BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0022.p (530 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754091.1| transcription termination protein NusA [Coll... 941 0.0 ref|YP_001354186.1| N utilization substance protein A [Janthinob... 936 0.0 ref|YP_001100686.1| transcription pausing; L factor [Herminiimon... 933 0.0 ref|YP_003776991.1| transcription elongation factor protein [Her... 925 0.0 ref|ZP_08276237.1| Transcription termination protein NusA [Oxalo... 909 0.0 >ref|YP_004754091.1| transcription termination protein NusA [Collimonas fungivorans Ter331] gb|AEK63268.1| Transcription termination protein NusA [Collimonas fungivorans Ter331] Length = 519 Score = 941 bits (2432), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/529 (89%), Positives = 497/529 (93%), Gaps = 10/529 (1%) Query: 1 MSREVLLLVDALAREKNVDKDVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60 MSRE+LLLVDALA EKNVD+DVVFGALEHAL QATKKRYEG+VDIRV+IDRE+GEFESFR Sbjct: 1 MSREILLLVDALAHEKNVDRDVVFGALEHALGQATKKRYEGDVDIRVTIDRETGEFESFR 60 Query: 61 RWHVVPDEAGLQLPDQEVLHFEAKEQIPDIAVDEYIEEPIESVEFGRRFAQDTKQVVLQR 120 RWHVVPDEAGLQLPDQE+L FEAKEQI D+ VD++IEEPIESV+FGRRFAQDTKQVVLQR Sbjct: 61 RWHVVPDEAGLQLPDQEILLFEAKEQIEDVEVDDHIEEPIESVDFGRRFAQDTKQVVLQR 120 Query: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGKIEARLPRDQTIPKENLRIGDR 180 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGKIEARLPRDQTIPKENLRIGDR Sbjct: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGKIEARLPRDQTIPKENLRIGDR 180 Query: 181 VRAYILRIDRNARGPQVILSRNAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 VRA+ILRIDRNARGPQVILSR APEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV Sbjct: 181 VRAFILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 Query: 241 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 FT+DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV Sbjct: 241 FTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 301 DEEKHAMDVVVDEENLAIAXWTSLSTKKTWRRGGQNVRLAAELTGWQINIMTAEESADKS 360 DEEKHAMDVVVDEENLAIA RGGQNVRLAAELTGWQINIMTAEESADKS Sbjct: 301 DEEKHAMDVVVDEENLAIAIG----------RGGQNVRLAAELTGWQINIMTAEESADKS 350 Query: 361 AQETAATRILFMEKLDVDQEVADILVEEGFASLEEIAYVPINEMLEIESFDEETVNELRN 420 A ETAA R LFMEKLDVDQEVADILVEEGFASLEEIAYVPI EMLEI+SFDE+TVNELRN Sbjct: 351 AVETAAIRALFMEKLDVDQEVADILVEEGFASLEEIAYVPITEMLEIDSFDEDTVNELRN 410 Query: 421 RARDALVTEAIASEEGLEGMDEELINFEEMDRVVAGKLGLAGVKNVPAFAALAYDEFGAI 480 RARDALVTEAIASEEGLEGM++ L+NFE MDRV AGKLGLAGVK + AFAALAYDEFGAI Sbjct: 411 RARDALVTEAIASEEGLEGMEDALVNFEGMDRVTAGKLGLAGVKTLAAFAALAYDEFGAI 470 Query: 481 LALSAERARQLIENEFEDVTDDEMKLIDAKYDERAKALQAKAWATVEAK 529 LALSA+RAR LIE EF+DVTDDEMKLIDAKYD+ AKALQAKAW T EAK Sbjct: 471 LALSADRARHLIEQEFKDVTDDEMKLIDAKYDDHAKALQAKAWNTAEAK 519 >ref|YP_001354186.1| N utilization substance protein A [Janthinobacterium