BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0012.p (155 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001354028.1| N utilization substance protein B [Janthinob... 270 4e-71 ref|YP_001099345.1| transcription termination, L factor (N utili... 267 4e-70 ref|YP_003776971.1| transcription antiterminator (L factor) tran... 265 1e-69 ref|YP_004754080.1| transcription termination protein NusB [Coll... 260 4e-68 ref|ZP_08273569.1| Transcription termination protein NusB [Oxalo... 259 1e-67 >ref|YP_001354028.1| N utilization substance protein B [Janthinobacterium sp. Marseille] gb|ABR88348.1| N utilization substance protein B [Janthinobacterium sp. Marseille] Length = 156 Score = 270 bits (691), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 128/155 (82%), Positives = 138/155 (89%) Query: 1 MTNKIQHANPSKNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFD 60 MT K HANPSKNRTPRHRAREFALQGLYQWLLNNED IE HIR+AHGFDKADAEHFD Sbjct: 1 MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRVIETHIRQAHGFDKADAEHFD 60 Query: 61 VLLYGAIKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVE 120 LLYG +KQ ELR LAPLIDR I+ LSPVEHAALLIGAFELKN++EIPY+VVINEAVE Sbjct: 61 ALLYGTVKQVGELRAGLAPLIDREISALSPVEHAALLIGAFELKNHIEIPYKVVINEAVE 120 Query: 121 LTKSFGGIDGHKYVNGVLDRFAAKAREVEVSAGRR 155 LTKSFGGIDGHKYVNGVLD+FA AREVE++AGR+ Sbjct: 121 LTKSFGGIDGHKYVNGVLDKFAVSAREVEINAGRK 155 >ref|YP_001099345.1| transcription termination, L factor (N utilization substance protein B) [Herminiimonas arsenicoxydans] emb|CAL61218.1| N utilization substance protein B homolog (Protein NusB) [Herminiimonas arsenicoxydans] Length = 156 Score = 267 bits (683), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 128/155 (82%), Positives = 137/155 (88%) Query: 1 MTNKIQHANPSKNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFD 60 MT K HANPSKNRTPRHRAREFALQGLYQWLLNNED IE HIR+AHGFDKADAEHFD Sbjct: 1 MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRTIENHIRQAHGFDKADAEHFD 60 Query: 61 VLLYGAIKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVE 120 LLYG +KQ ELR LAPLIDR I+ LSPVEHAALLIGAFELKN++EIPY+VVINEAVE Sbjct: 61 ALLYGTVKQVGELRAGLAPLIDREISALSPVEHAALLIGAFELKNHIEIPYKVVINEAVE 120 Query: 121 LTKSFGGIDGHKYVNGVLDRFAAKAREVEVSAGRR 155 LTKSFGGIDGHKYVNGVLD+FAA RE E+SAGR+ Sbjct: 121 LTKSFGGIDGHKYVNGVLDKFAAGVREPEISAGRK 155 >ref|YP_003776971.1| transcription antiterminator (L factor) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65063.1| transcription antiterminator (L factor) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 156 Score = 265 bits (678), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 130/156 (83%), Positives = 142/156 (91%), Gaps = 1/156 (0%) Query: 1 MTNKIQHANPSKNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFD 60 M+NK QHAN +KNRTPRHRAREFALQGLYQWLLN+EDAGAIEAHIREAHGFDKADAEHFD Sbjct: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60 Query: 61 VLLYGAIKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVE 120 LL GAI+ A +LR LAPLIDR I ELSPVEHAALLIGA+EL+N++EIPY+VVINEAVE Sbjct: 61 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120 Query: 121 LTKSFGGIDGHKYVNGVLDRFAAKAREVEV-SAGRR 155 LTKSFGGIDGHKYVNGVLDRFAA+ R EV +AGRR Sbjct: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGRR 156 >ref|YP_004754080.1| transcription termination protein NusB [Collimonas fungivorans Ter331] gb|AEK63257.1| Transcription termination protein NusB [Collimonas fungivorans Ter331] Length = 156 Score = 260 bits (665), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 125/155 (80%), Positives = 137/155 (88%) Query: 1 MTNKIQHANPSKNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFD 60 MTNK HANPSK+RTPRHRAREFALQGLYQWLLNNED AI +IR+AHGFDKADAEHF+ Sbjct: 1 MTNKTLHANPSKSRTPRHRAREFALQGLYQWLLNNEDVTAISENIRQAHGFDKADAEHFN 60 Query: 61 VLLYGAIKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVE 120 LLYGAIK A LR L PLIDR I+ELSPVEHAALLIGAFEL+N++EIPYRVVINEAVE Sbjct: 61 SLLYGAIKDAVPLRAGLEPLIDRKISELSPVEHAALLIGAFELQNHVEIPYRVVINEAVE 120 Query: 121 LTKSFGGIDGHKYVNGVLDRFAAKAREVEVSAGRR 155 LTKSFGGIDGHKYVNGVLD+FAAK R E+ AG++ Sbjct: 121 LTKSFGGIDGHKYVNGVLDKFAAKTRATEIGAGKK 155 >ref|ZP_08273569.1| Transcription termination protein NusB [Oxalobacteraceae bacterium IMCC9480] gb|EGF32966.1| Transcription termination protein NusB [Oxalobacteraceae bacterium IMCC9480] Length = 157 Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 119/149 (79%), Positives = 137/149 (91%) Query: 7 HANPSKNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFDVLLYGA 66 HANP+K+RTPRHR+REFALQGLYQWLLNNEDAG IEAH+REAHGFDKADA HFD LLYG Sbjct: 8 HANPNKSRTPRHRSREFALQGLYQWLLNNEDAGVIEAHLREAHGFDKADAVHFDALLYGT 67 Query: 67 IKQAPELRTDLAPLIDRSITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVELTKSFG 126 IKQA LRTDL PLIDR +++LSP+EHA LLIGA+ELKN++EIPY+V+INE+VEL KSFG Sbjct: 68 IKQADALRTDLLPLIDRPLSQLSPIEHAILLIGAYELKNHIEIPYKVIINESVELAKSFG 127 Query: 127 GIDGHKYVNGVLDRFAAKAREVEVSAGRR 155 GIDGHKYVNGVLD+FAAK REVE++A R+ Sbjct: 128 GIDGHKYVNGVLDKFAAKTREVEIAASRQ 156