BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0015.p         (396 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776974.1| hypothetical protein Hsero_3587 [Herbaspiril...   470   e-130
ref|YP_001354180.1| tRNA-dihydrouridine synthase A [Janthinobact...   462   e-128
ref|YP_001100668.1| tRNA-dihydrouridine synthase A [Herminiimona...   451   e-124
ref|YP_004754083.1| tRNA-dihydrouridine synthase A [Collimonas f...   442   e-122
ref|ZP_00946647.1| NIFR3-like protein [Ralstonia solanacearum UW...   437   e-120

>ref|YP_003776974.1| hypothetical protein Hsero_3587 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65066.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 214/241 (88%), Positives = 231/241 (95%)

Query: 1   MDWTDRHCRLFHRQITRHTWLYTEMVTTGALLHGDVPRHLNFNEEEHPVALQLGGSEPDD 60
           MDWTDRHCR+FHRQITRHTWLYTEMVTTGALLHGDVPRHL+F+E+EHPVALQLGGSEP D
Sbjct: 33  MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPAD 92

Query: 61  LAKSARLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPKLVADCVKAMRDAVDIDVTV 120
           LA SA+LG QWGYDEINLNCGCPSERVQKGAFGACLM EP LVADCVKAMRDAV IDVTV
Sbjct: 93  LAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMRDAVSIDVTV 152

Query: 121 KHRIGIDDVESYDFVRDFVGTIAEAGCKTFIVHARNAVLKGLSPKENREIPPLRYEYAYR 180
           KHRIGID+VESYDFVRDFVG IAEAGC+TFIVHARNA+LKGLSPKENREIPPL+Y+YAY+
Sbjct: 153 KHRIGIDEVESYDFVRDFVGQIAEAGCQTFIVHARNAILKGLSPKENREIPPLKYDYAYQ 212

Query: 181 LKKDFPALEILINGGIKTVAEIDLHLQHVDGVMLGREAYHNPFLMAGFDARYYSQLDGGL 240
           LKKDFP+LEILINGGIKT+ EID HL+HVDGVMLGREAYHNP+LMAGFDARYY+ L+GGL
Sbjct: 213 LKKDFPSLEILINGGIKTLPEIDEHLKHVDGVMLGREAYHNPYLMAGFDARYYAALEGGL 272

Query: 241 Q 241
           Q
Sbjct: 273 Q 273


>ref|YP_001354180.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. Marseille]
 gb|ABR89283.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille]
          Length = 344

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 211/233 (90%), Positives = 222/233 (95%)

Query: 1   MDWTDRHCRLFHRQITRHTWLYTEMVTTGALLHGDVPRHLNFNEEEHPVALQLGGSEPDD 60
           MDWTDRHCR+FHRQITRHTWLYTEMVTTGALLHGDVPRHL+FNEEEHPVALQLGGSEP D
Sbjct: 24  MDWTDRHCRMFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFNEEEHPVALQLGGSEPAD 83

Query: 61  LAKSARLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPKLVADCVKAMRDAVDIDVTV 120
           LAKSA+LG QWGYDE+NLNCGCPSERVQKGAFGACLM E  LVADCVKAMRDAV IDVTV
Sbjct: 84  LAKSAKLGEQWGYDEVNLNCGCPSERVQKGAFGACLMNETGLVADCVKAMRDAVSIDVTV 143

Query: 121 KHRIGIDDVESYDFVRDFVGTIAEAGCKTFIVHARNAVLKGLSPKENREIPPLRYEYAYR 180
           KHRIGIDD+ SYDFVRDFVGTIA+AGC TFIVHARNA+LKGLSPKENREIPPLRYE+AY+
Sbjct: 144 KHRIGIDDITSYDFVRDFVGTIADAGCNTFIVHARNAILKGLSPKENREIPPLRYEFAYQ 203

Query: 181 LKKDFPALEILINGGIKTVAEIDLHLQHVDGVMLGREAYHNPFLMAGFDARYY 233
           LKKDFPALEI+INGG KTVAEID HLQHVDGVMLGREAYHNPFLM+ FDARYY
Sbjct: 204 LKKDFPALEIIINGGTKTVAEIDTHLQHVDGVMLGREAYHNPFLMSTFDARYY 256


>ref|YP_001100668.1| tRNA-dihydrouridine synthase A [Herminiimonas arsenicoxydans]
 emb|CAL62547.1| tRNA-dihydrouridine synthase A [Herminiimonas arsenicoxydans]
          Length = 338

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 206/236 (87%), Positives = 219/236 (92%)

Query: 1   MDWTDRHCRLFHRQITRHTWLYTEMVTTGALLHGDVPRHLNFNEEEHPVALQLGGSEPDD 60
           MDWTDRHCR+FHRQITRHTW YTEMVTTGALLHGDV RHL+FN EEHPVALQLGGSEP D
Sbjct: 17  MDWTDRHCRMFHRQITRHTWFYTEMVTTGALLHGDVSRHLDFNHEEHPVALQLGGSEPAD 76

