLADYVRFAGKEAIVKLRVPMPGAAHRKSFQGVLGEP 120 Query: 160 EGENLKLEFEANDGSAALLDFTLADVDKARLVPKVDFRSRKA 201 +GENLK+EFE DGS ALLDFTLADVDKA LVP+VDFRSRKA Sbjct: 121 DGENLKIEFETKDGS-ALLDFTLADVDKAHLVPQVDFRSRKA 161 >ref|ZP_08276236.1| clustered with transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] gb|EGF30294.1| clustered with transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] Length = 161 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 126/162 (77%), Positives = 142/162 (87%), Gaps = 1/162 (0%) Query: 40 LQLLDLIETTLSGMGYELVDLEKADRGLVRVFIDFPFADADKGPITVEDCEKVTHQLLHV 99 +QLL+LIE T+ GM YELVD E+A RGL+RV+IDFP A++G ITVEDCEKVTHQLLHV Sbjct: 1 MQLLELIEKTVVGMEYELVDFEQAARGLLRVYIDFPPEQAERGMITVEDCEKVTHQLLHV 60 Query: 100 FTVENVNYERLEVSSPGLDRPLKKLSDYVRFADQEAIVKLRMPMPGAANRKTFQGILRAP 159 TVEN YERLEVSSPGLDRPLKKL+DY+RFA EAIVKLRMPMPGAANRK+FQGIL AP Sbjct: 61 LTVENAVYERLEVSSPGLDRPLKKLADYLRFAGMEAIVKLRMPMPGAANRKSFQGILHAP 120 Query: 160 EGENLKLEFEANDGSAALLDFTLADVDKARLVPKVDFRSRKA 201 EG+ +KLEFE +GS A+L+FTLADVDKA LVPKVDFRSRKA Sbjct: 121 EGDQIKLEFEGKEGS-AMLEFTLADVDKAHLVPKVDFRSRKA 161 >ref|YP_001354187.1| hypothetical protein mma_2497 [Janthinobacterium sp. Marseille] gb|ABR90282.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 170 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 130/164 (79%), Positives = 139/164 (84%), Gaps = 1/164 (0%) Query: 38 ISLQLLDLIETTLSGMGYELVDLEKADRGLVRVFIDFPFADADKGPITVEDCEKVTHQLL 97 I LQL LIE T+ GMGYELV+ E+A RGLVRVFIDF DADKG ITVEDCEKVTHQLL Sbjct: 8 ILLQLSALIEKTVVGMGYELVNFEQAARGLVRVFIDFTPEDADKGAITVEDCEKVTHQLL 67 Query: 98 HVFTVENVNYERLEVSSPGLDRPLKKLSDYVRFADQEAIVKLRMPMPGAANRKTFQGILR 157 HV TVEN NYERLEVSSPGLDRPLKKLSDYVRFA EA+VKLRMPMP AANRK+FQGIL+ Sbjct: 68 HVLTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGILQ 127 Query: 158 APEGENLKLEFEANDGSAALLDFTLADVDKARLVPKVDFRSRKA 201 P GE L LEFE NDG A L+FTLADVDKA LVP+V+FRSRKA Sbjct: 128 EPVGETLALEFEGNDGPAK-LEFTLADVDKAHLVPQVNFRSRKA 170 >ref|YP_003776992.1| hypothetical protein Hsero_3606 [Herbaspirillum seropedicae SmR1] gb|ADJ65084.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 254 bits (649), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 126/164 (76%), Positives = 146/164 (89%), Gaps = 2/164 (1%) Query: 40 LQLLDLIETTLSGMGYELVDLEKADRGLVRVFIDFPF-ADADKG-PITVEDCEKVTHQLL 97 +QLL+LIE+TLSG+GYELV+ EKA RGLVRVFIDFPF +A++ ITVEDCEK THQLL Sbjct: 1 MQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 Query: 98 HVFTVENVNYERLEVSSPGLDRPLKKLSDYVRFADQEAIVKLRMPMPGAANRKTFQGILR 157 HVFTVENV YERLEVSSPGLDRPLKK SD+VRF D EA++KLR+P+PG +NRKT++G+LR Sbjct: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 Query: 158 APEGENLKLEFEANDGSAALLDFTLADVDKARLVPKVDFRSRKA 201 PEGE L LEFEANDGSAA+L+FTLADVDKA LVP+VDFRSRK Sbjct: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 >sp|A6T0Z0.2|RIMP_JANMA RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 128/162 (79%), Positives = 138/162 (85%), Gaps = 1/162 (0%) Query: 40 LQLLDLIETTLSGMGYELVDLEKADRGLVRVFIDFPFADADKGPITVEDCEKVTHQLLHV 99 +QL LIE T+ GMGYELV+ E+A RGLVRVFIDF DADKG ITVEDCEKVTHQLLHV Sbjct: 1 MQLSALIEKTVVGMGYELVNFEQAARGLVRVFIDFTPEDADKGAITVEDCEKVTHQLLHV 60 Query: 100 FTVENVNYERLEVSSPGLDRPLKKLSDYVRFADQEAIVKLRMPMPGAANRKTFQGILRAP 159 TVEN NYERLEVSSPGLDRPLKKLSDYVRFA EA+VKLRMPMP AANRK+FQGIL+ P Sbjct: 61 LTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGILQEP 120 Query: 160 EGENLKLEFEANDGSAALLDFTLADVDKARLVPKVDFRSRKA 201 GE L LEFE NDG A L+FTLADVDKA LVP+V+FRSRKA Sbjct: 121 VGETLALEFEGNDGPAK-LEFTLADVDKAHLVPQVNFRSRKA 161