sp. Marseille] gb|ABR88645.1| N utilization substance protein A [Janthinobacterium sp. Marseille] Length = 519 Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/529 (89%), Positives = 497/529 (93%), Gaps = 10/529 (1%) Query: 1 MSREVLLLVDALAREKNVDKDVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60 MSRE+LLLVDALAREKNVDKD+VFGALEHALAQATKKRYEG+VDIRVSIDRE+GEFESFR Sbjct: 1 MSREILLLVDALAREKNVDKDIVFGALEHALAQATKKRYEGDVDIRVSIDRETGEFESFR 60 Query: 61 RWHVVPDEAGLQLPDQEVLHFEAKEQIPDIAVDEYIEEPIESVEFGRRFAQDTKQVVLQR 120 RWHVVPDEAGLQLPDQE+LHFEAKEQI DI VD+YIEEPIESV+FGRRFAQDTKQVVLQR Sbjct: 61 RWHVVPDEAGLQLPDQEILHFEAKEQIGDIEVDDYIEEPIESVDFGRRFAQDTKQVVLQR 120 Query: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGKIEARLPRDQTIPKENLRIGDR 180 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESG+IEARLPRDQTIPKENLRIGDR Sbjct: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDR 180 Query: 181 VRAYILRIDRNARGPQVILSRNAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 VRAYILRIDRNARGPQVILSR APEFIMKLFELEVPEIEQG LEIKSAARD GVRAKIAV Sbjct: 181 VRAYILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAV 240 Query: 241 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV Sbjct: 241 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 301 DEEKHAMDVVVDEENLAIAXWTSLSTKKTWRRGGQNVRLAAELTGWQINIMTAEESADKS 360 DEEKHAMDVVVDEENLAIA RGGQNVRLA+ELTGWQINIMTAEESADKS Sbjct: 301 DEEKHAMDVVVDEENLAIAIG----------RGGQNVRLASELTGWQINIMTAEESADKS 350 Query: 361 AQETAATRILFMEKLDVDQEVADILVEEGFASLEEIAYVPINEMLEIESFDEETVNELRN 420 ETAA R LFMEKLDVDQEVADILV+EGFASLEEIAYVPI+EML+IESFDE+TVNELRN Sbjct: 351 QLETAAIRTLFMEKLDVDQEVADILVDEGFASLEEIAYVPISEMLDIESFDEDTVNELRN 410 Query: 421 RARDALVTEAIASEEGLEGMDEELINFEEMDRVVAGKLGLAGVKNVPAFAALAYDEFGAI 480 RARDALVTEAIASEEGLEGM+E L N E MDRV+AGKLGLAG+K + AF+ALAYDEFGAI Sbjct: 411 RARDALVTEAIASEEGLEGMEEALANLEGMDRVMAGKLGLAGIKTLAAFSALAYDEFGAI 470 Query: 481 LALSAERARQLIENEFEDVTDDEMKLIDAKYDERAKALQAKAWATVEAK 529 LAL A+RARQLIE+EF+DVTD+EMKLIDAKYD+ AKALQAK W+ EAK Sbjct: 471 LALPADRARQLIEDEFKDVTDEEMKLIDAKYDDHAKALQAKVWSLAEAK 519 >ref|YP_001100686.1| transcription pausing; L factor [Herminiimonas arsenicoxydans] emb|CAL62565.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [Herminiimonas arsenicoxydans] Length = 519 Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/529 (89%), Positives = 493/529 (93%), Gaps = 10/529 (1%) Query: 1 MSREVLLLVDALAREKNVDKDVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60 MSRE+L LVDALAREKNVD D+VFGALEHALAQATKKRYEG+VDIRVSIDR++GEFESFR Sbjct: 1 MSREILQLVDALAREKNVDPDIVFGALEHALAQATKKRYEGDVDIRVSIDRDTGEFESFR 60 Query: 61 RWHVVPDEAGLQLPDQEVLHFEAKEQIPDIAVDEYIEEPIESVEFGRRFAQDTKQVVLQR 120 RWHVVPD+AGLQLPDQE+LHFEAKEQI DI VD++IEEPIESVEFGRRFAQDTKQVVLQR Sbjct: 61 RWHVVPDDAGLQLPDQEILHFEAKEQIGDIEVDDHIEEPIESVEFGRRFAQDTKQVVLQR 120 Query: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGKIEARLPRDQTIPKENLRIGDR 