Query: 61  LAKSARLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPKLVADCVKAMRDAVDIDVTV 120
           LAKSA+LG QWGYDEINLNCGCPSERVQKGAFGACLM E  LVADCVKAMRDAV IDVTV
Sbjct: 77  LAKSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMNEAALVADCVKAMRDAVQIDVTV 136

Query: 121 KHRIGIDDVESYDFVRDFVGTIAEAGCKTFIVHARNAVLKGLSPKENREIPPLRYEYAYR 180
           KHRIGIDD+ SYDFVRDFVGT+AEAGC TFIVHARNAVLKGLSPKENREIPPLRYE+AY+
Sbjct: 137 KHRIGIDDIASYDFVRDFVGTVAEAGCNTFIVHARNAVLKGLSPKENREIPPLRYEFAYQ 196

Query: 181 LKKDFPALEILINGGIKTVAEIDLHLQHVDGVMLGREAYHNPFLMAGFDARYYSQL 236
           LK+DFP LEI+INGGIKT+AEID HL HVDGVMLGREAYHNP+LM+ FDARYY  +
Sbjct: 197 LKQDFPQLEIIINGGIKTLAEIDTHLVHVDGVMLGREAYHNPYLMSAFDARYYGDI 252


>ref|YP_004754083.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331]
 gb|AEK63260.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331]
          Length = 338

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 200/239 (83%), Positives = 220/239 (92%)

Query: 1   MDWTDRHCRLFHRQITRHTWLYTEMVTTGALLHGDVPRHLNFNEEEHPVALQLGGSEPDD 60
           MDWTDRHCR+FHRQITRHTWLYTEMVTTGALLHGDVPRHL+F++ EHPVALQLGGSE  D
Sbjct: 19  MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFSDVEHPVALQLGGSESAD 78

Query: 61  LAKSARLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPKLVADCVKAMRDAVDIDVTV 120
           LAKSA+LG++WGYDEINLNCGCPSERVQKGAFGACLMAE +LVADCVKAMRDAV IDVTV
Sbjct: 79  LAKSAKLGQEWGYDEINLNCGCPSERVQKGAFGACLMAEAELVADCVKAMRDAVSIDVTV 138

Query: 121 KHRIGIDDVESYDFVRDFVGTIAEAGCKTFIVHARNAVLKGLSPKENREIPPLRYEYAYR 180
           KHRIGID  ESY+FVRDFVGT+A+AGC+TFIVHARNA+LKGLSPKENREIPPL+YEYAY+
Sbjct: 139 KHRIGIDKTESYEFVRDFVGTVAQAGCQTFIVHARNAILKGLSPKENREIPPLKYEYAYQ 198

Query: 181 LKKDFPALEILINGGIKTVAEIDLHLQHVDGVMLGREAYHNPFLMAGFDARYYSQLDGG 239
           L +DFP LEI+ING IKT  EID HLQ+VDGVMLGREAYHNP+LMA FD+RYY   D  
Sbjct: 199 LARDFPELEIIINGAIKTTEEIDFHLQYVDGVMLGREAYHNPYLMADFDSRYYGAADAA 257


>ref|ZP_00946647.1| NIFR3-like protein [Ralstonia solanacearum UW551]
 gb|EAP70865.1| NIFR3-like protein [Ralstonia solanacearum UW551]
          Length = 344

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 199/233 (85%), Positives = 219/233 (93%)

Query: 1   MDWTDRHCRLFHRQITRHTWLYTEMVTTGALLHGDVPRHLNFNEEEHPVALQLGGSEPDD 60
           MDWTDRHCR FHRQI+RHTWLYTEMVTTGALLHGDVPRHL+F+E EHPVALQLGGSEPDD
Sbjct: 19  MDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPDD 78

Query: 61  LAKSARLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPKLVADCVKAMRDAVDIDVTV 120
           LA+SARLG +WGY EINLNCGCPSERVQ+GAFGACLMAEPKLVADCV+AMRDAV I VTV
Sbjct: 79  LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVRAMRDAVSIPVTV 138

Query: 121 KHRIGIDDVESYDFVRDFVGTIAEAGCKTFIVHARNAVLKGLSPKENREIPPLRYEYAYR 180
           KHRIGID +E+YDFVRDFVGTIAEAGC+TFIVHARNA+LKGLSPKENREIPPLRYE AY+
Sbjct: 139 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQ 198

Query: 181 LKKDFPALEILINGGIKTVAEIDLHLQHVDGVMLGREAYHNPFLMAGFDARYY 233
           LK+DFP LEIL+NGG++T+ +ID HL HVDGVM+GREAYH+P LMA FDARYY
Sbjct: 199 LKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMANFDARYY 251