BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0018.p (332 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776988.1| tRNA pseudouridine synthase B protein [Herba... 473 e-131 ref|ZP_08273997.1| tRNA pseudouridine 5S synthase [Oxalobacterac... 452 e-125 ref|YP_001354183.1| tRNA pseudouridine synthase B [Janthinobacte... 451 e-125 ref|YP_001100683.1| tRNA pseudouridine 5S synthase [Herminiimona... 451 e-125 ref|YP_004754088.1| tRNA pseudouridine 5S synthase [Collimonas f... 450 e-124 >ref|YP_003776988.1| tRNA pseudouridine synthase B protein [Herbaspirillum seropedicae SmR1] gb|ADJ65080.1| tRNA pseudouridine synthase B protein [Herbaspirillum seropedicae SmR1] Length = 325 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 236/306 (77%), Positives = 262/306 (85%), Gaps = 1/306 (0%) Query: 25 RPPRAPRVPVHGVLLLDKPVGWSSNDALIKAKRLLNALKAGHTGTLDPFATGLLPLCFGE 84 R PR PRVPVHGVLLLDKPVG SSNDALI+AKR+LNA KAGHTGTLDPFATGLLPLCFGE Sbjct: 19 RTPRLPRVPVHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGE 78 Query: 85 ATKFSQDLLEADKTYEAVVHFGIVTSTGDTEGEVLSTKAVDVTPEQIEAVLEKFRGPINQ 144 ATKFSQDLLEADKTYEAVVH G+ T TGDTEG+VLS + V+V+ EQIEA + +FRGPI+Q Sbjct: 79 ATKFSQDLLEADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQ 138 Query: 145 VPPMHSALKRDGKPLYEYARAGITLEREARPVTIHQLELLSYEAPFLRIRVLCSKGTYIR 204 VPPMHSALKRDGKPLYEYARAGITLEREAR VTIH LELL+Y+AP LRIRV CSKGTYIR Sbjct: 139 VPPMHSALKRDGKPLYEYARAGITLEREARNVTIHALELLNYQAPMLRIRVTCSKGTYIR 198 Query: 205 VLGEDIGAALGCGAHLQQLRRTGVGALTLDGSVTLDEFIAL-EDGQRTQALLPVDGLLRT 263 VLGEDIG LGCGAHL LRR GVG LTL+G+VTL+ A E R LLPVDGLLR+ Sbjct: 199 VLGEDIGEVLGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGELEARKALLLPVDGLLRS 258 Query: 264 FPAVMLTDVLTQRFLHGQRLALGKEGIALPAESGRARVYQESSGRLLGTGLMQEFGILAP 323 FPAV L+D L +RFLHGQRL LGKEG+A+P ++GR RVY+ S LLGTGL+QE+ ILAP Sbjct: 259 FPAVQLSDELARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSSDAALLGTGLLQEYAILAP 318 Query: 324 ERLIST 329 ERL+ST Sbjct: 319 ERLVST 324 >ref|ZP_08273997.1| tRNA pseudouridine 5S synthase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32517.1| tRNA pseudouridine 5S synthase [Oxalobacteraceae bacterium IMCC9480] Length = 310 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 225/304 (74%), Positives = 249/304 (81%) Query: 26 PPRAPRVPVHGVLLLDKPVGWSSNDALIKAKRLLNALKAGHTGTLDPFATGLLPLCFGEA 85 PPR R+PVHGVLLLDK G SSND LIKAKRL NA KAGHTGTLDPFATGLLPLCFGEA Sbjct: 5 PPRKKRIPVHGVLLLDKAAGHSSNDVLIKAKRLFNAEKAGHTGTLDPFATGLLPLCFGEA 64 Query: 86 TKFSQDLLEADKTYEAVVHFGIVTSTGDTEGEVLSTKAVDVTPEQIEAVLEKFRGPINQV 