180 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESG+IEARLPRDQTIPKENLRIGDR Sbjct: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDR 180 Query: 181 VRAYILRIDRNARGPQVILSRNAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 VRAYILRIDRNARGPQVILSR APEFIMKLFELEVPEIEQG LEIKSAARD GVRAKIAV Sbjct: 181 VRAYILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAV 240 Query: 241 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV Sbjct: 241 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 301 DEEKHAMDVVVDEENLAIAXWTSLSTKKTWRRGGQNVRLAAELTGWQINIMTAEESADKS 360 DEEKHAMDVVVDEENLAIA RGGQNVRLA+ELTGWQINIMTAEESADKS Sbjct: 301 DEEKHAMDVVVDEENLAIAIG----------RGGQNVRLASELTGWQINIMTAEESADKS 350 Query: 361 AQETAATRILFMEKLDVDQEVADILVEEGFASLEEIAYVPINEMLEIESFDEETVNELRN 420 ETAATRILFMEKLDVDQEVADILV+EGFASLEEIAYVPI EML+IESFDE+TVNELRN Sbjct: 351 QLETAATRILFMEKLDVDQEVADILVDEGFASLEEIAYVPIGEMLDIESFDEDTVNELRN 410 Query: 421 RARDALVTEAIASEEGLEGMDEELINFEEMDRVVAGKLGLAGVKNVPAFAALAYDEFGAI 480 RARDALVTEAIASEEG+EGMDE L N E MDR+VAGKLGLAGVK + AFA LAYDEFGAI Sbjct: 411 RARDALVTEAIASEEGMEGMDEALANLEGMDRIVAGKLGLAGVKTLDAFAGLAYDEFGAI 470 Query: 481 LALSAERARQLIENEFEDVTDDEMKLIDAKYDERAKALQAKAWATVEAK 529 LAL +RAR LIENEF+DVTD+EMKLIDAKYD+ AKALQAK W+ EAK Sbjct: 471 LALPTDRARHLIENEFKDVTDEEMKLIDAKYDDHAKALQAKVWSLAEAK 519 >ref|YP_003776991.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ65083.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 519 Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/529 (90%), Positives = 499/529 (94%), Gaps = 10/529 (1%) Query: 1 MSREVLLLVDALAREKNVDKDVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60 MSRE+LLLVDALAREKNVDK+VVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR Sbjct: 1 MSREILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60 Query: 61 RWHVVPDEAGLQLPDQEVLHFEAKEQIPDIAVDEYIEEPIESVEFGRRFAQDTKQVVLQR 120 RWHVVPDEAGLQLPDQEVL FEAKEQ PDI VDEYIE+PIESVEFGRRFAQDTKQVVLQR Sbjct: 61 RWHVVPDEAGLQLPDQEVLLFEAKEQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQR 120 Query: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGKIEARLPRDQTIPKENLRIGDR 180 IRDAEREQILADFL RGD+LVTGTIKRMERGDAI+ESGKIEARLPRDQ IPKENLRIGDR Sbjct: 121 IRDAEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDR 180 Query: 181 VRAYILRIDRNARGPQVILSRNAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 VRAYILR+DR+ARGPQVILSR APEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV Sbjct: 181 VRAYILRVDRSARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 Query: 241 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 +T+DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVV Sbjct: 241 YTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVV 300 Query: 301 DEEKHAMDVVVDEENLAIAXWTSLSTKKTWRRGGQNVRLAAELTGWQINIMTAEESADKS 360 DEEKHAMDVVVDEENLAIA