BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0008.p         (198 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_995152.1| two component heavy metal response transcriptio...   194   8e-48
ref|YP_003775891.1| two component heavy metal response transcrip...   188   3e-46
ref|YP_004751899.1| DNA-binding heavy metal response regulator [...   182   3e-44
gb|EGP44710.1| two component heavy metal response transcriptiona...   175   3e-42
ref|YP_004156915.1| winged helix family two component heavy meta...   174   6e-42

>ref|YP_995152.1| two component heavy metal response transcriptional regulator
           [Verminephrobacter eiseniae EF01-2]
 gb|ABM56134.1| two component heavy metal response transcriptional regulator,
           winged helix family [Verminephrobacter eiseniae EF01-2]
          Length = 231

 Score =  194 bits (492), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 100/117 (85%), Positives = 102/117 (87%), Gaps = 11/117 (9%)

Query: 82  LRIGDLQIDLLSRKAYRSNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDMNFDSN 141
           LRIGDLQIDLLSRKA R+NTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDMNFDSN
Sbjct: 126 LRIGDLQIDLLSRKALRNNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDMNFDSN 185

Query: 142 TNVVEVAIKRLRAKIDAPFDQKLLHTIRGMGYVLEPRASEAPAPEHDEYDEHDGEHG 198
           TNVVEVAIKRLRAKIDAPF QKLLHTIRGMGYVLEPRA+            HDGE G
Sbjct: 186 TNVVEVAIKRLRAKIDAPFSQKLLHTIRGMGYVLEPRAT-----------AHDGEGG 231


>ref|YP_003775891.1| two component heavy metal response transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ63983.1| two component heavy metal response transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/99 (91%), Positives = 96/99 (96%)

Query: 82  LRIGDLQIDLLSRKAYRSNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDMNFDSN 141
           LRIGDLQIDLLSRKA+R   RIDLTAKEFALLA+MARRQGEILSKTAIAELVWDMNFDSN
Sbjct: 126 LRIGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDMNFDSN 185

Query: 142 TNVVEVAIKRLRAKIDAPFDQKLLHTIRGMGYVLEPRAS 180
           TNVVEVAIKRLRAKIDAPF+QKLLHT+RGMGYVLEPRA+
Sbjct: 186 TNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRAT 224


>ref|YP_004751899.1| DNA-binding heavy metal response regulator [Collimonas fungivorans
           Ter331]
 gb|AEK61076.1| DNA-binding heavy metal response regulator [Collimonas fungivorans
           Ter331]
          Length = 229

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/100 (87%), Positives = 94/100 (94%)

Query: 82  LRIGDLQIDLLSRKAYRSNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDMNFDSN 141
           LRI DLQIDL+SRKAYR+N RIDLTAKEF+LLA++ARRQGEILSKTAIAELVWDMNFDSN
Sbjct: 126 LRIADLQIDLISRKAYRANVRIDLTAKEFSLLAVLARRQGEILSKTAIAELVWDMNFDSN 185

Query: 142 TNVVEVAIKRLRAKIDAPFDQKLLHTIRGMGYVLEPRASE 181
           TNVVEVAIKRLRAKID PF  KLLHTIRGMGYVLEPR+ +
Sbjct: 186 TNVVEVAIKRLRAKIDTPFSPKLLHTIRGMGYVLEPRSPQ 225


>gb|EGP44710.1| two component heavy metal response transcriptional regulator winged
           helix family protein [Achromobacter xylosoxidans AXX-A]
          Length = 228

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/103 (84%), Positives = 95/103 (92%), Gaps = 1/103 (0%)

Query: 82  LRIGDLQIDLLSRKAYRSNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDMNFDSN 141
           LRIGDLQIDL+SRKA+R+  R+DLTAKEFALLA++ARRQGEILSKTAIAELVWDMNFDSN
Sbjct: 126 LRIGDLQIDLISRKAWRAGARLDLTAKEFALLAVLARRQGEILSKTAIAELVWDMNFDSN 185

Query: 142 TNVVEVAIKRLRAKIDAPFDQKLLHTIRGMGYVLEPRASEAPA 184
            NVVEVAIKRLR K+DAPFD+KLLHTIRGMGYVLE R  E PA
Sbjct: 186 VNVVEVAIKRLRGKVDAPFDRKLLHTIRGMGYVLELRDDE-PA 227


>ref|YP_004156915.1| winged helix family two component heavy metal response
           transcriptional regulator [Variovorax paradoxus EPS]
 gb|ADU38804.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus EPS]
          Length = 235

 Score =  174 bits (442), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/103 (83%), Positives = 94/103 (91%)

Query: 82  LRIGDLQIDLLSRKAYRSNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDMNFDSN 141
           LRI +LQIDLL+RKA+R  TRIDLTAKEFALLA++ARRQGEILSKTAIAELVWDMNFDSN
Sbjct: 126 LRIANLQIDLLARKAFRGATRIDLTAKEFALLAVLARRQGEILSKTAIAELVWDMNFDSN 185

Query: 142 TNVVEVAIKRLRAKIDAPFDQKLLHTIRGMGYVLEPRASEAPA 184
           TNVVEVAIKRLR KIDAPF  KLLHTIRGMGYV+E R +E+ A
Sbjct: 186 TNVVEVAIKRLRDKIDAPFSPKLLHTIRGMGYVMELRDTESEA 228