145 TKF+QDLLEADKTYE VVH G+ + TGDTEG++L T VDVT QI+AVLEKFRG I+QV Sbjct: 65 TKFAQDLLEADKTYETVVHLGLRSDTGDTEGQILETLPVDVTRAQIDAVLEKFRGAIDQV 124 Query: 146 PPMHSALKRDGKPLYEYARAGITLEREARPVTIHQLELLSYEAPFLRIRVLCSKGTYIRV 205 PPM+SALKRDGKPLYEYARAGITLEREARPV IH LE + YEAPFL +RV CSKGTYIRV Sbjct: 125 PPMYSALKRDGKPLYEYARAGITLEREARPVFIHLLEFVRYEAPFLTLRVSCSKGTYIRV 184 Query: 206 LGEDIGAALGCGAHLQQLRRTGVGALTLDGSVTLDEFIALEDGQRTQALLPVDGLLRTFP 265 LGEDIGAALGCG HL LRRT VG L L +VTL++ A+ + QR L PVD LL +FP Sbjct: 185 LGEDIGAALGCGGHLNALRRTRVGDLVLADAVTLEQIAAVAEDQRGAMLAPVDALLASFP 244 Query: 266 AVMLTDVLTQRFLHGQRLALGKEGIALPAESGRARVYQESSGRLLGTGLMQEFGILAPER 325 + L D L +RFLHGQRL+L KE IALPA GR RV++ES LLGTGLMQEFG+LAPER Sbjct: 245 LLSLNDELARRFLHGQRLSLVKEAIALPATEGRVRVFRESDACLLGTGLMQEFGVLAPER 304 Query: 326 LIST 329 L+ST Sbjct: 305 LVST 308 >ref|YP_001354183.1| tRNA pseudouridine synthase B [Janthinobacterium sp. Marseille] gb|ABR89004.1| tRNA pseudouridine synthase B [Janthinobacterium sp. Marseille] Length = 314 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 224/302 (74%), Positives = 253/302 (83%) Query: 28 RAPRVPVHGVLLLDKPVGWSSNDALIKAKRLLNALKAGHTGTLDPFATGLLPLCFGEATK 87 + RVPVHGVLLLDK VG SSNDALIKAK LL+ALKAGHTGTLDPFATGLLPLCFGEATK Sbjct: 7 KKKRVPVHGVLLLDKQVGVSSNDALIKAKWLLSALKAGHTGTLDPFATGLLPLCFGEATK 66 Query: 88 FSQDLLEADKTYEAVVHFGIVTSTGDTEGEVLSTKAVDVTPEQIEAVLEKFRGPINQVPP 147 F+QDLL+ADKTYE VVH GI T+TGDTEGE +ST AVDVT EQI+ VL +FRG I QVPP Sbjct: 67 FAQDLLDADKTYETVVHLGITTNTGDTEGETISTAAVDVTREQIDTVLGQFRGDILQVPP 126 Query: 148 MHSALKRDGKPLYEYARAGITLEREARPVTIHQLELLSYEAPFLRIRVLCSKGTYIRVLG 207 M+SALKRDGKPLYEYAR GITLEREARPVTIH LE + Y+APFL +RV CSKGTYIRVLG Sbjct: 127 MYSALKRDGKPLYEYAREGITLEREARPVTIHLLEFVDYQAPFLTLRVRCSKGTYIRVLG 186 Query: 208 EDIGAALGCGAHLQQLRRTGVGALTLDGSVTLDEFIALEDGQRTQALLPVDGLLRTFPAV 267 EDIGAALGCGAHL LRR VG L +D ++T+++ A E+G R+ L PVD LL +FPA+ Sbjct: 187 EDIGAALGCGAHLNALRRIQVGDLLIDKAITIEQLAATEEGARSALLAPVDALLTSFPAL 246 Query: 268 MLTDVLTQRFLHGQRLALGKEGIALPAESGRARVYQESSGRLLGTGLMQEFGILAPERLI 327 L++ L +RFLHGQRLALGKE I +P E GR RVY+++ LLGTGLMQEF ILAPERLI Sbjct: 247 YLSEELARRFLHGQRLALGKEDIVVPPEQGRVRVYRDADKVLLGTGLMQEFAILAPERLI 306 Query: 328 ST 329 ST Sbjct: 307 ST 308 >ref|YP_001100683.1| tRNA pseudouridine 5S synthase [Herminiimonas arsenicoxydans] emb|CAL62562.