RGGQNVRLAAELT WQINIMTAEESADKS Sbjct: 301 DEEKHAMDVVVDEENLAIAIG----------RGGQNVRLAAELTRWQINIMTAEESADKS 350 Query: 361 AQETAATRILFMEKLDVDQEVADILVEEGFASLEEIAYVPINEMLEIESFDEETVNELRN 420 A ETA R LFMEKLDVDQEVADILVEEGF++LEEIAYVPINEMLEIESFDEETVNELRN Sbjct: 351 AAETALIRTLFMEKLDVDQEVADILVEEGFSTLEEIAYVPINEMLEIESFDEETVNELRN 410 Query: 421 RARDALVTEAIASEEGLEGMDEELINFEEMDRVVAGKLGLAGVKNVPAFAALAYDEFGAI 480 RARDALVTEAIASEEGLEGM+EELINFE +DRV+AGKLGLAGVK +PAFA LAYDEFGAI Sbjct: 411 RARDALVTEAIASEEGLEGMEEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAI 470 Query: 481 LALSAERARQLIENEFEDVTDDEMKLIDAKYDERAKALQAKAWATVEAK 529 LAL +ERARQLIEN FEDVTDDEMKLID+KYDERAKALQAKAW+ VE + Sbjct: 471 LALPSERARQLIENAFEDVTDDEMKLIDSKYDERAKALQAKAWSAVEGR 519 >ref|ZP_08276237.1| Transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] gb|EGF30295.1| Transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] Length = 519 Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/529 (86%), Positives = 486/529 (91%), Gaps = 10/529 (1%) Query: 1 MSREVLLLVDALAREKNVDKDVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60 MSREVLLLVDALAREKNVDKD+VFGALEHAL+QATKKRYEG+VDIRV+IDR++G FESFR Sbjct: 1 MSREVLLLVDALAREKNVDKDIVFGALEHALSQATKKRYEGDVDIRVTIDRDTGLFESFR 60 Query: 61 RWHVVPDEAGLQLPDQEVLHFEAKEQIPDIAVDEYIEEPIESVEFGRRFAQDTKQVVLQR 120 RWHVVPDEAGLQLPDQE+LHFEA EQI DI VD++IEEPIESV+FGRRFAQDTKQVVLQR Sbjct: 61 RWHVVPDEAGLQLPDQEILHFEALEQISDIEVDDHIEEPIESVDFGRRFAQDTKQVVLQR 120 Query: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGKIEARLPRDQTIPKENLRIGDR 180 IRDAEREQIL DFLERGDS+VTGTIKRMERGDAIVESGKIEARLPRDQ IPKENLRIGDR Sbjct: 121 IRDAEREQILQDFLERGDSMVTGTIKRMERGDAIVESGKIEARLPRDQMIPKENLRIGDR 180 Query: 181 VRAYILRIDRNARGPQVILSRNAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 VRA+ILR+DRNARGPQVILSR +PEFIMKLFELEVPEIEQG L IKSAARD GVRAKIAV Sbjct: 181 VRAFILRVDRNARGPQVILSRTSPEFIMKLFELEVPEIEQGLLIIKSAARDAGVRAKIAV 240 Query: 241 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV Sbjct: 241 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 301 DEEKHAMDVVVDEENLAIAXWTSLSTKKTWRRGGQNVRLAAELTGWQINIMTAEESADKS 360 DEEKHAMDVVVDEENLAIA RGGQNVRLAAELT WQINIMTAEESA KS Sbjct: 301 DEEKHAMDVVVDEENLAIAIG----------RGGQNVRLAAELTNWQINIMTAEESASKS 350 Query: 361 AQETAATRILFMEKLDVDQEVADILVEEGFASLEEIAYVPINEMLEIESFDEETVNELRN 420 A ETAA R LFM KLDVDQEVADILV+EGFASLEEIAYVPI+EMLEIESFDE+TVNELR Sbjct: 351 ANETAAIRALFMAKLDVDQEVADILVDEGFASLEEIAYVPISEMLEIESFDEDTVNELRT 410 Query: 421 RARDALVTEAIASEEGLEGMDEELINFEEMDRVVAGKLGLAGVKNVPAFAALAYDEFGAI 480 RARDALVTEAIASEEGLEGMD+ L E MDRV AGKLGLAGVK + AF+ LAYDEFGAI Sbjct: 411 RARDALVTEAIASEEGLEGMDDALATMEGMDRVTAGKLGLAGVKTLAAFSGLAYDEFGAI 470 Query: 481 LALSAERARQLIENEFEDVTDDEMKLIDAKYDERAKALQAKAWATVEAK 529 LAL A+RARQLI++EF+DVTD+EMKLIDAKYD+R KALQAKAW EAK Sbjct: 471 LALPADRARQLIDDEFKDVTDEEMKLIDAKYDDRVKALQAKAWNLAEAK 519