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) [Herminiimonas arsenicoxydans] Length = 314 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 220/309 (71%), Positives = 257/309 (83%) Query: 23 SSRPPRAPRVPVHGVLLLDKPVGWSSNDALIKAKRLLNALKAGHTGTLDPFATGLLPLCF 82 ++ P + RVPVHGVLLLDK G SSNDALIKAK LLNALKAGHTGTLDPFATGLLPLCF Sbjct: 2 TTTPIKKKRVPVHGVLLLDKQAGVSSNDALIKAKWLLNALKAGHTGTLDPFATGLLPLCF 61 Query: 83 GEATKFSQDLLEADKTYEAVVHFGIVTSTGDTEGEVLSTKAVDVTPEQIEAVLEKFRGPI 142 GEATKF+QDLL+ADKTYE VVH G+ T+TGDTEG+V++T AVD++ +QI+AVL +FRG I Sbjct: 62 GEATKFAQDLLDADKTYETVVHLGVTTNTGDTEGDVIATHAVDISRQQIDAVLAQFRGDI 121 Query: 143 NQVPPMHSALKRDGKPLYEYARAGITLEREARPVTIHQLELLSYEAPFLRIRVLCSKGTY 202 QVPPM+SALKRDGKPLYEYARAGITLEREARPVTIH LE + ++APFL +RV CSKGTY Sbjct: 122 EQVPPMYSALKRDGKPLYEYARAGITLEREARPVTIHLLEFVDFQAPFLTLRVRCSKGTY 181 Query: 203 IRVLGEDIGAALGCGAHLQQLRRTGVGALTLDGSVTLDEFIALEDGQRTQALLPVDGLLR 262 IRVLGEDIGAALGCGAHL LRR VG L + ++T++E A + R AL VD LL Sbjct: 182 IRVLGEDIGAALGCGAHLNALRRIQVGDLLIAQAITIEELTAKDADARIAALASVDALLT 241 Query: 263 TFPAVMLTDVLTQRFLHGQRLALGKEGIALPAESGRARVYQESSGRLLGTGLMQEFGILA 322 +FPA+ L++ L +RFLHGQRLALGKE I LP GR R+Y+ES G+LLGTGLMQE+ ILA Sbjct: 242 SFPALRLSEELAKRFLHGQRLALGKENIVLPEGQGRMRIYRESDGQLLGTGLMQEYSILA 301 Query: 323 PERLISTLS 331 PERLIST++ Sbjct: 302 PERLISTVT 310 >ref|YP_004754088.1| tRNA pseudouridine 5S synthase [Collimonas fungivorans Ter331] gb|AEK63265.1| tRNA pseudouridine 5S synthase [Collimonas fungivorans Ter331] Length = 335 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 228/331 (68%), Positives = 267/331 (80%), Gaps = 10/331 (3%) Query: 4 AHRFRKFPDYTIMAQSSPSSSRPPRAPRVPVHGVLLLDKPVGWSSNDALIKAKRLLNALK 63 A RFR ++ P +SRPP+ RVP++GVLLLDKPVG+SSNDALIKAK LLNA K Sbjct: 6 ASRFR-----FLLLHPLPMASRPPKRIRVPLNGVLLLDKPVGFSSNDALIKAKGLLNAQK 60 Query: 64 AGHTGTLDPFATGLLPLCFGEATKFSQDLLEADKTYEAVVHFGIVTSTGDTEGEVLSTKA 123 AGHTGTLDPFATG+LPLCFGEATKF+QDLL+ADKTYE ++H G+ T+TGDTEGEVL K Sbjct: 61 AGHTGTLDPFATGVLPLCFGEATKFAQDLLDADKTYETLIHLGVSTTTGDTEGEVLERKD 120 Query: 124 VDVTPEQIEAVLEKFRGPINQVPPMHSALKRDGKPLYEYARAGITLEREARPVTIHQLEL 183 V V+ QI+AVL +FRGPI QVPPM+SALKRDGKPLYEYARAGITLEREAR V+IH LE Sbjct: 121 VSVSRAQIDAVLAQFRGPIKQVPPMYSALKRDGKPLYEYARAGITLEREARDVSIHTLEF 180 Query: 184 LSYEAPFLRIRVLCSKGTYIRVLGEDIGAALGCGAHLQQLRRTGVGALTLDGSVTLDEFI 243 L+YEAPFLR+RV CSKGTYIRVLGEDIGAALGCGAHLQ+LRR VG LTLDG VTL++ Sbjct: 181 LAYEAPFLRLRVACSKGTYIRVLGEDIGAALGCGAHLQELRRIQVGHLTLDGCVTLEQLD 240 Query: 244 ALEDGQRTQALLPVDGLLRTFPAVMLTDVLTQRFLHGQRLALGKEGIALPAESGRARVYQ 303 A +R+ L PVD LL TFP V+L++ L +RFL GQRL L KEG+ALPA++GR RVY Sbjct: 241 ATGQAERSALLAPVDSLLLTFPEVLLSEPLAKRFLQGQRLTLAKEGVALPADAGRVRVYL 300 Query: 304 E-----SSGRLLGTGLMQEFGILAPERLIST 329 + S +LLGT + E+G+LAPERLI+T Sbjct: 301 QPADAVSVRQLLGTAQLHEYGVLAPERLIAT 331